RNA–Protein interactions for RNA: ENST00000567160.1

CLN3-226, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 616 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-226ENST00000567160 ANKRD11Q6UB99 2663 aaPredicted RBP12.52□□□□□ -0.41
CLN3-226ENST00000567160 C2CD2LO14523 706 aa12.51□□□□□ -0.41
CLN3-226ENST00000567160 LILRB3O75022 631 aa12.51□□□□□ -0.41
CLN3-226ENST00000567160 UBA7P41226 1012 aa12.51□□□□□ -0.41
CLN3-226ENST00000567160 RAB27AP51159 221 aa12.51□□□□□ -0.41
CLN3-226ENST00000567160 GPC3P51654 580 aa12.51□□□□□ -0.41
CLN3-226ENST00000567160 GPC5P78333 572 aa12.51□□□□□ -0.41
CLN3-226ENST00000567160 CTTNQ14247 550 aaKnown RBP12.51□□□□□ -0.41
CLN3-226ENST00000567160 PPP2R5DQ14738 602 aa12.51□□□□□ -0.41
CLN3-226ENST00000567160 UGCGQ16739 394 aa12.51□□□□□ -0.41
CLN3-226ENST00000567160 RESP18Q5W5W9 173 aa12.51□□□□□ -0.41
CLN3-226ENST00000567160 HAUS3Q68CZ6 603 aa12.51□□□□□ -0.41
CLN3-226ENST00000567160 ADALQ6DHV7 355 aa12.51□□□□□ -0.41
CLN3-226ENST00000567160 TWF2Q6IBS0 349 aaKnown RBP12.51□□□□□ -0.41
CLN3-226ENST00000567160 MTSS1LQ765P7 747 aa12.51□□□□□ -0.41
CLN3-226ENST00000567160 FSIP1Q8NA03 581 aa12.51□□□□□ -0.41
CLN3-226ENST00000567160 ZNF579Q8NAF0 562 aaKnown RBP12.51□□□□□ -0.41
CLN3-226ENST00000567160 RDM1Q8NG50 284 aa12.51□□□□□ -0.41
CLN3-226ENST00000567160 NLRP7Q8WX94 980 aa12.51□□□□□ -0.41
CLN3-226ENST00000567160 FAM167AQ96KS9 214 aa12.51□□□□□ -0.41
CLN3-226ENST00000567160 AK8Q96MA6 479 aa12.51□□□□□ -0.41
CLN3-226ENST00000567160 FAM193BQ96PV7 902 aaPredicted RBP12.51□□□□□ -0.41
CLN3-226ENST00000567160 RPS6KC1Q96S38 1066 aa12.51□□□□□ -0.41
CLN3-226ENST00000567160 NELL2Q99435 816 aa12.51□□□□□ -0.41
CLN3-226ENST00000567160 MMTAG2Q9BU76 263 aaKnown RBP12.51□□□□□ -0.41
CLN3-226ENST00000567160 PLEKHA4Q9H4M7 779 aa12.51□□□□□ -0.41
CLN3-226ENST00000567160 ZDHHC7Q9NXF8 308 aa12.51□□□□□ -0.41
CLN3-226ENST00000567160 GABBR1Q9UBS5 961 aa12.51□□□□□ -0.41
CLN3-226ENST00000567160 DNAJB4Q9UDY4 337 aa12.51□□□□□ -0.41
CLN3-226ENST00000567160 DYNC1LI1Q9Y6G9 523 aaKnown RBP12.51□□□□□ -0.41
CLN3-226ENST00000567160 A0A1B0GVL5 298 aa12.5□□□□□ -0.41
CLN3-226ENST00000567160 MED24O75448 989 aa12.5□□□□□ -0.41
CLN3-226ENST00000567160 RFPL2O75678 378 aa12.5□□□□□ -0.41
CLN3-226ENST00000567160 PAPLNO95428 1278 aa12.5□□□□□ -0.41
CLN3-226ENST00000567160 C1RP00736 705 aa12.5□□□□□ -0.41
CLN3-226ENST00000567160 SOD2P04179 222 aa12.5□□□□□ -0.41
CLN3-226ENST00000567160 ALDH2P05091 517 aa12.5□□□□□ -0.41
CLN3-226ENST00000567160 RETP07949 1114 aa12.5□□□□□ -0.41
CLN3-226ENST00000567160 ATP4AP20648 1035 aa12.5□□□□□ -0.41
CLN3-226ENST00000567160 SFPQP23246 707 aaKnown RBP eCLIP12.5□□□□□ -0.41
CLN3-226ENST00000567160 MCM4P33991 863 aa12.5□□□□□ -0.41
CLN3-226ENST00000567160 TXLNAP40222 546 aa12.5□□□□□ -0.41
CLN3-226ENST00000567160 RPS9P46781 194 aaKnown RBP12.5□□□□□ -0.41
CLN3-226ENST00000567160 SHC2P98077 582 aa12.5□□□□□ -0.41
CLN3-226ENST00000567160 CDC42EP1Q00587 391 aa12.5□□□□□ -0.41
CLN3-226ENST00000567160 SLC44A4Q53GD3 710 aa12.5□□□□□ -0.41
CLN3-226ENST00000567160 TRMT1LQ7Z2T5 733 aaKnown RBP12.5□□□□□ -0.41
CLN3-226ENST00000567160 TPH2Q8IWU9 490 aa12.5□□□□□ -0.41
CLN3-226ENST00000567160 CELF5Q8N6W0 485 aaKnown RBP12.5□□□□□ -0.41
CLN3-226ENST00000567160 PDILTQ8N807 584 aa12.5□□□□□ -0.41
CLN3-226ENST00000567160 PGBD4Q96DM1 585 aa12.5□□□□□ -0.41
CLN3-226ENST00000567160 CALML4Q96GE6 196 aa12.5□□□□□ -0.41
CLN3-226ENST00000567160 CDK5RAP3Q96JB5 506 aa12.5□□□□□ -0.41
CLN3-226ENST00000567160 LXNQ9BS40 222 aa12.5□□□□□ -0.41
CLN3-226ENST00000567160 TMEM175Q9BSA9 504 aa12.5□□□□□ -0.41
CLN3-226ENST00000567160 PANK2Q9BZ23 570 aa12.5□□□□□ -0.41
CLN3-226ENST00000567160 GCOM2Q9BZD3 368 aaPredicted RBP12.5□□□□□ -0.41
CLN3-226ENST00000567160 GOLPH3LQ9H4A5 285 aa12.5□□□□□ -0.41
CLN3-226ENST00000567160 LTB4R2Q9NPC1 389 aa12.5□□□□□ -0.41
CLN3-226ENST00000567160 PRMT8Q9NR22 394 aaPredicted RBP12.5□□□□□ -0.41
CLN3-226ENST00000567160 FAM13BQ9NYF5 915 aa12.5□□□□□ -0.41
CLN3-226ENST00000567160 FAN1Q9Y2M0 1017 aa12.5□□□□□ -0.41
CLN3-226ENST00000567160 MRPS17Q9Y2R5 130 aaKnown RBP12.5□□□□□ -0.41
CLN3-226ENST00000567160 MAFBQ9Y5Q3 323 aaPredicted RBP12.5□□□□□ -0.41
CLN3-226ENST00000567160 A0A087WWV3 80 aa12.49□□□□□ -0.41
CLN3-226ENST00000567160 A0A1W2PQ27 194 aa12.49□□□□□ -0.41
CLN3-226ENST00000567160 A0A1W2PQ64 194 aa12.49□□□□□ -0.41
CLN3-226ENST00000567160 A0A1W2PQD8 194 aa12.49□□□□□ -0.41
CLN3-226ENST00000567160 TEX28O15482 410 aa12.49□□□□□ -0.41
CLN3-226ENST00000567160 OFD1O75665 1012 aa12.49□□□□□ -0.41
CLN3-226ENST00000567160 SLITRK3O94933 977 aa12.49□□□□□ -0.41
CLN3-226ENST00000567160 P4HBP07237 508 aaKnown RBP12.49□□□□□ -0.41
CLN3-226ENST00000567160 SPATA31C1P0DKV0 1188 aa12.49□□□□□ -0.41
CLN3-226ENST00000567160 PFKFB1P16118 471 aa12.49□□□□□ -0.41
CLN3-226ENST00000567160 FGFR4P22455 802 aa12.49□□□□□ -0.41
CLN3-226ENST00000567160 FSHRP23945 695 aa12.49□□□□□ -0.41
CLN3-226ENST00000567160 CMA1P23946 247 aa12.49□□□□□ -0.41
CLN3-226ENST00000567160 RPA1P27694 616 aa12.49□□□□□ -0.41
CLN3-226ENST00000567160 QARSP47897 775 aaKnown RBP12.49□□□□□ -0.41
CLN3-226ENST00000567160 KARSQ15046 597 aaKnown RBP12.49□□□□□ -0.41
CLN3-226ENST00000567160 ECM1Q16610 540 aa12.49□□□□□ -0.41
CLN3-226ENST00000567160 IL31Q6EBC2 164 aa12.49□□□□□ -0.41
CLN3-226ENST00000567160 CATSPER3Q86XQ3 398 aa12.49□□□□□ -0.41
CLN3-226ENST00000567160 LRRC71Q8N4P6 559 aa12.49□□□□□ -0.41
CLN3-226ENST00000567160 LINC01465Q8N7H1 131 aa12.49□□□□□ -0.41
CLN3-226ENST00000567160 LPPQ93052 612 aa12.49□□□□□ -0.41
CLN3-226ENST00000567160 CLDN23Q96B33 292 aa12.49□□□□□ -0.41
CLN3-226ENST00000567160 ZNF707Q96C28 371 aaPredicted RBP12.49□□□□□ -0.41
CLN3-226ENST00000567160 PNMA5Q96PV4 448 aa12.49□□□□□ -0.41
CLN3-226ENST00000567160 HSD17B14Q9BPX1 270 aa12.49□□□□□ -0.41
CLN3-226ENST00000567160 POLR3CQ9BUI4 534 aaPredicted RBP12.49□□□□□ -0.41
CLN3-226ENST00000567160 HERC2P3Q9BVR0 1158 aa12.49□□□□□ -0.41
CLN3-226ENST00000567160 PRKD2Q9BZL6 878 aa12.49□□□□□ -0.41
CLN3-226ENST00000567160 CCSER1Q9C0I3 900 aa12.49□□□□□ -0.41
CLN3-226ENST00000567160 NT5C3AQ9H0P0 336 aa12.49□□□□□ -0.41
CLN3-226ENST00000567160 TUFT1Q9NNX1 390 aa12.49□□□□□ -0.41
CLN3-226ENST00000567160 LMBRD1Q9NUN5 540 aa12.49□□□□□ -0.41
CLN3-226ENST00000567160 KANSL3Q9P2N6 904 aa12.49□□□□□ -0.41
CLN3-226ENST00000567160 KIAA1024Q9UPX6 916 aa12.49□□□□□ -0.41
CLN3-226ENST00000567160 MTF2Q9Y483 593 aaPredicted RBP12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms