RNA–Protein interactions for RNA: ENST00000566779.1

GTF3C1-206, Transcript of general transcription factor IIIC subunit 1, humanhuman

TSL 3

Gene GTF3C1, Length 645 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3C1-206ENST00000566779 NT5C3AQ9H0P0 336 aa11.12□□□□□ -0.63
GTF3C1-206ENST00000566779 FZD8Q9H461 694 aa11.12□□□□□ -0.63
GTF3C1-206ENST00000566779 MRPL17Q9NRX2 175 aaKnown RBP11.12□□□□□ -0.63
GTF3C1-206ENST00000566779 MARCH5Q9NX47 278 aa11.12□□□□□ -0.63
GTF3C1-206ENST00000566779 PRKAG3Q9UGI9 489 aa11.12□□□□□ -0.63
GTF3C1-206ENST00000566779 MUTYHQ9UIF7 546 aa11.12□□□□□ -0.63
GTF3C1-206ENST00000566779 DOCK6Q96HP0 2047 aa11.11□□□□□ -0.63
GTF3C1-206ENST00000566779 CARNS1A5YM72 827 aa11.11□□□□□ -0.63
GTF3C1-206ENST00000566779 PLCG1P19174 1290 aa11.11□□□□□ -0.63
GTF3C1-206ENST00000566779 SYT1P21579 422 aa11.11□□□□□ -0.63
GTF3C1-206ENST00000566779 STRN3Q13033 797 aa11.11□□□□□ -0.63
GTF3C1-206ENST00000566779 CUL4AQ13619 759 aa11.11□□□□□ -0.63
GTF3C1-206ENST00000566779 CBX2Q14781 532 aaPredicted RBP11.11□□□□□ -0.63
GTF3C1-206ENST00000566779 FAM187BQ17R55 369 aa11.11□□□□□ -0.63
GTF3C1-206ENST00000566779 DCAF4L1Q3SXM0 396 aa11.11□□□□□ -0.63
GTF3C1-206ENST00000566779 TMEM31Q5JXX7 168 aa11.11□□□□□ -0.63
GTF3C1-206ENST00000566779 SPECC1Q5M775 1068 aa11.11□□□□□ -0.63
GTF3C1-206ENST00000566779 NT5DC1Q5TFE4 455 aa11.11□□□□□ -0.63
GTF3C1-206ENST00000566779 ARL6IP4Q66PJ3 421 aaKnown RBP11.11□□□□□ -0.63
GTF3C1-206ENST00000566779 CES5AQ6NT32 575 aa11.11□□□□□ -0.63
GTF3C1-206ENST00000566779 SYCE2Q6PIF2 218 aa11.11□□□□□ -0.63
GTF3C1-206ENST00000566779 CEP57Q86XR8 500 aa11.11□□□□□ -0.63
GTF3C1-206ENST00000566779 HSCBQ8IWL3 235 aa11.11□□□□□ -0.63
GTF3C1-206ENST00000566779 CEP120Q8N960 986 aa11.11□□□□□ -0.63
GTF3C1-206ENST00000566779 HERC2P3Q9BVR0 1158 aa11.11□□□□□ -0.63
GTF3C1-206ENST00000566779 TARS2Q9BW92 718 aaKnown RBP11.11□□□□□ -0.63
GTF3C1-206ENST00000566779 COLEC11Q9BWP8 271 aa11.11□□□□□ -0.63
GTF3C1-206ENST00000566779 MRPL4Q9BYD3 311 aaKnown RBP11.11□□□□□ -0.63
GTF3C1-206ENST00000566779 CXCL16Q9H2A7 254 aa11.11□□□□□ -0.63
GTF3C1-206ENST00000566779 CLIC4Q9Y696 253 aa11.11□□□□□ -0.63
GTF3C1-206ENST00000566779 SPTBN5Q9NRC6 3674 aaKnown RBP11.1□□□□□ -0.63
GTF3C1-206ENST00000566779 K7ENM7 598 aa11.1□□□□□ -0.63
GTF3C1-206ENST00000566779 DCXO43602 365 aa11.1□□□□□ -0.63
GTF3C1-206ENST00000566779 TBCAO75347 108 aaKnown RBP11.1□□□□□ -0.63
GTF3C1-206ENST00000566779 TADA2AO75478 443 aa11.1□□□□□ -0.63
GTF3C1-206ENST00000566779 FAM13AO94988 1023 aa11.1□□□□□ -0.63
GTF3C1-206ENST00000566779 BMP15O95972 392 aa11.1□□□□□ -0.63
GTF3C1-206ENST00000566779 SOD2P04179 222 aa11.1□□□□□ -0.63
GTF3C1-206ENST00000566779 SPATA31D3P0C874 917 aa11.1□□□□□ -0.63
GTF3C1-206ENST00000566779 RPL17P18621 184 aaKnown RBP11.1□□□□□ -0.63
GTF3C1-206ENST00000566779 YARSP54577 528 aaKnown RBP11.1□□□□□ -0.63
GTF3C1-206ENST00000566779 DSC1Q08554 894 aa11.1□□□□□ -0.63
GTF3C1-206ENST00000566779 RESTQ13127 1097 aa11.1□□□□□ -0.63
GTF3C1-206ENST00000566779 MAPK7Q13164 816 aa11.1□□□□□ -0.63
GTF3C1-206ENST00000566779 TUSC3Q13454 348 aa11.1□□□□□ -0.63
GTF3C1-206ENST00000566779 HSP90AA2PQ14568 343 aaPredicted RBP11.1□□□□□ -0.63
GTF3C1-206ENST00000566779 FOXD4L6Q3SYB3 417 aaPredicted RBP11.1□□□□□ -0.63
GTF3C1-206ENST00000566779 TMEM119Q4V9L6 283 aa11.1□□□□□ -0.63
GTF3C1-206ENST00000566779 FUT10Q6P4F1 479 aa11.1□□□□□ -0.63
GTF3C1-206ENST00000566779 TMC5Q6UXY8 1006 aa11.1□□□□□ -0.63
GTF3C1-206ENST00000566779 FOXD4L3Q6VB84 417 aaPredicted RBP11.1□□□□□ -0.63
GTF3C1-206ENST00000566779 SPATA31D4Q6ZUB0 917 aa11.1□□□□□ -0.63
GTF3C1-206ENST00000566779 C1orf186Q6ZWK4 172 aa11.1□□□□□ -0.63
GTF3C1-206ENST00000566779 TAS1R1Q7RTX1 841 aa11.1□□□□□ -0.63
GTF3C1-206ENST00000566779 RNF135Q8IUD6 432 aa11.1□□□□□ -0.63
GTF3C1-206ENST00000566779 DAW1Q8N136 415 aa11.1□□□□□ -0.63
GTF3C1-206ENST00000566779 RIN2Q8WYP3 895 aaPredicted RBP11.1□□□□□ -0.63
GTF3C1-206ENST00000566779 PAAF1Q9BRP4 392 aa11.1□□□□□ -0.63
GTF3C1-206ENST00000566779 CCDC94Q9BW85 323 aaPredicted RBP11.1□□□□□ -0.63
GTF3C1-206ENST00000566779 CDT1Q9H211 546 aa11.1□□□□□ -0.63
GTF3C1-206ENST00000566779 ADAM28Q9UKQ2 775 aa11.1□□□□□ -0.63
GTF3C1-206ENST00000566779 XIRP2A4UGR9 3374 aa11.1□□□□□ -0.63
GTF3C1-206ENST00000566779 RCCD1A6NED2 376 aa11.09□□□□□ -0.63
GTF3C1-206ENST00000566779 PTGESO14684 152 aa11.09□□□□□ -0.63
GTF3C1-206ENST00000566779 KIF4AO95239 1232 aa11.09□□□□□ -0.63
GTF3C1-206ENST00000566779 THP07101 528 aa11.09□□□□□ -0.63
GTF3C1-206ENST00000566779 ADH1AP07327 375 aa11.09□□□□□ -0.63
GTF3C1-206ENST00000566779 CNPP09543 421 aaKnown RBP11.09□□□□□ -0.63
GTF3C1-206ENST00000566779 ALADP13716 330 aa11.09□□□□□ -0.63
GTF3C1-206ENST00000566779 SMTNP53814 917 aa11.09□□□□□ -0.63
GTF3C1-206ENST00000566779 GIT2Q14161 759 aa11.09□□□□□ -0.63
GTF3C1-206ENST00000566779 SEZ6Q53EL9 994 aa11.09□□□□□ -0.63
GTF3C1-206ENST00000566779 PRSS55Q6UWB4 352 aaPredicted RBP11.09□□□□□ -0.63
GTF3C1-206ENST00000566779 PALB2Q86YC2 1186 aa11.09□□□□□ -0.63
GTF3C1-206ENST00000566779 MYCT1Q8N699 235 aa11.09□□□□□ -0.63
GTF3C1-206ENST00000566779 GSTCDQ8NEC7 633 aa11.09□□□□□ -0.63
GTF3C1-206ENST00000566779 FEZF2Q8TBJ5 459 aa11.09□□□□□ -0.63
GTF3C1-206ENST00000566779 FBXL18Q96ME1 805 aa11.09□□□□□ -0.63
GTF3C1-206ENST00000566779 KLHL5Q96PQ7 755 aa11.09□□□□□ -0.63
GTF3C1-206ENST00000566779 REEP2Q9BRK0 252 aa11.09□□□□□ -0.63
GTF3C1-206ENST00000566779 PHF7Q9BWX1 381 aaPredicted RBP11.09□□□□□ -0.63
GTF3C1-206ENST00000566779 GOLGA2P5Q9HBQ8 144 aa11.09□□□□□ -0.63
GTF3C1-206ENST00000566779 SCUBE2Q9NQ36 999 aa11.09□□□□□ -0.63
GTF3C1-206ENST00000566779 MAN1C1Q9NR34 630 aa11.09□□□□□ -0.63
GTF3C1-206ENST00000566779 DZANK1Q9NVP4 752 aa11.09□□□□□ -0.63
GTF3C1-206ENST00000566779 SF3B1O75533 1304 aaKnown RBP eCLIP11.09□□□□□ -0.635e-6■■■■■ 86.9
GTF3C1-206ENST00000566779 C5orf42Q9H799 3197 aa11.08□□□□□ -0.64
GTF3C1-206ENST00000566779 PPP1R3GB7ZBB8 358 aa11.08□□□□□ -0.64
GTF3C1-206ENST00000566779 INPPL1O15357 1258 aa11.08□□□□□ -0.64
GTF3C1-206ENST00000566779 TEX28O15482 410 aa11.08□□□□□ -0.64
GTF3C1-206ENST00000566779 STX6O43752 255 aa11.08□□□□□ -0.64
GTF3C1-206ENST00000566779 GLUD1P00367 558 aa11.08□□□□□ -0.64
GTF3C1-206ENST00000566779 PLS3P13797 630 aa11.08□□□□□ -0.64
GTF3C1-206ENST00000566779 HOXB8P17481 243 aaPredicted RBP11.08□□□□□ -0.64
GTF3C1-206ENST00000566779 GUCY2CP25092 1073 aa11.08□□□□□ -0.64
GTF3C1-206ENST00000566779 LONP1P36776 959 aaKnown RBP11.08□□□□□ -0.64
GTF3C1-206ENST00000566779 TXLNAP40222 546 aa11.08□□□□□ -0.64
GTF3C1-206ENST00000566779 SLC12A3P55017 1021 aa11.08□□□□□ -0.64
GTF3C1-206ENST00000566779 NOLC1Q14978 699 aaKnown RBP eCLIP11.08□□□□□ -0.64
GTF3C1-206ENST00000566779 STK38Q15208 465 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms