RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-223ENST00000566472 CGRRF1Q99675 332 aa6.71□□□□□ -1.34
CLN3-223ENST00000566472 PAGR1Q9BTK6 254 aa6.71□□□□□ -1.34
CLN3-223ENST00000566472 KIFC3Q9BVG8 833 aa6.71□□□□□ -1.34
CLN3-223ENST00000566472 NUP85Q9BW27 656 aa6.71□□□□□ -1.34
CLN3-223ENST00000566472 TXLNGYQ9BZA5 131 aa6.71□□□□□ -1.34
CLN3-223ENST00000566472 DHX33Q9H6R0 707 aaKnown RBP6.71□□□□□ -1.34
CLN3-223ENST00000566472 ZNF302Q9NR11 478 aa6.71□□□□□ -1.34
CLN3-223ENST00000566472 AMACRQ9UHK6 382 aa6.71□□□□□ -1.34
CLN3-223ENST00000566472 CNTN6Q9UQ52 1028 aa6.71□□□□□ -1.34
CLN3-223ENST00000566472 TRPC6Q9Y210 931 aa6.71□□□□□ -1.34
CLN3-223ENST00000566472 AFG3L2Q9Y4W6 797 aa6.71□□□□□ -1.34
CLN3-223ENST00000566472 PCDHB2Q9Y5E7 798 aa6.71□□□□□ -1.34
CLN3-223ENST00000566472 NFS1Q9Y697 457 aa6.71□□□□□ -1.34
CLN3-223ENST00000566472 GJA3Q9Y6H8 435 aa6.71□□□□□ -1.34
CLN3-223ENST00000566472 ADGRA3Q8IWK6 1321 aa6.71□□□□□ -1.34
CLN3-223ENST00000566472 ZNF541Q9H0D2 1346 aa6.71□□□□□ -1.34
CLN3-223ENST00000566472 RLFQ13129 1914 aa6.7□□□□□ -1.34
CLN3-223ENST00000566472 LOC102724159A0A0B4J2E5 919 aa6.7□□□□□ -1.34
CLN3-223ENST00000566472 DAPK3O43293 454 aa6.7□□□□□ -1.34
CLN3-223ENST00000566472 SPOPO43791 374 aa6.7□□□□□ -1.34
CLN3-223ENST00000566472 GRIN3BO60391 1043 aa6.7□□□□□ -1.34
CLN3-223ENST00000566472 C4BPAP04003 597 aaKnown RBP6.7□□□□□ -1.34
CLN3-223ENST00000566472 CYP1A1P04798 512 aaPredicted RBP6.7□□□□□ -1.34
CLN3-223ENST00000566472 POTEJP0CG39 1038 aa6.7□□□□□ -1.34
CLN3-223ENST00000566472 TGFB3P10600 412 aa6.7□□□□□ -1.34
CLN3-223ENST00000566472 UNGP13051 313 aaPredicted RBP6.7□□□□□ -1.34
CLN3-223ENST00000566472 PIK3CAP42336 1068 aa6.7□□□□□ -1.34
CLN3-223ENST00000566472 PTGIRP43119 386 aa6.7□□□□□ -1.34
CLN3-223ENST00000566472 ALDH5A1P51649 535 aaPredicted RBP6.7□□□□□ -1.34
CLN3-223ENST00000566472 CDR1P51861 262 aa6.7□□□□□ -1.34
CLN3-223ENST00000566472 CENPCQ03188 943 aa6.7□□□□□ -1.34
CLN3-223ENST00000566472 ZNF844Q08AG5 666 aa6.7□□□□□ -1.34
CLN3-223ENST00000566472 NEDD9Q14511 834 aa6.7□□□□□ -1.34
CLN3-223ENST00000566472 MESDQ14696 234 aa6.7□□□□□ -1.34
CLN3-223ENST00000566472 PWP2Q15269 919 aaKnown RBP6.7□□□□□ -1.34
CLN3-223ENST00000566472 SURF1Q15526 300 aa6.7□□□□□ -1.34
CLN3-223ENST00000566472 TARBP2Q15633 366 aaKnown RBP6.7□□□□□ -1.34
CLN3-223ENST00000566472 MTERF2Q49AM1 385 aa6.7□□□□□ -1.34
CLN3-223ENST00000566472 DNAJC21Q5F1R6 531 aaKnown RBP6.7□□□□□ -1.34
CLN3-223ENST00000566472 CEP85LQ5SZL2 805 aa6.7□□□□□ -1.34
CLN3-223ENST00000566472 LIN9Q5TKA1 542 aa6.7□□□□□ -1.34
CLN3-223ENST00000566472 KCNV1Q6PIU1 500 aa6.7□□□□□ -1.34
CLN3-223ENST00000566472 SLC47A2Q86VL8 602 aa6.7□□□□□ -1.34
CLN3-223ENST00000566472 MCOLN2Q8IZK6 566 aa6.7□□□□□ -1.34
CLN3-223ENST00000566472 PRELID2Q8N945 189 aa6.7□□□□□ -1.34
CLN3-223ENST00000566472 ZSWIM2Q8NEG5 633 aa6.7□□□□□ -1.34
CLN3-223ENST00000566472 ASAP3Q8TDY4 903 aa6.7□□□□□ -1.34
CLN3-223ENST00000566472 SLC7A3Q8WY07 619 aa6.7□□□□□ -1.34
CLN3-223ENST00000566472 ZKSCAN4Q969J2 545 aaPredicted RBP6.7□□□□□ -1.34
CLN3-223ENST00000566472 VCPIP1Q96JH7 1222 aa6.7□□□□□ -1.34
CLN3-223ENST00000566472 FAM213AQ9BRX8 229 aa6.7□□□□□ -1.34
CLN3-223ENST00000566472 TMEM109Q9BVC6 243 aa6.7□□□□□ -1.34
CLN3-223ENST00000566472 NEUROG2Q9H2A3 272 aa6.7□□□□□ -1.34
CLN3-223ENST00000566472 LRRC19Q9H756 370 aa6.7□□□□□ -1.34
CLN3-223ENST00000566472 NRBP2Q9NSY0 501 aa6.7□□□□□ -1.34
CLN3-223ENST00000566472 ZDHHC18Q9NUE0 388 aa6.7□□□□□ -1.34
CLN3-223ENST00000566472 GGA3Q9NZ52 723 aa6.7□□□□□ -1.34
CLN3-223ENST00000566472 GPRC5DQ9NZD1 345 aa6.7□□□□□ -1.34
CLN3-223ENST00000566472 CNOT8Q9UFF9 292 aaKnown RBP6.7□□□□□ -1.34
CLN3-223ENST00000566472 MTRF1LQ9UGC7 380 aaKnown RBP6.7□□□□□ -1.34
CLN3-223ENST00000566472 GGA2Q9UJY4 613 aa6.7□□□□□ -1.34
CLN3-223ENST00000566472 AGO2Q9UKV8 859 aaKnown RBP6.7□□□□□ -1.34
CLN3-223ENST00000566472 BCS1LQ9Y276 419 aa6.7□□□□□ -1.34
CLN3-223ENST00000566472 RRP15Q9Y3B9 282 aaKnown RBP6.7□□□□□ -1.34
CLN3-223ENST00000566472 SCINQ9Y6U3 715 aa6.7□□□□□ -1.34
CLN3-223ENST00000566472 ARID2Q68CP9 1835 aa6.7□□□□□ -1.34
CLN3-223ENST00000566472 PASKQ96RG2 1323 aa6.7□□□□□ -1.34
CLN3-223ENST00000566472 SIP14410 1827 aa6.69□□□□□ -1.34
CLN3-223ENST00000566472 A0A0B4J269 797 aa6.69□□□□□ -1.34
CLN3-223ENST00000566472 TMEM110-MUSTN1A8MSY1 372 aa6.69□□□□□ -1.34
CLN3-223ENST00000566472 IRF6O14896 467 aa6.69□□□□□ -1.34
CLN3-223ENST00000566472 FSCN2O14926 492 aa6.69□□□□□ -1.34
CLN3-223ENST00000566472 PSTPIP1O43586 416 aa6.69□□□□□ -1.34
CLN3-223ENST00000566472 ADCY3O60266 1144 aa6.69□□□□□ -1.34
CLN3-223ENST00000566472 ZBTB7AO95365 584 aa6.69□□□□□ -1.34
CLN3-223ENST00000566472 SLC25A27O95847 323 aa6.69□□□□□ -1.34
CLN3-223ENST00000566472 HLA-DRAP01903 254 aa6.69□□□□□ -1.34
CLN3-223ENST00000566472 KRT14P02533 472 aa6.69□□□□□ -1.34
CLN3-223ENST00000566472 PAEPP09466 180 aa6.69□□□□□ -1.34
CLN3-223ENST00000566472 CLTAP09496 248 aa6.69□□□□□ -1.34
CLN3-223ENST00000566472 DLATP10515 647 aaKnown RBP6.69□□□□□ -1.34
CLN3-223ENST00000566472 KRT5P13647 590 aa6.69□□□□□ -1.34
CLN3-223ENST00000566472 ACO1P21399 889 aaKnown RBP6.69□□□□□ -1.34
CLN3-223ENST00000566472 GLRA2P23416 452 aa6.69□□□□□ -1.34
CLN3-223ENST00000566472 COILP38432 576 aaPredicted RBP6.69□□□□□ -1.34
CLN3-223ENST00000566472 MDH1P40925 334 aaKnown RBP6.69□□□□□ -1.34
CLN3-223ENST00000566472 NSFP46459 744 aaKnown RBP6.69□□□□□ -1.34
CLN3-223ENST00000566472 EFNA5P52803 228 aa6.69□□□□□ -1.34
CLN3-223ENST00000566472 CAV1Q03135 178 aa6.69□□□□□ -1.34
CLN3-223ENST00000566472 DHX9Q08211 1270 aaKnown RBP6.69□□□□□ -1.34
CLN3-223ENST00000566472 ZNF211Q13398 564 aaPredicted RBP6.69□□□□□ -1.34
CLN3-223ENST00000566472 CUL2Q13617 745 aa6.69□□□□□ -1.34
CLN3-223ENST00000566472 SLMAPQ14BN4 828 aa6.69□□□□□ -1.34
CLN3-223ENST00000566472 SIX1Q15475 284 aaPredicted RBP6.69□□□□□ -1.34
CLN3-223ENST00000566472 TRADDQ15628 312 aa6.69□□□□□ -1.34
CLN3-223ENST00000566472 PTPROQ16827 1216 aa6.69□□□□□ -1.34
CLN3-223ENST00000566472 METTL7BQ6UX53 244 aa6.69□□□□□ -1.34
CLN3-223ENST00000566472 ZDHHC24Q6UX98 284 aa6.69□□□□□ -1.34
CLN3-223ENST00000566472 MICALCLQ6ZW33 695 aa6.69□□□□□ -1.34
CLN3-223ENST00000566472 B4GALNT4Q76KP1 1039 aa6.69□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms