RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 GPBP1Q86WP2 473 aa22.73■■□□□ 1.23
CLN3-219ENST00000565778 GPR65Q8IYL9 337 aa22.73■■□□□ 1.23
CLN3-219ENST00000565778 TMEM161BQ8NDZ6 487 aa22.73■■□□□ 1.23
CLN3-219ENST00000565778 ZBTB45Q96K62 511 aaPredicted RBP22.73■■□□□ 1.23
CLN3-219ENST00000565778 ACAP3Q96P50 834 aa22.73■■□□□ 1.23
CLN3-219ENST00000565778 MAN1C1Q9NR34 630 aa22.73■■□□□ 1.23
CLN3-219ENST00000565778 SMIM28A0A1B0GU29 152 aa22.72■■□□□ 1.23
CLN3-219ENST00000565778 K7ELQ4 463 aaPredicted RBP22.72■■□□□ 1.23
CLN3-219ENST00000565778 HARSP12081 509 aaKnown RBP22.72■■□□□ 1.23
CLN3-219ENST00000565778 PLCG1P19174 1290 aa22.72■■□□□ 1.23
CLN3-219ENST00000565778 MARCKSP29966 332 aaPredicted RBP22.72■■□□□ 1.23
CLN3-219ENST00000565778 ZXDAP98168 799 aa22.72■■□□□ 1.23
CLN3-219ENST00000565778 MCM6Q14566 821 aa22.72■■□□□ 1.23
CLN3-219ENST00000565778 FAM173BQ6P4H8 233 aa22.72■■□□□ 1.23
CLN3-219ENST00000565778 MPZL3Q6UWV2 235 aa22.72■■□□□ 1.23
CLN3-219ENST00000565778 PPP1R10Q96QC0 940 aaKnown RBP22.72■■□□□ 1.23
CLN3-219ENST00000565778 TTPALQ9BTX7 342 aa22.72■■□□□ 1.23
CLN3-219ENST00000565778 FNIP2Q9P278 1114 aa22.72■■□□□ 1.23
CLN3-219ENST00000565778 CCDC195A0A1B0GUA6 201 aa22.71■■□□□ 1.23
CLN3-219ENST00000565778 C2CD4DB7Z1M9 353 aa22.71■■□□□ 1.23
CLN3-219ENST00000565778 H0YCG3 227 aa22.71■■□□□ 1.23
CLN3-219ENST00000565778 B3GAT3O94766 335 aa22.71■■□□□ 1.23
CLN3-219ENST00000565778 KRT18P05783 430 aaKnown RBP22.71■■□□□ 1.23
CLN3-219ENST00000565778 MAPTP10636 758 aaKnown RBP22.71■■□□□ 1.23
CLN3-219ENST00000565778 RPL17P18621 184 aaKnown RBP22.71■■□□□ 1.23
CLN3-219ENST00000565778 MATR3P43243 847 aaKnown RBP eCLIP22.71■■□□□ 1.23
CLN3-219ENST00000565778 CREMQ03060 361 aa22.71■■□□□ 1.23
CLN3-219ENST00000565778 CEBPZQ03701 1054 aaKnown RBP22.71■■□□□ 1.23
CLN3-219ENST00000565778 ELAVL2Q12926 359 aaKnown RBP22.71■■□□□ 1.23
CLN3-219ENST00000565778 RESTQ13127 1097 aa22.71■■□□□ 1.23
CLN3-219ENST00000565778 SPECC1Q5M775 1068 aa22.71■■□□□ 1.23
CLN3-219ENST00000565778 DCLRE1AQ6PJP8 1040 aa22.71■■□□□ 1.23
CLN3-219ENST00000565778 PRSS55Q6UWB4 352 aaPredicted RBP22.71■■□□□ 1.23
CLN3-219ENST00000565778 MYCT1Q8N699 235 aa22.71■■□□□ 1.23
CLN3-219ENST00000565778 FEZF2Q8TBJ5 459 aa22.71■■□□□ 1.23
CLN3-219ENST00000565778 ZHX3Q9H4I2 956 aa22.71■■□□□ 1.23
CLN3-219ENST00000565778 BLOC1S4Q9NUP1 217 aa22.71■■□□□ 1.23
CLN3-219ENST00000565778 ODF2LQ9ULJ1 636 aa22.71■■□□□ 1.23
CLN3-219ENST00000565778 TOM1L1O75674 476 aa22.7■■□□□ 1.22
CLN3-219ENST00000565778 FAM13AO94988 1023 aa22.7■■□□□ 1.22
CLN3-219ENST00000565778 PROZP22891 400 aa22.7■■□□□ 1.22
CLN3-219ENST00000565778 DDIT3P35638 169 aa22.7■■□□□ 1.22
CLN3-219ENST00000565778 CLCNKBP51801 687 aa22.7■■□□□ 1.22
CLN3-219ENST00000565778 PTPAQ15257 358 aa22.7■■□□□ 1.22
CLN3-219ENST00000565778 RTP2Q5QGT7 225 aa22.7■■□□□ 1.22
CLN3-219ENST00000565778 ALKAL1Q6UXT8 129 aa22.7■■□□□ 1.22
CLN3-219ENST00000565778 C15orf39Q6ZRI6 1047 aa22.7■■□□□ 1.22
CLN3-219ENST00000565778 TRIM67Q6ZTA4 783 aa22.7■■□□□ 1.22
CLN3-219ENST00000565778 HAUS6Q7Z4H7 955 aa22.7■■□□□ 1.22
CLN3-219ENST00000565778 PLCD3Q8N3E9 789 aa22.7■■□□□ 1.22
CLN3-219ENST00000565778 RAD54LQ92698 747 aa22.7■■□□□ 1.22
CLN3-219ENST00000565778 BICD1Q96G01 975 aa22.7■■□□□ 1.22
CLN3-219ENST00000565778 EPSTI1Q96J88 318 aa22.7■■□□□ 1.22
CLN3-219ENST00000565778 UROC1Q96N76 676 aa22.7■■□□□ 1.22
CLN3-219ENST00000565778 REEP2Q9BRK0 252 aa22.7■■□□□ 1.22
CLN3-219ENST00000565778 CCSER1Q9C0I3 900 aa22.7■■□□□ 1.22
CLN3-219ENST00000565778 ANKFY1Q9P2R3 1169 aa22.7■■□□□ 1.22
CLN3-219ENST00000565778 CLDN3O15551 220 aa22.69■■□□□ 1.22
CLN3-219ENST00000565778 TGM5O43548 720 aa22.69■■□□□ 1.22
CLN3-219ENST00000565778 BRD1O95696 1058 aa22.69■■□□□ 1.22
CLN3-219ENST00000565778 C1RP00736 705 aa22.69■■□□□ 1.22
CLN3-219ENST00000565778 PTPN21Q16825 1174 aa22.69■■□□□ 1.22
CLN3-219ENST00000565778 XKR4Q5GH76 650 aa22.69■■□□□ 1.22
CLN3-219ENST00000565778 ZPBP2Q6X784 338 aa22.69■■□□□ 1.22
CLN3-219ENST00000565778 HFE2Q6ZVN8 426 aa22.69■■□□□ 1.22
CLN3-219ENST00000565778 TDRD5Q8NAT2 981 aaKnown RBP22.69■■□□□ 1.22
CLN3-219ENST00000565778 LRRC15Q8TF66 581 aa22.69■■□□□ 1.22
CLN3-219ENST00000565778 HDAC7Q8WUI4 952 aa22.69■■□□□ 1.22
CLN3-219ENST00000565778 PLEKHA4Q9H4M7 779 aa22.69■■□□□ 1.22
CLN3-219ENST00000565778 GOLGA2P5Q9HBQ8 144 aa22.69■■□□□ 1.22
CLN3-219ENST00000565778 SLC38A7Q9NVC3 462 aa22.69■■□□□ 1.22
CLN3-219ENST00000565778 CCDC39Q9UFE4 941 aa22.69■■□□□ 1.22
CLN3-219ENST00000565778 LIMD1Q9UGP4 676 aa22.69■■□□□ 1.22
CLN3-219ENST00000565778 SRPRBQ9Y5M8 271 aaKnown RBP22.69■■□□□ 1.22
CLN3-219ENST00000565778 TMEM221A6NGB7 291 aa22.68■■□□□ 1.22
CLN3-219ENST00000565778 M0R296 226 aa22.68■■□□□ 1.22
CLN3-219ENST00000565778 ABLIM1O14639 778 aa22.68■■□□□ 1.22
CLN3-219ENST00000565778 NCKAP1LP55160 1127 aa22.68■■□□□ 1.22
CLN3-219ENST00000565778 UPP1Q16831 310 aa22.68■■□□□ 1.22
CLN3-219ENST00000565778 SEZ6Q53EL9 994 aa22.68■■□□□ 1.22
CLN3-219ENST00000565778 PDXDC1Q6P996 788 aa22.68■■□□□ 1.22
CLN3-219ENST00000565778 LILRA6Q6PI73 481 aa22.68■■□□□ 1.22
CLN3-219ENST00000565778 USP49Q70CQ1 688 aa22.68■■□□□ 1.22
CLN3-219ENST00000565778 CMASQ8NFW8 434 aaPredicted RBP22.68■■□□□ 1.22
CLN3-219ENST00000565778 LNX1Q8TBB1 728 aaPredicted RBP22.68■■□□□ 1.22
CLN3-219ENST00000565778 PIK3R5Q8WYR1 880 aa22.68■■□□□ 1.22
CLN3-219ENST00000565778 LARP4BQ92615 738 aaKnown RBP22.68■■□□□ 1.22
CLN3-219ENST00000565778 ACSF2Q96CM8 615 aaPredicted RBP22.68■■□□□ 1.22
CLN3-219ENST00000565778 DDX27Q96GQ7 796 aaKnown RBP22.68■■□□□ 1.22
CLN3-219ENST00000565778 MFSD14AQ96MC6 490 aa22.68■■□□□ 1.22
CLN3-219ENST00000565778 ZSCAN16Q9H4T2 348 aaPredicted RBP22.68■■□□□ 1.22
CLN3-219ENST00000565778 MTMR6Q9Y217 621 aa22.68■■□□□ 1.22
CLN3-219ENST00000565778 USTQ9Y2C2 406 aa22.68■■□□□ 1.22
CLN3-219ENST00000565778 TRAPPC3O43617 180 aa22.67■■□□□ 1.22
CLN3-219ENST00000565778 STX6O43752 255 aa22.67■■□□□ 1.22
CLN3-219ENST00000565778 RFPL2O75678 378 aa22.67■■□□□ 1.22
CLN3-219ENST00000565778 IGFBP6P24592 240 aaPredicted RBP22.67■■□□□ 1.22
CLN3-219ENST00000565778 NOLC1Q14978 699 aaKnown RBP eCLIP22.67■■□□□ 1.22
CLN3-219ENST00000565778 PSMD5Q16401 504 aa22.67■■□□□ 1.22
CLN3-219ENST00000565778 CYP26C1Q6V0L0 522 aa22.67■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms