RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 CACNB1Q02641 598 aaPredicted RBP11.89□□□□□ -0.51
VPS39-208ENST00000564994 SIGLEC14Q08ET2 396 aa11.89□□□□□ -0.51
VPS39-208ENST00000564994 ZNF568Q3ZCX4 644 aa11.89□□□□□ -0.51
VPS39-208ENST00000564994 ARSHQ5FYA8 562 aa11.89□□□□□ -0.51
VPS39-208ENST00000564994 LILRA6Q6PI73 481 aa11.89□□□□□ -0.51
VPS39-208ENST00000564994 CD300LGQ6UXG3 332 aa11.89□□□□□ -0.51
VPS39-208ENST00000564994 ALKAL1Q6UXT8 129 aa11.89□□□□□ -0.51
VPS39-208ENST00000564994 C15orf39Q6ZRI6 1047 aa11.89□□□□□ -0.51
VPS39-208ENST00000564994 ZBTB33Q86T24 672 aa11.89□□□□□ -0.51
VPS39-208ENST00000564994 GPR65Q8IYL9 337 aa11.89□□□□□ -0.51
VPS39-208ENST00000564994 ZDHHC14Q8IZN3 488 aa11.89□□□□□ -0.51
VPS39-208ENST00000564994 KCTD17Q8N5Z5 321 aa11.89□□□□□ -0.51
VPS39-208ENST00000564994 TDRD5Q8NAT2 981 aaKnown RBP11.89□□□□□ -0.51
VPS39-208ENST00000564994 KREMEN2Q8NCW0 462 aa11.89□□□□□ -0.51
VPS39-208ENST00000564994 CMASQ8NFW8 434 aaPredicted RBP11.89□□□□□ -0.51
VPS39-208ENST00000564994 ZBTB45Q96K62 511 aaPredicted RBP11.89□□□□□ -0.51
VPS39-208ENST00000564994 TIPINQ9BVW5 301 aa11.89□□□□□ -0.51
VPS39-208ENST00000564994 MRPL4Q9BYD3 311 aaKnown RBP11.89□□□□□ -0.51
VPS39-208ENST00000564994 NT5C3AQ9H0P0 336 aa11.89□□□□□ -0.51
VPS39-208ENST00000564994 GOLGA2P5Q9HBQ8 144 aa11.89□□□□□ -0.51
VPS39-208ENST00000564994 FNIP2Q9P278 1114 aa11.89□□□□□ -0.51
VPS39-208ENST00000564994 USTQ9Y2C2 406 aa11.89□□□□□ -0.51
VPS39-208ENST00000564994 RBM19Q9Y4C8 960 aaKnown RBP11.89□□□□□ -0.51
VPS39-208ENST00000564994 SMIM28A0A1B0GU29 152 aa11.88□□□□□ -0.51
VPS39-208ENST00000564994 CCDC195A0A1B0GUA6 201 aa11.88□□□□□ -0.51
VPS39-208ENST00000564994 PAPLNO95428 1278 aa11.88□□□□□ -0.51
VPS39-208ENST00000564994 BRD1O95696 1058 aa11.88□□□□□ -0.51
VPS39-208ENST00000564994 PLS3P13797 630 aa11.88□□□□□ -0.51
VPS39-208ENST00000564994 CLCNKBP51801 687 aa11.88□□□□□ -0.51
VPS39-208ENST00000564994 SOX4Q06945 474 aaPredicted RBP11.88□□□□□ -0.51
VPS39-208ENST00000564994 SF3A1Q15459 793 aaKnown RBP11.88□□□□□ -0.51
VPS39-208ENST00000564994 XKR4Q5GH76 650 aa11.88□□□□□ -0.51
VPS39-208ENST00000564994 FAM171A1Q5VUB5 890 aa11.88□□□□□ -0.51
VPS39-208ENST00000564994 CCDC149Q6ZUS6 474 aa11.88□□□□□ -0.51
VPS39-208ENST00000564994 BRAPQ7Z569 592 aa11.88□□□□□ -0.51
VPS39-208ENST00000564994 CEP57Q86XR8 500 aa11.88□□□□□ -0.51
VPS39-208ENST00000564994 TMEM161BQ8NDZ6 487 aa11.88□□□□□ -0.51
VPS39-208ENST00000564994 LNX1Q8TBB1 728 aaPredicted RBP11.88□□□□□ -0.51
VPS39-208ENST00000564994 SPIRE2Q8WWL2 714 aa11.88□□□□□ -0.51
VPS39-208ENST00000564994 PIK3R5Q8WYR1 880 aa11.88□□□□□ -0.51
VPS39-208ENST00000564994 PBXIP1Q96AQ6 731 aa11.88□□□□□ -0.51
VPS39-208ENST00000564994 ZNF707Q96C28 371 aaPredicted RBP11.88□□□□□ -0.51
VPS39-208ENST00000564994 CDK5RAP3Q96JB5 506 aa11.88□□□□□ -0.51
VPS39-208ENST00000564994 AK8Q96MA6 479 aa11.88□□□□□ -0.51
VPS39-208ENST00000564994 MFSD14AQ96MC6 490 aa11.88□□□□□ -0.51
VPS39-208ENST00000564994 ZMAT2Q96NC0 199 aaKnown RBP11.88□□□□□ -0.51
VPS39-208ENST00000564994 CLSTN3Q9BQT9 956 aa11.88□□□□□ -0.51
VPS39-208ENST00000564994 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP11.88□□□□□ -0.51
VPS39-208ENST00000564994 BLOC1S4Q9NUP1 217 aa11.88□□□□□ -0.51
VPS39-208ENST00000564994 LIMD1Q9UGP4 676 aa11.88□□□□□ -0.51
VPS39-208ENST00000564994 SORCS3Q9UPU3 1222 aa11.88□□□□□ -0.51
VPS39-208ENST00000564994 VPS37CA5D8V6 355 aaPredicted RBP11.87□□□□□ -0.51
VPS39-208ENST00000564994 TMEM189-UBE2V1I3L0A0 370 aa11.87□□□□□ -0.51
VPS39-208ENST00000564994 ADAM12O43184 909 aa11.87□□□□□ -0.51
VPS39-208ENST00000564994 N4BP1O75113 896 aaKnown RBP11.87□□□□□ -0.51
VPS39-208ENST00000564994 B3GAT3O94766 335 aa11.87□□□□□ -0.51
VPS39-208ENST00000564994 C1RP00736 705 aa11.87□□□□□ -0.51
VPS39-208ENST00000564994 PDGFBP01127 241 aaPredicted RBP11.87□□□□□ -0.51
VPS39-208ENST00000564994 MAPTP10636 758 aaKnown RBP11.87□□□□□ -0.51
VPS39-208ENST00000564994 MCF2P10911 925 aa11.87□□□□□ -0.51
VPS39-208ENST00000564994 UPP1Q16831 310 aa11.87□□□□□ -0.51
VPS39-208ENST00000564994 MPZL3Q6UWV2 235 aa11.87□□□□□ -0.51
VPS39-208ENST00000564994 C3orf58Q8NDZ4 430 aa11.87□□□□□ -0.51
VPS39-208ENST00000564994 HDAC7Q8WUI4 952 aa11.87□□□□□ -0.51
VPS39-208ENST00000564994 SNX27Q96L92 541 aa11.87□□□□□ -0.51
VPS39-208ENST00000564994 TTPALQ9BTX7 342 aa11.87□□□□□ -0.51
VPS39-208ENST00000564994 CCDC94Q9BW85 323 aaPredicted RBP11.87□□□□□ -0.51
VPS39-208ENST00000564994 BACH2Q9BYV9 841 aa11.87□□□□□ -0.51
VPS39-208ENST00000564994 RHOBTB2Q9BYZ6 727 aa11.87□□□□□ -0.51
VPS39-208ENST00000564994 PLEKHA4Q9H4M7 779 aa11.87□□□□□ -0.51
VPS39-208ENST00000564994 KCND2Q9NZV8 630 aa11.87□□□□□ -0.51
VPS39-208ENST00000564994 DAXXQ9UER7 740 aaPredicted RBP11.87□□□□□ -0.51
VPS39-208ENST00000564994 CACNA1HO95180 2353 aa11.87□□□□□ -0.51
VPS39-208ENST00000564994 NOTCH4Q99466 2003 aa11.87□□□□□ -0.51
VPS39-208ENST00000564994 MYH15Q9Y2K3 1946 aa11.86□□□□□ -0.51
VPS39-208ENST00000564994 SLC26A4O43511 780 aa11.86□□□□□ -0.51
VPS39-208ENST00000564994 HARSP12081 509 aaKnown RBP11.86□□□□□ -0.51
VPS39-208ENST00000564994 PLCG1P19174 1290 aa11.86□□□□□ -0.51
VPS39-208ENST00000564994 FGFR3P22607 806 aa11.86□□□□□ -0.51
VPS39-208ENST00000564994 UBA7P41226 1012 aa11.86□□□□□ -0.51
VPS39-208ENST00000564994 NCKAP1LP55160 1127 aa11.86□□□□□ -0.51
VPS39-208ENST00000564994 CREMQ03060 361 aa11.86□□□□□ -0.51
VPS39-208ENST00000564994 RESTQ13127 1097 aa11.86□□□□□ -0.51
VPS39-208ENST00000564994 MTMR3Q13615 1198 aa11.86□□□□□ -0.51
VPS39-208ENST00000564994 DHX8Q14562 1220 aaKnown RBP11.86□□□□□ -0.51
VPS39-208ENST00000564994 KARSQ15046 597 aaKnown RBP11.86□□□□□ -0.51
VPS39-208ENST00000564994 PTPAQ15257 358 aa11.86□□□□□ -0.51
VPS39-208ENST00000564994 PSMD5Q16401 504 aa11.86□□□□□ -0.51
VPS39-208ENST00000564994 SEZ6Q53EL9 994 aa11.86□□□□□ -0.51
VPS39-208ENST00000564994 IER5LQ5T953 404 aa11.86□□□□□ -0.51
VPS39-208ENST00000564994 FAM173BQ6P4H8 233 aa11.86□□□□□ -0.51
VPS39-208ENST00000564994 DCLRE1AQ6PJP8 1040 aa11.86□□□□□ -0.51
VPS39-208ENST00000564994 RSPO2Q6UXX9 243 aaPredicted RBP11.86□□□□□ -0.51
VPS39-208ENST00000564994 APBB1IPQ7Z5R6 666 aaPredicted RBP11.86□□□□□ -0.51
VPS39-208ENST00000564994 PLCD3Q8N3E9 789 aa11.86□□□□□ -0.51
VPS39-208ENST00000564994 FBXL6Q8N531 539 aa11.86□□□□□ -0.51
VPS39-208ENST00000564994 SMG7Q92540 1137 aaKnown RBP11.86□□□□□ -0.51
VPS39-208ENST00000564994 REEP2Q9BRK0 252 aa11.86□□□□□ -0.51
VPS39-208ENST00000564994 TCHPQ9BT92 498 aa11.86□□□□□ -0.51
VPS39-208ENST00000564994 HAPLN2Q9GZV7 340 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms