RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 ANKRD63C9JTQ0 380 aa9.68□□□□□ -0.86
VPS39-207ENST00000563692 PMM2O15305 246 aa9.68□□□□□ -0.86
VPS39-207ENST00000563692 TREHO43280 583 aa9.68□□□□□ -0.86
VPS39-207ENST00000563692 TLL1O43897 1013 aa9.68□□□□□ -0.86
VPS39-207ENST00000563692 EXTL3O43909 919 aa9.68□□□□□ -0.86
VPS39-207ENST00000563692 KIF5CO60282 957 aa9.68□□□□□ -0.86
VPS39-207ENST00000563692 NDUFA10O95299 355 aa9.68□□□□□ -0.86
VPS39-207ENST00000563692 PIGRP01833 764 aa9.68□□□□□ -0.86
VPS39-207ENST00000563692 CXCL10P02778 98 aa9.68□□□□□ -0.86
VPS39-207ENST00000563692 SERPING1P05155 500 aa9.68□□□□□ -0.86
VPS39-207ENST00000563692 RPLP2P05387 115 aaKnown RBP9.68□□□□□ -0.86
VPS39-207ENST00000563692 SLC9A1P19634 815 aa9.68□□□□□ -0.86
VPS39-207ENST00000563692 RFX1P22670 979 aa9.68□□□□□ -0.86
VPS39-207ENST00000563692 IGFBP4P22692 258 aa9.68□□□□□ -0.86
VPS39-207ENST00000563692 PON1P27169 355 aa9.68□□□□□ -0.86
VPS39-207ENST00000563692 GTF2H1P32780 548 aa9.68□□□□□ -0.86
VPS39-207ENST00000563692 MATR3P43243 847 aaKnown RBP eCLIP9.68□□□□□ -0.86
VPS39-207ENST00000563692 MCCD1P59942 119 aaPredicted RBP9.68□□□□□ -0.86
VPS39-207ENST00000563692 CDC42EP1Q00587 391 aa9.68□□□□□ -0.86
VPS39-207ENST00000563692 POU5F1BQ06416 359 aa9.68□□□□□ -0.86
VPS39-207ENST00000563692 LAMTOR4Q0VGL1 99 aa9.68□□□□□ -0.86
VPS39-207ENST00000563692 PPFIA1Q13136 1202 aa9.68□□□□□ -0.86
VPS39-207ENST00000563692 SNRNP35Q16560 246 aaKnown RBP9.68□□□□□ -0.86
VPS39-207ENST00000563692 ARHGAP29Q52LW3 1261 aa9.68□□□□□ -0.86
VPS39-207ENST00000563692 KLHDC7AQ5VTJ3 777 aa9.68□□□□□ -0.86
VPS39-207ENST00000563692 EFCAB12Q6NXP0 572 aa9.68□□□□□ -0.86
VPS39-207ENST00000563692 TAF2Q6P1X5 1199 aa9.68□□□□□ -0.86
VPS39-207ENST00000563692 WDR59Q6PJI9 974 aa9.68□□□□□ -0.86
VPS39-207ENST00000563692 ZPBP2Q6X784 338 aa9.68□□□□□ -0.86
VPS39-207ENST00000563692 HERC6Q8IVU3 1022 aa9.68□□□□□ -0.86
VPS39-207ENST00000563692 PHF6Q8IWS0 365 aaKnown RBP eCLIP9.68□□□□□ -0.86
VPS39-207ENST00000563692 REXO1L1PQ8IX06 675 aa9.68□□□□□ -0.86
VPS39-207ENST00000563692 METTL13Q8N6R0 699 aa9.68□□□□□ -0.86
VPS39-207ENST00000563692 EHBP1Q8NDI1 1231 aa9.68□□□□□ -0.86
VPS39-207ENST00000563692 TMC2Q8TDI7 906 aa9.68□□□□□ -0.86
VPS39-207ENST00000563692 LMBR1Q8WVP7 490 aa9.68□□□□□ -0.86
VPS39-207ENST00000563692 BAP1Q92560 729 aa9.68□□□□□ -0.86
VPS39-207ENST00000563692 MFSD14AQ96MC6 490 aa9.68□□□□□ -0.86
VPS39-207ENST00000563692 EIF3CQ99613 913 aaKnown RBP9.68□□□□□ -0.86
VPS39-207ENST00000563692 MRPL4Q9BYD3 311 aaKnown RBP9.68□□□□□ -0.86
VPS39-207ENST00000563692 RNPEPQ9H4A4 650 aa9.68□□□□□ -0.86
VPS39-207ENST00000563692 PRDM12Q9H4Q4 367 aa9.68□□□□□ -0.86
VPS39-207ENST00000563692 NLRC4Q9NPP4 1024 aa9.68□□□□□ -0.86
VPS39-207ENST00000563692 SETD4Q9NVD3 440 aa9.68□□□□□ -0.86
VPS39-207ENST00000563692 AIPL1Q9NZN9 384 aa9.68□□□□□ -0.86
VPS39-207ENST00000563692 GCNT4Q9P109 453 aa9.68□□□□□ -0.86
VPS39-207ENST00000563692 YBX2Q9Y2T7 364 aaKnown RBP9.68□□□□□ -0.86
VPS39-207ENST00000563692 STYXL1Q9Y6J8 313 aa9.68□□□□□ -0.86
VPS39-207ENST00000563692 SSU72P8A0A1W2PR75 194 aa9.67□□□□□ -0.86
VPS39-207ENST00000563692 TULP1O00294 542 aaPredicted RBP9.67□□□□□ -0.86
VPS39-207ENST00000563692 AKR1B10O60218 316 aa9.67□□□□□ -0.86
VPS39-207ENST00000563692 NBNO60934 754 aa9.67□□□□□ -0.86
VPS39-207ENST00000563692 NOL4O94818 638 aa9.67□□□□□ -0.86
VPS39-207ENST00000563692 CA3P07451 260 aa9.67□□□□□ -0.86
VPS39-207ENST00000563692 CTSHP09668 335 aa9.67□□□□□ -0.86
VPS39-207ENST00000563692 SRGAP2CP0DJJ0 459 aa9.67□□□□□ -0.86
VPS39-207ENST00000563692 INSRRP14616 1297 aa9.67□□□□□ -0.86
VPS39-207ENST00000563692 UCHL3P15374 230 aa9.67□□□□□ -0.86
VPS39-207ENST00000563692 KLRC1P26715 233 aa9.67□□□□□ -0.86
VPS39-207ENST00000563692 ADSSP30520 456 aa9.67□□□□□ -0.86
VPS39-207ENST00000563692 HOXC8P31273 242 aa9.67□□□□□ -0.86
VPS39-207ENST00000563692 STAT1P42224 750 aa9.67□□□□□ -0.86
VPS39-207ENST00000563692 WDR5P61964 334 aaKnown RBP9.67□□□□□ -0.86
VPS39-207ENST00000563692 ETF1P62495 437 aaKnown RBP9.67□□□□□ -0.86
VPS39-207ENST00000563692 MYL7Q01449 175 aa9.67□□□□□ -0.86
VPS39-207ENST00000563692 CAPSQ13938 189 aa9.67□□□□□ -0.86
VPS39-207ENST00000563692 MTF1Q14872 753 aa9.67□□□□□ -0.86
VPS39-207ENST00000563692 ASIC2Q16515 512 aa9.67□□□□□ -0.86
VPS39-207ENST00000563692 MAPK6Q16659 721 aa9.67□□□□□ -0.86
VPS39-207ENST00000563692 TRIM71Q2Q1W2 868 aaKnown RBP9.67□□□□□ -0.86
VPS39-207ENST00000563692 VPS36Q86VN1 386 aa9.67□□□□□ -0.86
VPS39-207ENST00000563692 RHPN2Q8IUC4 686 aa9.67□□□□□ -0.86
VPS39-207ENST00000563692 RNF149Q8NC42 400 aa9.67□□□□□ -0.86
VPS39-207ENST00000563692 SEPT8Q92599 483 aa9.67□□□□□ -0.86
VPS39-207ENST00000563692 VWCEQ96DN2 955 aa9.67□□□□□ -0.86
VPS39-207ENST00000563692 FAM81BQ96LP2 452 aa9.67□□□□□ -0.86
VPS39-207ENST00000563692 FBXL18Q96ME1 805 aa9.67□□□□□ -0.86
VPS39-207ENST00000563692 DESI2Q9BSY9 194 aa9.67□□□□□ -0.86
VPS39-207ENST00000563692 TCHPQ9BT92 498 aa9.67□□□□□ -0.86
VPS39-207ENST00000563692 STK33Q9BYT3 514 aa9.67□□□□□ -0.86
VPS39-207ENST00000563692 GANQ9H2C0 597 aa9.67□□□□□ -0.86
VPS39-207ENST00000563692 HAUS4Q9H6D7 363 aa9.67□□□□□ -0.86
VPS39-207ENST00000563692 AGO2Q9UKV8 859 aaKnown RBP9.67□□□□□ -0.86
VPS39-207ENST00000563692 LAMA2P24043 3122 aaKnown RBP9.66□□□□□ -0.86
VPS39-207ENST00000563692 ADGRA3Q8IWK6 1321 aa9.66□□□□□ -0.86
VPS39-207ENST00000563692 GOLGA8IPA6NC78 632 aa9.66□□□□□ -0.86
VPS39-207ENST00000563692 GOLGA8JA6NMD2 632 aa9.66□□□□□ -0.86
VPS39-207ENST00000563692 ZBTB42B2RXF5 422 aa9.66□□□□□ -0.86
VPS39-207ENST00000563692 M0QZ92 97 aa9.66□□□□□ -0.86
VPS39-207ENST00000563692 DLL1O00548 723 aa9.66□□□□□ -0.86
VPS39-207ENST00000563692 EPHB6O15197 1021 aa9.66□□□□□ -0.86
VPS39-207ENST00000563692 CLDN3O15551 220 aa9.66□□□□□ -0.86
VPS39-207ENST00000563692 KRT86O43790 486 aa9.66□□□□□ -0.86
VPS39-207ENST00000563692 AMHP03971 560 aa9.66□□□□□ -0.86
VPS39-207ENST00000563692 TRIM49P0CI25 452 aa9.66□□□□□ -0.86
VPS39-207ENST00000563692 TRIM49CP0CI26 452 aa9.66□□□□□ -0.86
VPS39-207ENST00000563692 MYOGP15173 224 aa9.66□□□□□ -0.86
VPS39-207ENST00000563692 FERP16591 822 aa9.66□□□□□ -0.86
VPS39-207ENST00000563692 ANXA13P27216 316 aa9.66□□□□□ -0.86
VPS39-207ENST00000563692 CASQ1P31415 396 aa9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms