RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 HASPINQ8TF76 798 aa18.46■□□□□ 0.55
CLK3-210ENST00000563112 HDAC7Q8WUI4 952 aa18.46■□□□□ 0.55
CLK3-210ENST00000563112 ACAP3Q96P50 834 aa18.46■□□□□ 0.55
CLK3-210ENST00000563112 TTPALQ9BTX7 342 aa18.46■□□□□ 0.55
CLK3-210ENST00000563112 CXCL16Q9H2A7 254 aa18.46■□□□□ 0.55
CLK3-210ENST00000563112 MAN1C1Q9NR34 630 aa18.46■□□□□ 0.55
CLK3-210ENST00000563112 SLC38A7Q9NVC3 462 aa18.46■□□□□ 0.55
CLK3-210ENST00000563112 CACNG4Q9UBN1 327 aa18.46■□□□□ 0.55
CLK3-210ENST00000563112 NPHP3-ACAD11A0A0J9YXS1 232 aa18.45■□□□□ 0.54
CLK3-210ENST00000563112 SMIM28A0A1B0GU29 152 aa18.45■□□□□ 0.54
CLK3-210ENST00000563112 TOM1L1O75674 476 aa18.45■□□□□ 0.54
CLK3-210ENST00000563112 FAM13AO94988 1023 aa18.45■□□□□ 0.54
CLK3-210ENST00000563112 KIF4AO95239 1232 aa18.45■□□□□ 0.54
CLK3-210ENST00000563112 MAPTP10636 758 aaKnown RBP18.45■□□□□ 0.54
CLK3-210ENST00000563112 PLCG1P19174 1290 aa18.45■□□□□ 0.54
CLK3-210ENST00000563112 SCP2P22307 547 aa18.45■□□□□ 0.54
CLK3-210ENST00000563112 CACNB1Q02641 598 aaPredicted RBP18.45■□□□□ 0.54
CLK3-210ENST00000563112 KARSQ15046 597 aaKnown RBP18.45■□□□□ 0.54
CLK3-210ENST00000563112 ARSHQ5FYA8 562 aa18.45■□□□□ 0.54
CLK3-210ENST00000563112 PDXDC1Q6P996 788 aa18.45■□□□□ 0.54
CLK3-210ENST00000563112 DCLRE1AQ6PJP8 1040 aa18.45■□□□□ 0.54
CLK3-210ENST00000563112 CYP26C1Q6V0L0 522 aa18.45■□□□□ 0.54
CLK3-210ENST00000563112 PLCD3Q8N3E9 789 aa18.45■□□□□ 0.54
CLK3-210ENST00000563112 CEP120Q8N960 986 aa18.45■□□□□ 0.54
CLK3-210ENST00000563112 TDRD5Q8NAT2 981 aaKnown RBP18.45■□□□□ 0.54
CLK3-210ENST00000563112 CMASQ8NFW8 434 aaPredicted RBP18.45■□□□□ 0.54
CLK3-210ENST00000563112 RAD54LQ92698 747 aa18.45■□□□□ 0.54
CLK3-210ENST00000563112 PPP1R10Q96QC0 940 aaKnown RBP18.45■□□□□ 0.54
CLK3-210ENST00000563112 PLEKHA4Q9H4M7 779 aa18.45■□□□□ 0.54
CLK3-210ENST00000563112 FOXD4L1Q9NU39 408 aa18.45■□□□□ 0.54
CLK3-210ENST00000563112 CCDC39Q9UFE4 941 aa18.45■□□□□ 0.54
CLK3-210ENST00000563112 USTQ9Y2C2 406 aa18.45■□□□□ 0.54
CLK3-210ENST00000563112 CLIC4Q9Y696 253 aa18.45■□□□□ 0.54
CLK3-210ENST00000563112 TRIOO75962 3097 aa18.44■□□□□ 0.54
CLK3-210ENST00000563112 C2CD4DB7Z1M9 353 aa18.44■□□□□ 0.54
CLK3-210ENST00000563112 BRD1O95696 1058 aa18.44■□□□□ 0.54
CLK3-210ENST00000563112 HARSP12081 509 aaKnown RBP18.44■□□□□ 0.54
CLK3-210ENST00000563112 PROZP22891 400 aa18.44■□□□□ 0.54
CLK3-210ENST00000563112 MATR3P43243 847 aaKnown RBP eCLIP18.44■□□□□ 0.54
CLK3-210ENST00000563112 GRIN1Q05586 938 aa18.44■□□□□ 0.54
CLK3-210ENST00000563112 RESTQ13127 1097 aa18.44■□□□□ 0.54
CLK3-210ENST00000563112 MCM6Q14566 821 aa18.44■□□□□ 0.54
CLK3-210ENST00000563112 PTPN21Q16825 1174 aa18.44■□□□□ 0.54
CLK3-210ENST00000563112 RTP2Q5QGT7 225 aa18.44■□□□□ 0.54
CLK3-210ENST00000563112 ZPBP2Q6X784 338 aa18.44■□□□□ 0.54
CLK3-210ENST00000563112 TRIM67Q6ZTA4 783 aa18.44■□□□□ 0.54
CLK3-210ENST00000563112 CCDC149Q6ZUS6 474 aa18.44■□□□□ 0.54
CLK3-210ENST00000563112 HAUS6Q7Z4H7 955 aa18.44■□□□□ 0.54
CLK3-210ENST00000563112 GLYCTKQ8IVS8 523 aa18.44■□□□□ 0.54
CLK3-210ENST00000563112 MYCT1Q8N699 235 aa18.44■□□□□ 0.54
CLK3-210ENST00000563112 ACSF2Q96CM8 615 aaPredicted RBP18.44■□□□□ 0.54
CLK3-210ENST00000563112 BICD1Q96G01 975 aa18.44■□□□□ 0.54
CLK3-210ENST00000563112 MFSD14AQ96MC6 490 aa18.44■□□□□ 0.54
CLK3-210ENST00000563112 REEP2Q9BRK0 252 aa18.44■□□□□ 0.54
CLK3-210ENST00000563112 CCSER1Q9C0I3 900 aa18.44■□□□□ 0.54
CLK3-210ENST00000563112 ZSCAN16Q9H4T2 348 aaPredicted RBP18.44■□□□□ 0.54
CLK3-210ENST00000563112 BLOC1S4Q9NUP1 217 aa18.44■□□□□ 0.54
CLK3-210ENST00000563112 ANKFY1Q9P2R3 1169 aa18.44■□□□□ 0.54
CLK3-210ENST00000563112 TRIP11Q15643 1979 aa18.44■□□□□ 0.54
CLK3-210ENST00000563112 CCDC195A0A1B0GUA6 201 aa18.43■□□□□ 0.54
CLK3-210ENST00000563112 TMEM189-UBE2V1I3L0A0 370 aa18.43■□□□□ 0.54
CLK3-210ENST00000563112 CLDN3O15551 220 aa18.43■□□□□ 0.54
CLK3-210ENST00000563112 TRAPPC3O43617 180 aa18.43■□□□□ 0.54
CLK3-210ENST00000563112 TBCAO75347 108 aaKnown RBP18.43■□□□□ 0.54
CLK3-210ENST00000563112 B3GAT3O94766 335 aa18.43■□□□□ 0.54
CLK3-210ENST00000563112 SPATA31D3P0C874 917 aa18.43■□□□□ 0.54
CLK3-210ENST00000563112 RPL17P18621 184 aaKnown RBP18.43■□□□□ 0.54
CLK3-210ENST00000563112 MARCKSP29966 332 aaPredicted RBP18.43■□□□□ 0.54
CLK3-210ENST00000563112 TXLNAP40222 546 aa18.43■□□□□ 0.54
CLK3-210ENST00000563112 NCKAP1LP55160 1127 aa18.43■□□□□ 0.54
CLK3-210ENST00000563112 NOLC1Q14978 699 aaKnown RBP eCLIP18.43■□□□□ 0.54
CLK3-210ENST00000563112 PTPAQ15257 358 aa18.43■□□□□ 0.54
CLK3-210ENST00000563112 PSMD5Q16401 504 aa18.43■□□□□ 0.54
CLK3-210ENST00000563112 XKR4Q5GH76 650 aa18.43■□□□□ 0.54
CLK3-210ENST00000563112 PRSS55Q6UWB4 352 aaPredicted RBP18.43■□□□□ 0.54
CLK3-210ENST00000563112 ALKAL1Q6UXT8 129 aa18.43■□□□□ 0.54
CLK3-210ENST00000563112 PDZRN4Q6ZMN7 1036 aaPredicted RBP18.43■□□□□ 0.54
CLK3-210ENST00000563112 SPATA31D4Q6ZUB0 917 aa18.43■□□□□ 0.54
CLK3-210ENST00000563112 OTOP3Q7RTS5 596 aa18.43■□□□□ 0.54
CLK3-210ENST00000563112 ZDHHC14Q8IZN3 488 aa18.43■□□□□ 0.54
CLK3-210ENST00000563112 PIK3R5Q8WYR1 880 aa18.43■□□□□ 0.54
CLK3-210ENST00000563112 LARP4BQ92615 738 aaKnown RBP18.43■□□□□ 0.54
CLK3-210ENST00000563112 DDX27Q96GQ7 796 aaKnown RBP18.43■□□□□ 0.54
CLK3-210ENST00000563112 ZBTB45Q96K62 511 aaPredicted RBP18.43■□□□□ 0.54
CLK3-210ENST00000563112 ZHX3Q9H4I2 956 aa18.43■□□□□ 0.54
CLK3-210ENST00000563112 PARVGQ9HBI0 331 aa18.43■□□□□ 0.54
CLK3-210ENST00000563112 ARIH1Q9Y4X5 557 aaPredicted RBP18.43■□□□□ 0.54
CLK3-210ENST00000563112 SRPRBQ9Y5M8 271 aaKnown RBP18.43■□□□□ 0.54
CLK3-210ENST00000563112 TMEM221A6NGB7 291 aa18.42■□□□□ 0.54
CLK3-210ENST00000563112 M0R296 226 aa18.42■□□□□ 0.54
CLK3-210ENST00000563112 ABLIM1O14639 778 aa18.42■□□□□ 0.54
CLK3-210ENST00000563112 TGM5O43548 720 aa18.42■□□□□ 0.54
CLK3-210ENST00000563112 STX6O43752 255 aa18.42■□□□□ 0.54
CLK3-210ENST00000563112 ABCD1P33897 745 aa18.42■□□□□ 0.54
CLK3-210ENST00000563112 DDIT3P35638 169 aa18.42■□□□□ 0.54
CLK3-210ENST00000563112 CLCNKBP51801 687 aa18.42■□□□□ 0.54
CLK3-210ENST00000563112 CEBPZQ03701 1054 aaKnown RBP18.42■□□□□ 0.54
CLK3-210ENST00000563112 SIGLEC14Q08ET2 396 aa18.42■□□□□ 0.54
CLK3-210ENST00000563112 UPP1Q16831 310 aa18.42■□□□□ 0.54
CLK3-210ENST00000563112 KREMEN2Q8NCW0 462 aa18.42■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms