RNA–Protein interactions for RNA: ENST00000560679.1

TPM1-225, Transcript of tropomyosin 1, humanhuman

TSL 3

Gene TPM1, Length 292 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-225ENST00000560679 RNF26Q9BY78 433 aaPredicted RBP11.03□□□□□ -0.64
TPM1-225ENST00000560679 CXCL16Q9H2A7 254 aa11.03□□□□□ -0.64
TPM1-225ENST00000560679 NDRG2Q9UN36 371 aaKnown RBP11.03□□□□□ -0.64
TPM1-225ENST00000560679 PPME1Q9Y570 386 aa11.03□□□□□ -0.64
TPM1-225ENST00000560679 CASTOR2A6NHX0 329 aa11.02□□□□□ -0.65
TPM1-225ENST00000560679 INO80B-WBP1J3KQ70 363 aa11.02□□□□□ -0.65
TPM1-225ENST00000560679 PTGESO14684 152 aa11.02□□□□□ -0.65
TPM1-225ENST00000560679 ZBTB39O15060 712 aa11.02□□□□□ -0.65
TPM1-225ENST00000560679 NPTXRO95502 500 aa11.02□□□□□ -0.65
TPM1-225ENST00000560679 IGFBP6P24592 240 aaPredicted RBP11.02□□□□□ -0.65
TPM1-225ENST00000560679 SATB1Q01826 763 aa11.02□□□□□ -0.65
TPM1-225ENST00000560679 SRSF5Q13243 272 aaKnown RBP11.02□□□□□ -0.65
TPM1-225ENST00000560679 CAPSQ13938 189 aa11.02□□□□□ -0.65
TPM1-225ENST00000560679 GAS6Q14393 721 aa11.02□□□□□ -0.65
TPM1-225ENST00000560679 PCBP1Q15365 356 aaKnown RBP eCLIP11.02□□□□□ -0.65
TPM1-225ENST00000560679 NAB2Q15742 525 aa11.02□□□□□ -0.65
TPM1-225ENST00000560679 CSRP2Q16527 193 aa11.02□□□□□ -0.65
TPM1-225ENST00000560679 AXDND1Q5T1B0 1012 aaPredicted RBP11.02□□□□□ -0.65
TPM1-225ENST00000560679 RNF20Q5VTR2 975 aa11.02□□□□□ -0.65
TPM1-225ENST00000560679 FAM171A1Q5VUB5 890 aa11.02□□□□□ -0.65
TPM1-225ENST00000560679 MOXD1Q6UVY6 613 aa11.02□□□□□ -0.65
TPM1-225ENST00000560679 MAMSTRQ6ZN01 415 aa11.02□□□□□ -0.65
TPM1-225ENST00000560679 PRR23BQ6ZRT6 265 aa11.02□□□□□ -0.65
TPM1-225ENST00000560679 CELF5Q8N6W0 485 aaKnown RBP11.02□□□□□ -0.65
TPM1-225ENST00000560679 DNASE1L2Q92874 299 aa11.02□□□□□ -0.65
TPM1-225ENST00000560679 MCRS1Q96EZ8 462 aa11.02□□□□□ -0.65
TPM1-225ENST00000560679 LXNQ9BS40 222 aa11.02□□□□□ -0.65
TPM1-225ENST00000560679 SLC26A6Q9BXS9 759 aa11.02□□□□□ -0.65
TPM1-225ENST00000560679 TRIM6Q9C030 488 aaPredicted RBP11.02□□□□□ -0.65
TPM1-225ENST00000560679 KCNMB3Q9NPA1 279 aa11.02□□□□□ -0.65
TPM1-225ENST00000560679 GDE1Q9NZC3 331 aa11.02□□□□□ -0.65
TPM1-225ENST00000560679 ANGPTL2Q9UKU9 493 aa11.02□□□□□ -0.65
TPM1-225ENST00000560679 RAB23Q9ULC3 237 aa11.02□□□□□ -0.65
TPM1-225ENST00000560679 MRPS17Q9Y2R5 130 aaKnown RBP11.02□□□□□ -0.65
TPM1-225ENST00000560679 IGF2RP11717 2491 aa11.02□□□□□ -0.65
TPM1-225ENST00000560679 NCANO14594 1321 aa11.02□□□□□ -0.65
TPM1-225ENST00000560679 RALGAPA1Q6GYQ0 2036 aa11.01□□□□□ -0.65
TPM1-225ENST00000560679 ASAP2O43150 1006 aa11.01□□□□□ -0.65
TPM1-225ENST00000560679 RHOP08100 348 aa11.01□□□□□ -0.65
TPM1-225ENST00000560679 HOXB3P14651 431 aaPredicted RBP11.01□□□□□ -0.65
TPM1-225ENST00000560679 IFNAR1P17181 557 aa11.01□□□□□ -0.65
TPM1-225ENST00000560679 KCNA4P22459 653 aa11.01□□□□□ -0.65
TPM1-225ENST00000560679 YWHABP31946 246 aaKnown RBP11.01□□□□□ -0.65
TPM1-225ENST00000560679 OR1D2P34982 312 aa11.01□□□□□ -0.65
TPM1-225ENST00000560679 NRLP54845 237 aa11.01□□□□□ -0.65
TPM1-225ENST00000560679 TUSC3Q13454 348 aa11.01□□□□□ -0.65
TPM1-225ENST00000560679 COL9A2Q14055 689 aaPredicted RBP11.01□□□□□ -0.65
TPM1-225ENST00000560679 RAB33AQ14088 237 aa11.01□□□□□ -0.65
TPM1-225ENST00000560679 GRM2Q14416 872 aa11.01□□□□□ -0.65
TPM1-225ENST00000560679 WDR44Q5JSH3 913 aa11.01□□□□□ -0.65
TPM1-225ENST00000560679 SLC27A1Q6PCB7 646 aa11.01□□□□□ -0.65
TPM1-225ENST00000560679 CEP57Q86XR8 500 aa11.01□□□□□ -0.65
TPM1-225ENST00000560679 C4orf19Q8IY42 314 aa11.01□□□□□ -0.65
TPM1-225ENST00000560679 TCP11Q8WWU5 503 aa11.01□□□□□ -0.65
TPM1-225ENST00000560679 BRF1Q92994 677 aa11.01□□□□□ -0.65
TPM1-225ENST00000560679 ELSPBP1Q96BH3 223 aa11.01□□□□□ -0.65
TPM1-225ENST00000560679 MTRQ99707 1265 aa11.01□□□□□ -0.65
TPM1-225ENST00000560679 RGL1Q9NZL6 768 aa11.01□□□□□ -0.65
TPM1-225ENST00000560679 MTRRQ9UBK8 725 aa11.01□□□□□ -0.65
TPM1-225ENST00000560679 DDX25Q9UHL0 483 aaKnown RBP11.01□□□□□ -0.65
TPM1-225ENST00000560679 MRPS23Q9Y3D9 190 aaKnown RBP11.01□□□□□ -0.65
TPM1-225ENST00000560679 GREB1Q4ZG55 1949 aa11.01□□□□□ -0.65
TPM1-225ENST00000560679 ANKRD11Q6UB99 2663 aaPredicted RBP11□□□□□ -0.65
TPM1-225ENST00000560679 HRO43593 1189 aa11□□□□□ -0.65
TPM1-225ENST00000560679 P4HBP07237 508 aaKnown RBP11□□□□□ -0.65
TPM1-225ENST00000560679 HOXC13P31276 330 aa11□□□□□ -0.65
TPM1-225ENST00000560679 CCR3P51677 355 aa11□□□□□ -0.65
TPM1-225ENST00000560679 NLRP5P59047 1200 aa11□□□□□ -0.65
TPM1-225ENST00000560679 SHC2P98077 582 aa11□□□□□ -0.65
TPM1-225ENST00000560679 POU5F1BQ06416 359 aa11□□□□□ -0.65
TPM1-225ENST00000560679 UVSSAQ2YD98 709 aa11□□□□□ -0.65
TPM1-225ENST00000560679 PRSS36Q5K4E3 855 aa11□□□□□ -0.65
TPM1-225ENST00000560679 N4BP2L1Q5TBK1 243 aaPredicted RBP11□□□□□ -0.65
TPM1-225ENST00000560679 Q6ZUG5 572 aa11□□□□□ -0.65
TPM1-225ENST00000560679 EXOC8Q8IYI6 725 aa11□□□□□ -0.65
TPM1-225ENST00000560679 HACE1Q8IYU2 909 aa11□□□□□ -0.65
TPM1-225ENST00000560679 TCEAL4Q96EI5 215 aa11□□□□□ -0.65
TPM1-225ENST00000560679 DYDC2Q96IM9 177 aa11□□□□□ -0.65
TPM1-225ENST00000560679 IER2Q9BTL4 223 aa11□□□□□ -0.65
TPM1-225ENST00000560679 NFKBIZQ9BYH8 718 aa11□□□□□ -0.65
TPM1-225ENST00000560679 NCOA5Q9HCD5 579 aaKnown RBP11□□□□□ -0.65
TPM1-225ENST00000560679 AVENQ9NQS1 362 aaPredicted RBP11□□□□□ -0.65
TPM1-225ENST00000560679 SH3GLB2Q9NR46 395 aa11□□□□□ -0.65
TPM1-225ENST00000560679 PARP2Q9UGN5 583 aa11□□□□□ -0.65
TPM1-225ENST00000560679 PCDHA4Q9UN74 947 aa11□□□□□ -0.65
TPM1-225ENST00000560679 PDCD11Q14690 1871 aaKnown RBP11□□□□□ -0.65
TPM1-225ENST00000560679 A0A1B0GUA9 196 aa10.99□□□□□ -0.65
TPM1-225ENST00000560679 TTLL13PA6NNM8 815 aa10.99□□□□□ -0.65
TPM1-225ENST00000560679 CHURC1-FNTBB4DL54 471 aa10.99□□□□□ -0.65
TPM1-225ENST00000560679 K7ESF4 209 aa10.99□□□□□ -0.65
TPM1-225ENST00000560679 TM4SF5O14894 197 aa10.99□□□□□ -0.65
TPM1-225ENST00000560679 DKC1O60832 514 aaKnown RBP eCLIP10.99□□□□□ -0.65
TPM1-225ENST00000560679 CHRNB1P11230 501 aa10.99□□□□□ -0.65
TPM1-225ENST00000560679 GLRA2P23416 452 aa10.99□□□□□ -0.65
TPM1-225ENST00000560679 CCR2P41597 374 aa10.99□□□□□ -0.65
TPM1-225ENST00000560679 FNTBP49356 437 aa10.99□□□□□ -0.65
TPM1-225ENST00000560679 AKAP17AQ02040 695 aaKnown RBP10.99□□□□□ -0.65
TPM1-225ENST00000560679 CYP4A11Q02928 519 aa10.99□□□□□ -0.65
TPM1-225ENST00000560679 SPIRE1Q08AE8 756 aa10.99□□□□□ -0.65
TPM1-225ENST00000560679 SIM2Q14190 667 aaPredicted RBP10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms