RNA–Protein interactions for RNA: ENST00000559886.1

HERC1-205, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 1 (best)

Gene HERC1, Length 2,462 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-205ENST00000559886 MBTPS1Q14703 1052 aa13.2□□□□□ -0.3
HERC1-205ENST00000559886 SV2AQ7L0J3 742 aa13.2□□□□□ -0.3
HERC1-205ENST00000559886 PAWRQ96IZ0 340 aaKnown RBP13.2□□□□□ -0.3
HERC1-205ENST00000559886 ACAP3Q96P50 834 aa13.2□□□□□ -0.3
HERC1-205ENST00000559886 TRIM6Q9C030 488 aaPredicted RBP13.2□□□□□ -0.3
HERC1-205ENST00000559886 C11orf49Q9H6J7 331 aa13.2□□□□□ -0.3
HERC1-205ENST00000559886 PLCB1Q9NQ66 1216 aa13.2□□□□□ -0.3
HERC1-205ENST00000559886 FAM207AQ9NSI2 230 aaPredicted RBP13.2□□□□□ -0.3
HERC1-205ENST00000559886 COQ4Q9Y3A0 265 aa13.2□□□□□ -0.3
HERC1-205ENST00000559886 PDCD11Q14690 1871 aaKnown RBP13.2□□□□□ -0.3
HERC1-205ENST00000559886 TANC1Q9C0D5 1861 aa13.2□□□□□ -0.3
HERC1-205ENST00000559886 TTC26A0AVF1 554 aa13.2□□□□□ -0.3
HERC1-205ENST00000559886 TULP1O00294 542 aaPredicted RBP13.2□□□□□ -0.3
HERC1-205ENST00000559886 CASP14P31944 242 aa13.2□□□□□ -0.3
HERC1-205ENST00000559886 FXR1P51114 621 aaKnown RBP eCLIP13.2□□□□□ -0.3
HERC1-205ENST00000559886 TLE2Q04725 743 aa13.2□□□□□ -0.3
HERC1-205ENST00000559886 CETN1Q12798 172 aa13.2□□□□□ -0.3
HERC1-205ENST00000559886 SLC10A6Q3KNW5 377 aa13.2□□□□□ -0.3
HERC1-205ENST00000559886 TRIM60Q495X7 471 aa13.2□□□□□ -0.3
HERC1-205ENST00000559886 EPC2Q52LR7 807 aa13.2□□□□□ -0.3
HERC1-205ENST00000559886 TWF2Q6IBS0 349 aaKnown RBP13.2□□□□□ -0.3
HERC1-205ENST00000559886 LRRC8DQ7L1W4 858 aa13.2□□□□□ -0.3
HERC1-205ENST00000559886 WDR49Q8IV35 697 aa13.2□□□□□ -0.3
HERC1-205ENST00000559886 NEK11Q8NG66 645 aa13.2□□□□□ -0.3
HERC1-205ENST00000559886 LMO3Q8TAP4 145 aa13.2□□□□□ -0.3
HERC1-205ENST00000559886 CPLX3Q8WVH0 158 aa13.2□□□□□ -0.3
HERC1-205ENST00000559886 FAM212AQ96EL1 285 aa13.2□□□□□ -0.3
HERC1-205ENST00000559886 CCDC94Q9BW85 323 aaPredicted RBP13.2□□□□□ -0.3
HERC1-205ENST00000559886 LSM14BQ9BX40 385 aaKnown RBP13.2□□□□□ -0.3
HERC1-205ENST00000559886 CAPN11Q9UMQ6 739 aa13.2□□□□□ -0.3
HERC1-205ENST00000559886 A0A1W2PQJ5 194 aa13.19□□□□□ -0.3
HERC1-205ENST00000559886 RNF225M0QZC1 329 aaPredicted RBP13.19□□□□□ -0.3
HERC1-205ENST00000559886 EPHB6O15197 1021 aa13.19□□□□□ -0.3
HERC1-205ENST00000559886 NOL4O94818 638 aa13.19□□□□□ -0.3
HERC1-205ENST00000559886 C4BPAP04003 597 aaKnown RBP13.19□□□□□ -0.3
HERC1-205ENST00000559886 TPM1P09493 284 aa13.19□□□□□ -0.3
HERC1-205ENST00000559886 AP3M2P53677 418 aa13.19□□□□□ -0.3
HERC1-205ENST00000559886 FAAP100Q0VG06 881 aa13.19□□□□□ -0.3
HERC1-205ENST00000559886 ARID5BQ14865 1188 aa13.19□□□□□ -0.3
HERC1-205ENST00000559886 ZACNQ401N2 412 aa13.19□□□□□ -0.3
HERC1-205ENST00000559886 LMBRD2Q68DH5 695 aaPredicted RBP13.19□□□□□ -0.3
HERC1-205ENST00000559886 TRIM65Q6PJ69 517 aa13.19□□□□□ -0.3
HERC1-205ENST00000559886 TC2NQ8N9U0 490 aa13.19□□□□□ -0.3
HERC1-205ENST00000559886 CCDC150Q8NCX0 1101 aa13.19□□□□□ -0.3
HERC1-205ENST00000559886 NXF3Q9H4D5 531 aaKnown RBP13.19□□□□□ -0.3
HERC1-205ENST00000559886 ASB7Q9H672 318 aa13.19□□□□□ -0.3
HERC1-205ENST00000559886 LACTBL1A8MY62 500 aa13.19□□□□□ -0.3
HERC1-205ENST00000559886 AKR1B15C9JRZ8 316 aaPredicted RBP13.19□□□□□ -0.3
HERC1-205ENST00000559886 DSC3Q14574 896 aa13.19□□□□□ -0.3
HERC1-205ENST00000559886 HS1BP3Q53T59 392 aa13.19□□□□□ -0.3
HERC1-205ENST00000559886 EHBP1Q8NDI1 1231 aa13.19□□□□□ -0.3
HERC1-205ENST00000559886 OR5B17Q8NGF7 314 aa13.19□□□□□ -0.3
HERC1-205ENST00000559886 TRAIPQ9BWF2 469 aa13.19□□□□□ -0.3
HERC1-205ENST00000559886 EDEM3Q9BZQ6 932 aa13.19□□□□□ -0.3
HERC1-205ENST00000559886 TMX1Q9H3N1 280 aa13.19□□□□□ -0.3
HERC1-205ENST00000559886 PLEKHA5Q9HAU0 1116 aa13.19□□□□□ -0.3
HERC1-205ENST00000559886 SIX2Q9NPC8 291 aa13.19□□□□□ -0.3
HERC1-205ENST00000559886 SNTG2Q9NY99 539 aa13.19□□□□□ -0.3
HERC1-205ENST00000559886 HES2Q9Y543 173 aa13.19□□□□□ -0.3
HERC1-205ENST00000559886 MFAP3LO75121 409 aa13.18□□□□□ -0.3
HERC1-205ENST00000559886 ACTN1P12814 892 aa13.18□□□□□ -0.3
HERC1-205ENST00000559886 ZSCAN20P17040 1043 aaPredicted RBP13.18□□□□□ -0.3
HERC1-205ENST00000559886 ADKP55263 362 aaKnown RBP13.18□□□□□ -0.3
HERC1-205ENST00000559886 APBA1Q02410 837 aa13.18□□□□□ -0.3
HERC1-205ENST00000559886 GOLGA8FQ08AF8 430 aa13.18□□□□□ -0.3
HERC1-205ENST00000559886 GOLGA8DPQ0D2H9 430 aa13.18□□□□□ -0.3
HERC1-205ENST00000559886 KLHDC7AQ5VTJ3 777 aa13.18□□□□□ -0.3
HERC1-205ENST00000559886 TDRD10Q5VZ19 366 aaKnown RBP13.18□□□□□ -0.3
HERC1-205ENST00000559886 NECAB2Q7Z6G3 386 aa13.18□□□□□ -0.3
HERC1-205ENST00000559886 CNGA4Q8IV77 575 aa13.18□□□□□ -0.3
HERC1-205ENST00000559886 LRRC8AQ8IWT6 810 aa13.18□□□□□ -0.3
HERC1-205ENST00000559886 CD302Q8IX05 232 aa13.18□□□□□ -0.3
HERC1-205ENST00000559886 EFCAB13Q8IY85 973 aa13.18□□□□□ -0.3
HERC1-205ENST00000559886 SMG8Q8ND04 991 aaKnown RBP13.18□□□□□ -0.3
HERC1-205ENST00000559886 FBXL13Q8NEE6 735 aa13.18□□□□□ -0.3
HERC1-205ENST00000559886 CACTINQ8WUQ7 758 aaKnown RBP13.18□□□□□ -0.3
HERC1-205ENST00000559886 TRIM44Q96DX7 344 aaPredicted RBP13.18□□□□□ -0.3
HERC1-205ENST00000559886 FAM84AQ96KN4 292 aa13.18□□□□□ -0.3
HERC1-205ENST00000559886 INTS2Q9H0H0 1204 aaKnown RBP13.18□□□□□ -0.3
HERC1-205ENST00000559886 GANQ9H2C0 597 aa13.18□□□□□ -0.3
HERC1-205ENST00000559886 LUC7L2Q9Y383 392 aaKnown RBP13.18□□□□□ -0.3
HERC1-205ENST00000559886 IPPQ9Y573 584 aa13.18□□□□□ -0.3
HERC1-205ENST00000559886 SCN5AQ14524 2016 aa13.18□□□□□ -0.3
HERC1-205ENST00000559886 DUOXA2Q1HG44 320 aa13.18□□□□□ -0.3
HERC1-205ENST00000559886 TAS1R2Q8TE23 839 aa13.18□□□□□ -0.3
HERC1-205ENST00000559886 FAM105AQ9NUU6 356 aa13.18□□□□□ -0.3
HERC1-205ENST00000559886 CEP72Q9P209 647 aa13.18□□□□□ -0.3
HERC1-205ENST00000559886 FBXL5Q9UKA1 691 aa13.18□□□□□ -0.3
HERC1-205ENST00000559886 PCDHB2Q9Y5E7 798 aa13.18□□□□□ -0.3
HERC1-205ENST00000559886 MKI67P46013 3256 aaKnown RBP13.18□□□□□ -0.3
HERC1-205ENST00000559886 TET1Q8NFU7 2136 aa13.17□□□□□ -0.3
HERC1-205ENST00000559886 MGEA5O60502 916 aa13.17□□□□□ -0.3
HERC1-205ENST00000559886 RECQL4O94761 1208 aa13.17□□□□□ -0.3
HERC1-205ENST00000559886 KRT9P35527 623 aa13.17□□□□□ -0.3
HERC1-205ENST00000559886 YARSP54577 528 aaKnown RBP13.17□□□□□ -0.3
HERC1-205ENST00000559886 ZBED6P86452 979 aa13.17□□□□□ -0.3
HERC1-205ENST00000559886 GPNMBQ14956 572 aa13.17□□□□□ -0.3
HERC1-205ENST00000559886 ALKAL1Q6UXT8 129 aa13.17□□□□□ -0.3
HERC1-205ENST00000559886 SEMA4DQ92854 862 aa13.17□□□□□ -0.3
HERC1-205ENST00000559886 SNX27Q96L92 541 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms