RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 MAP2K1Q02750 393 aaPredicted RBP7.81□□□□□ -1.16
VPS13C-206ENST00000558338 DNAJC21Q5F1R6 531 aaKnown RBP7.81□□□□□ -1.16
VPS13C-206ENST00000558338 AGBL2Q5U5Z8 902 aa7.81□□□□□ -1.16
VPS13C-206ENST00000558338 ANO5Q75V66 913 aa7.81□□□□□ -1.16
VPS13C-206ENST00000558338 DPH6Q7L8W6 267 aa7.81□□□□□ -1.16
VPS13C-206ENST00000558338 CBWD2Q8IUF1 395 aa7.81□□□□□ -1.16
VPS13C-206ENST00000558338 REPS2Q8NFH8 660 aa7.81□□□□□ -1.16
VPS13C-206ENST00000558338 ZNF564Q8TBZ8 553 aaPredicted RBP7.81□□□□□ -1.16
VPS13C-206ENST00000558338 PLEKHO2Q8TD55 490 aa7.81□□□□□ -1.16
VPS13C-206ENST00000558338 SLC20A1Q8WUM9 679 aa7.81□□□□□ -1.16
VPS13C-206ENST00000558338 MAIP1Q8WWC4 291 aa7.81□□□□□ -1.16
VPS13C-206ENST00000558338 PIK3R5Q8WYR1 880 aa7.81□□□□□ -1.16
VPS13C-206ENST00000558338 ARL8AQ96BM9 186 aa7.81□□□□□ -1.16
VPS13C-206ENST00000558338 BICD1Q96G01 975 aa7.81□□□□□ -1.16
VPS13C-206ENST00000558338 FMO2Q99518 471 aa7.81□□□□□ -1.16
VPS13C-206ENST00000558338 TMBIM4Q9HC24 238 aa7.81□□□□□ -1.16
VPS13C-206ENST00000558338 GPRC5CQ9NQ84 441 aa7.81□□□□□ -1.16
VPS13C-206ENST00000558338 C1orf112Q9NSG2 853 aa7.81□□□□□ -1.16
VPS13C-206ENST00000558338 RAB20Q9NX57 234 aa7.81□□□□□ -1.16
VPS13C-206ENST00000558338 TAS2R14Q9NYV8 317 aa7.81□□□□□ -1.16
VPS13C-206ENST00000558338 SLC9A2Q9UBY0 812 aa7.81□□□□□ -1.16
VPS13C-206ENST00000558338 SEPT9Q9UHD8 586 aaPredicted RBP7.81□□□□□ -1.16
VPS13C-206ENST00000558338 AMACRQ9UHK6 382 aa7.81□□□□□ -1.16
VPS13C-206ENST00000558338 ADAMTS5Q9UNA0 930 aa7.81□□□□□ -1.16
VPS13C-206ENST00000558338 RRP15Q9Y3B9 282 aaKnown RBP7.81□□□□□ -1.16
VPS13C-206ENST00000558338 ALG6Q9Y672 507 aa7.81□□□□□ -1.16
VPS13C-206ENST00000558338 SIP14410 1827 aa7.81□□□□□ -1.16
VPS13C-206ENST00000558338 RLFQ13129 1914 aa7.81□□□□□ -1.16
VPS13C-206ENST00000558338 KIAA1217Q5T5P2 1943 aa7.8□□□□□ -1.16
VPS13C-206ENST00000558338 ATXN2Q99700 1313 aaKnown RBP7.8□□□□□ -1.16
VPS13C-206ENST00000558338 HNRNPDLO14979 420 aaKnown RBP7.8□□□□□ -1.16
VPS13C-206ENST00000558338 TTI1O43156 1089 aa7.8□□□□□ -1.16
VPS13C-206ENST00000558338 EXTL3O43909 919 aa7.8□□□□□ -1.16
VPS13C-206ENST00000558338 KRT14P02533 472 aa7.8□□□□□ -1.16
VPS13C-206ENST00000558338 PTPRAP18433 802 aa7.8□□□□□ -1.16
VPS13C-206ENST00000558338 GMPSP49915 693 aaPredicted RBP7.8□□□□□ -1.16
VPS13C-206ENST00000558338 POU5F1Q01860 360 aaKnown RBP7.8□□□□□ -1.16
VPS13C-206ENST00000558338 PRKCEQ02156 737 aa7.8□□□□□ -1.16
VPS13C-206ENST00000558338 STRN3Q13033 797 aa7.8□□□□□ -1.16
VPS13C-206ENST00000558338 PTPROQ16827 1216 aa7.8□□□□□ -1.16
VPS13C-206ENST00000558338 XKR3Q5GH77 459 aa7.8□□□□□ -1.16
VPS13C-206ENST00000558338 NOL9Q5SY16 702 aaKnown RBP7.8□□□□□ -1.16
VPS13C-206ENST00000558338 CEP85LQ5SZL2 805 aa7.8□□□□□ -1.16
VPS13C-206ENST00000558338 DCAF12L1Q5VU92 463 aa7.8□□□□□ -1.16
VPS13C-206ENST00000558338 NOP9Q86U38 636 aaKnown RBP7.8□□□□□ -1.16
VPS13C-206ENST00000558338 HOOK3Q86VS8 718 aa7.8□□□□□ -1.16
VPS13C-206ENST00000558338 DNAAF5Q86Y56 855 aa7.8□□□□□ -1.16
VPS13C-206ENST00000558338 DNERQ8NFT8 737 aa7.8□□□□□ -1.16
VPS13C-206ENST00000558338 HELQQ8TDG4 1101 aa7.8□□□□□ -1.16
VPS13C-206ENST00000558338 ZNF653Q96CK0 615 aa7.8□□□□□ -1.16
VPS13C-206ENST00000558338 KREMEN1Q96MU8 473 aa7.8□□□□□ -1.16
VPS13C-206ENST00000558338 WRNIP1Q96S55 665 aa7.8□□□□□ -1.16
VPS13C-206ENST00000558338 ERP44Q9BS26 406 aa7.8□□□□□ -1.16
VPS13C-206ENST00000558338 MTRF1LQ9UGC7 380 aaKnown RBP7.8□□□□□ -1.16
VPS13C-206ENST00000558338 COG5Q9UP83 839 aa7.8□□□□□ -1.16
VPS13C-206ENST00000558338 SSC5DA1L4H1 1573 aa7.79□□□□□ -1.16
VPS13C-206ENST00000558338 GRIN2DO15399 1336 aa7.79□□□□□ -1.16
VPS13C-206ENST00000558338 GOLGA8IPA6NC78 632 aa7.79□□□□□ -1.16
VPS13C-206ENST00000558338 GOLGA8JA6NMD2 632 aa7.79□□□□□ -1.16
VPS13C-206ENST00000558338 ANKRD63C9JTQ0 380 aa7.79□□□□□ -1.16
VPS13C-206ENST00000558338 NFKBIEO00221 500 aa7.79□□□□□ -1.16
VPS13C-206ENST00000558338 EBAG9O00559 213 aa7.79□□□□□ -1.16
VPS13C-206ENST00000558338 CYP26A1O43174 497 aa7.79□□□□□ -1.16
VPS13C-206ENST00000558338 DAPK3O43293 454 aa7.79□□□□□ -1.16
VPS13C-206ENST00000558338 SPOPO43791 374 aa7.79□□□□□ -1.16
VPS13C-206ENST00000558338 PPFIA2O75334 1257 aa7.79□□□□□ -1.16
VPS13C-206ENST00000558338 SGPL1O95470 568 aa7.79□□□□□ -1.16
VPS13C-206ENST00000558338 LDHAP00338 332 aaKnown RBP7.79□□□□□ -1.16
VPS13C-206ENST00000558338 SUPT20HL2P0C7V6 817 aa7.79□□□□□ -1.16
VPS13C-206ENST00000558338 ITGA4P13612 1032 aa7.79□□□□□ -1.16
VPS13C-206ENST00000558338 CYP11B1P15538 503 aa7.79□□□□□ -1.16
VPS13C-206ENST00000558338 CHRNB2P17787 502 aa7.79□□□□□ -1.16
VPS13C-206ENST00000558338 ADSSP30520 456 aa7.79□□□□□ -1.16
VPS13C-206ENST00000558338 ICAM3P32942 547 aa7.79□□□□□ -1.16
VPS13C-206ENST00000558338 MAN1A1P33908 653 aa7.79□□□□□ -1.16
VPS13C-206ENST00000558338 FNTAP49354 379 aa7.79□□□□□ -1.16
VPS13C-206ENST00000558338 LIG4P49917 911 aa7.79□□□□□ -1.16
VPS13C-206ENST00000558338 FMO1Q01740 532 aa7.79□□□□□ -1.16
VPS13C-206ENST00000558338 SUPT20HL1Q3ZLR7 823 aa7.79□□□□□ -1.16
VPS13C-206ENST00000558338 WDR44Q5JSH3 913 aa7.79□□□□□ -1.16
VPS13C-206ENST00000558338 DUPD1Q68J44 220 aa7.79□□□□□ -1.16
VPS13C-206ENST00000558338 SLFN12LQ6IEE8 588 aa7.79□□□□□ -1.16
VPS13C-206ENST00000558338 ACAD10Q6JQN1 1059 aa7.79□□□□□ -1.16
VPS13C-206ENST00000558338 TRIM72Q6ZMU5 477 aa7.79□□□□□ -1.16
VPS13C-206ENST00000558338 B4GALNT4Q76KP1 1039 aa7.79□□□□□ -1.16
VPS13C-206ENST00000558338 TMC3Q7Z5M5 1100 aa7.79□□□□□ -1.16
VPS13C-206ENST00000558338 PALB2Q86YC2 1186 aa7.79□□□□□ -1.16
VPS13C-206ENST00000558338 EFCAB3Q8N7B9 438 aa7.79□□□□□ -1.16
VPS13C-206ENST00000558338 CHST13Q8NET6 341 aa7.79□□□□□ -1.16
VPS13C-206ENST00000558338 UBLCP1Q8WVY7 318 aaPredicted RBP7.79□□□□□ -1.16
VPS13C-206ENST00000558338 KHSRPQ92945 711 aaKnown RBP eCLIP7.79□□□□□ -1.163e-9■■■■■ 28.9
VPS13C-206ENST00000558338 CCDC127Q96BQ5 260 aa7.79□□□□□ -1.16
VPS13C-206ENST00000558338 SAAL1Q96ER3 474 aa7.79□□□□□ -1.16
VPS13C-206ENST00000558338 NUP85Q9BW27 656 aa7.79□□□□□ -1.16
VPS13C-206ENST00000558338 POLR3FQ9H1D9 316 aaPredicted RBP7.79□□□□□ -1.16
VPS13C-206ENST00000558338 AVENQ9NQS1 362 aaPredicted RBP7.79□□□□□ -1.16
VPS13C-206ENST00000558338 PDLIM7Q9NR12 457 aa7.79□□□□□ -1.16
VPS13C-206ENST00000558338 CYP26B1Q9NR63 512 aa7.79□□□□□ -1.16
VPS13C-206ENST00000558338 HOXC10Q9NYD6 342 aa7.79□□□□□ -1.16
VPS13C-206ENST00000558338 ARHGAP28Q9P2N2 729 aa7.79□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms