RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 HAUS2Q9NVX0 235 aa13.8□□□□□ -0.2
LDLR-207ENST00000558013 GTF3C4Q9UKN8 822 aa13.8□□□□□ -0.2
LDLR-207ENST00000558013 KRT17Q04695 432 aa13.79□□□□□ -0.2
LDLR-207ENST00000558013 GKAP1Q5VSY0 366 aaPredicted RBP13.79□□□□□ -0.2
LDLR-207ENST00000558013 PRAMEF18Q5VWM3 479 aa13.79□□□□□ -0.2
LDLR-207ENST00000558013 SEPT14Q6ZU15 432 aa13.79□□□□□ -0.2
LDLR-207ENST00000558013 ANKS1BQ7Z6G8 1248 aa13.79□□□□□ -0.2
LDLR-207ENST00000558013 SPATS2Q86XZ4 545 aaKnown RBP13.79□□□□□ -0.2
LDLR-207ENST00000558013 FLAD1Q8NFF5 587 aa13.79□□□□□ -0.2
LDLR-207ENST00000558013 ART4Q93070 314 aa13.79□□□□□ -0.2
LDLR-207ENST00000558013 DEFB129Q9H1M3 183 aa13.79□□□□□ -0.2
LDLR-207ENST00000558013 MAPTP10636 758 aaKnown RBP13.79□□□□□ -0.2
LDLR-207ENST00000558013 NF2P35240 595 aa13.79□□□□□ -0.2
LDLR-207ENST00000558013 GJC1P36383 396 aa13.79□□□□□ -0.2
LDLR-207ENST00000558013 ACOT2P49753 483 aa13.79□□□□□ -0.2
LDLR-207ENST00000558013 DMP1Q13316 513 aaPredicted RBP13.79□□□□□ -0.2
LDLR-207ENST00000558013 SEZ6Q53EL9 994 aa13.79□□□□□ -0.2
LDLR-207ENST00000558013 SGO2Q562F6 1265 aa13.79□□□□□ -0.2
LDLR-207ENST00000558013 ANKRD20A8PQ5CZ79 823 aa13.79□□□□□ -0.2
LDLR-207ENST00000558013 ARHGEF16Q5VV41 709 aa13.79□□□□□ -0.2
LDLR-207ENST00000558013 SWSAP1Q6NVH7 229 aa13.79□□□□□ -0.2
LDLR-207ENST00000558013 TAS1R3Q7RTX0 852 aa13.79□□□□□ -0.2
LDLR-207ENST00000558013 FMNL3Q8IVF7 1028 aa13.79□□□□□ -0.2
LDLR-207ENST00000558013 MAP4K3Q8IVH8 894 aa13.79□□□□□ -0.2
LDLR-207ENST00000558013 PGM2Q96G03 612 aa13.79□□□□□ -0.2
LDLR-207ENST00000558013 CDC42EP4Q9H3Q1 356 aaKnown RBP13.79□□□□□ -0.2
LDLR-207ENST00000558013 TMEM8AQ9HCN3 771 aa13.79□□□□□ -0.2
LDLR-207ENST00000558013 SLC40A1Q9NP59 571 aa13.79□□□□□ -0.2
LDLR-207ENST00000558013 PXMP2Q9NR77 195 aa13.79□□□□□ -0.2
LDLR-207ENST00000558013 TBC1D22BQ9NU19 505 aa13.79□□□□□ -0.2
LDLR-207ENST00000558013 PTPRJQ12913 1337 aa13.79□□□□□ -0.2
LDLR-207ENST00000558013 ATXN2Q99700 1313 aaKnown RBP13.79□□□□□ -0.2
LDLR-207ENST00000558013 C5orf60A6NFR6 353 aa13.79□□□□□ -0.2
LDLR-207ENST00000558013 PODXLO00592 558 aa13.79□□□□□ -0.2
LDLR-207ENST00000558013 RASGRF2O14827 1237 aa13.79□□□□□ -0.2
LDLR-207ENST00000558013 MTA2O94776 668 aa13.79□□□□□ -0.2
LDLR-207ENST00000558013 SCP2P22307 547 aa13.79□□□□□ -0.2
LDLR-207ENST00000558013 MAPK4P31152 587 aa13.79□□□□□ -0.2
LDLR-207ENST00000558013 GPC3P51654 580 aa13.79□□□□□ -0.2
LDLR-207ENST00000558013 CYP24A1Q07973 514 aa13.79□□□□□ -0.2
LDLR-207ENST00000558013 PPP2R5EQ16537 467 aa13.79□□□□□ -0.2
LDLR-207ENST00000558013 ACAD10Q6JQN1 1059 aa13.79□□□□□ -0.2
LDLR-207ENST00000558013 ATG4CQ96DT6 458 aa13.79□□□□□ -0.2
LDLR-207ENST00000558013 ELAC2Q9BQ52 826 aaKnown RBP13.79□□□□□ -0.2
LDLR-207ENST00000558013 KLHL11Q9NVR0 708 aa13.79□□□□□ -0.2
LDLR-207ENST00000558013 SLTMQ9NWH9 1034 aaKnown RBP eCLIP13.79□□□□□ -0.24e-7■■□□□ 11.6
LDLR-207ENST00000558013 ASIC3Q9UHC3 531 aa13.79□□□□□ -0.2
LDLR-207ENST00000558013 COL2A1P02458 1487 aaPredicted RBP13.79□□□□□ -0.2
LDLR-207ENST00000558013 MROH7Q68CQ1 1323 aa13.78□□□□□ -0.2
LDLR-207ENST00000558013 WDR64B1ANS9 1081 aa13.78□□□□□ -0.2
LDLR-207ENST00000558013 RGS20O76081 388 aa13.78□□□□□ -0.2
LDLR-207ENST00000558013 LYPLA2O95372 231 aa13.78□□□□□ -0.2
LDLR-207ENST00000558013 ECEL1O95672 775 aa13.78□□□□□ -0.2
LDLR-207ENST00000558013 CXCL9Q07325 125 aa13.78□□□□□ -0.2
LDLR-207ENST00000558013 ALCAMQ13740 583 aa13.78□□□□□ -0.2
LDLR-207ENST00000558013 CYP1B1Q16678 543 aa13.78□□□□□ -0.2
LDLR-207ENST00000558013 KYNUQ16719 465 aa13.78□□□□□ -0.2
LDLR-207ENST00000558013 ZBTB41Q5SVQ8 909 aa13.78□□□□□ -0.2
LDLR-207ENST00000558013 EXOC3L1Q86VI1 746 aa13.78□□□□□ -0.2
LDLR-207ENST00000558013 BICD1Q96G01 975 aa13.78□□□□□ -0.2
LDLR-207ENST00000558013 INTS9Q9NV88 658 aaKnown RBP13.78□□□□□ -0.2
LDLR-207ENST00000558013 MTRF1LQ9UGC7 380 aaKnown RBP13.78□□□□□ -0.2
LDLR-207ENST00000558013 MTUS1Q9ULD2 1270 aa13.78□□□□□ -0.2
LDLR-207ENST00000558013 CD2APQ9Y5K6 639 aa13.78□□□□□ -0.2
LDLR-207ENST00000558013 TBC1D12O60347 775 aa13.78□□□□□ -0.2
LDLR-207ENST00000558013 PEX10O60683 326 aa13.78□□□□□ -0.2
LDLR-207ENST00000558013 VIMP08670 466 aaKnown RBP13.78□□□□□ -0.2
LDLR-207ENST00000558013 SMTNP53814 917 aa13.78□□□□□ -0.2
LDLR-207ENST00000558013 TCEAL1Q15170 157 aa13.78□□□□□ -0.2
LDLR-207ENST00000558013 CLEC16AQ2KHT3 1053 aa13.78□□□□□ -0.2
LDLR-207ENST00000558013 CCT6BQ92526 530 aa13.78□□□□□ -0.2
LDLR-207ENST00000558013 ZBTB45Q96K62 511 aaPredicted RBP13.78□□□□□ -0.2
LDLR-207ENST00000558013 ST6GALNAC4Q9H4F1 302 aa13.78□□□□□ -0.2
LDLR-207ENST00000558013 XPNPEP1Q9NQW7 623 aa13.78□□□□□ -0.2
LDLR-207ENST00000558013 COQ4Q9Y3A0 265 aa13.78□□□□□ -0.2
LDLR-207ENST00000558013 ZNFX1Q9P2E3 1918 aaKnown RBP13.78□□□□□ -0.2
LDLR-207ENST00000558013 RARGP13631 454 aa13.77□□□□□ -0.2
LDLR-207ENST00000558013 SCTRP47872 440 aa13.77□□□□□ -0.2
LDLR-207ENST00000558013 MCF2L2Q86YR7 1114 aa13.77□□□□□ -0.2
LDLR-207ENST00000558013 RPAP3Q9H6T3 665 aaPredicted RBP13.77□□□□□ -0.2
LDLR-207ENST00000558013 TBK1Q9UHD2 729 aa13.77□□□□□ -0.2
LDLR-207ENST00000558013 SRRM3A6NNA2 597 aaPredicted RBP13.77□□□□□ -0.21
LDLR-207ENST00000558013 HGSO14964 777 aaPredicted RBP13.77□□□□□ -0.21
LDLR-207ENST00000558013 GH1P01241 217 aa13.77□□□□□ -0.21
LDLR-207ENST00000558013 ATP13A4Q4VNC1 1196 aa13.77□□□□□ -0.21
LDLR-207ENST00000558013 SUGP1Q8IWZ8 645 aaKnown RBP13.77□□□□□ -0.21
LDLR-207ENST00000558013 SUPT20HQ8NEM7 779 aa13.77□□□□□ -0.21
LDLR-207ENST00000558013 ZNF526Q8TF50 670 aaPredicted RBP13.77□□□□□ -0.21
LDLR-207ENST00000558013 MFSD14AQ96MC6 490 aa13.77□□□□□ -0.21
LDLR-207ENST00000558013 KLC4Q9NSK0 619 aa13.77□□□□□ -0.21
LDLR-207ENST00000558013 PASKQ96RG2 1323 aa13.77□□□□□ -0.21
LDLR-207ENST00000558013 RASSF9O75901 435 aa13.77□□□□□ -0.21
LDLR-207ENST00000558013 TCF4P15884 667 aa13.77□□□□□ -0.21
LDLR-207ENST00000558013 IVDP26440 423 aa13.77□□□□□ -0.21
LDLR-207ENST00000558013 ADCY2Q08462 1091 aa13.77□□□□□ -0.21
LDLR-207ENST00000558013 MPP2Q14168 576 aa13.77□□□□□ -0.21
LDLR-207ENST00000558013 NIPA1Q7RTP0 329 aa13.77□□□□□ -0.21
LDLR-207ENST00000558013 CCDC60Q8IWA6 550 aaPredicted RBP13.77□□□□□ -0.21
LDLR-207ENST00000558013 MCOLN2Q8IZK6 566 aa13.77□□□□□ -0.21
LDLR-207ENST00000558013 TTLL6Q8N841 843 aa13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms