RNA–Protein interactions for RNA: ENST00000557740.5

SHMT2-235, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-235ENST00000557740 NUBP1P53384 320 aa16.08■□□□□ 0.16
SHMT2-235ENST00000557740 TCF15Q12870 199 aa16.08■□□□□ 0.16
SHMT2-235ENST00000557740 NAB2Q15742 525 aa16.08■□□□□ 0.16
SHMT2-235ENST00000557740 ZNF568Q3ZCX4 644 aa16.08■□□□□ 0.16
SHMT2-235ENST00000557740 LIN9Q5TKA1 542 aa16.08■□□□□ 0.16
SHMT2-235ENST00000557740 TMX3Q96JJ7 454 aa16.08■□□□□ 0.16
SHMT2-235ENST00000557740 CCDC94Q9BW85 323 aaPredicted RBP16.08■□□□□ 0.16
SHMT2-235ENST00000557740 MRPL4Q9BYD3 311 aaKnown RBP16.08■□□□□ 0.16
SHMT2-235ENST00000557740 NT5C3AQ9H0P0 336 aa16.08■□□□□ 0.16
SHMT2-235ENST00000557740 CXCL16Q9H2A7 254 aa16.08■□□□□ 0.16
SHMT2-235ENST00000557740 KCNK12Q9HB15 430 aa16.08■□□□□ 0.16
SHMT2-235ENST00000557740 KMT5AQ9NQR1 393 aa16.08■□□□□ 0.16
SHMT2-235ENST00000557740 TOPORSQ9NS56 1045 aaPredicted RBP16.08■□□□□ 0.16
SHMT2-235ENST00000557740 IGSF9Q9P2J2 1179 aa16.08■□□□□ 0.16
SHMT2-235ENST00000557740 FBXL21Q9UKT6 434 aa16.08■□□□□ 0.16
SHMT2-235ENST00000557740 N4BP1O75113 896 aaKnown RBP16.07■□□□□ 0.16
SHMT2-235ENST00000557740 ZMYND10O75800 440 aa16.07■□□□□ 0.16
SHMT2-235ENST00000557740 GJB2P29033 226 aa16.07■□□□□ 0.16
SHMT2-235ENST00000557740 ATP2C1P98194 919 aaPredicted RBP16.07■□□□□ 0.16
SHMT2-235ENST00000557740 IL17AQ16552 155 aa16.07■□□□□ 0.16
SHMT2-235ENST00000557740 LILRA6Q6PI73 481 aa16.07■□□□□ 0.16
SHMT2-235ENST00000557740 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.07■□□□□ 0.16
SHMT2-235ENST00000557740 DAW1Q8N136 415 aa16.07■□□□□ 0.16
SHMT2-235ENST00000557740 CDK5RAP3Q96JB5 506 aa16.07■□□□□ 0.16
SHMT2-235ENST00000557740 UROC1Q96N76 676 aa16.07■□□□□ 0.16
SHMT2-235ENST00000557740 PPP1R10Q96QC0 940 aaKnown RBP16.07■□□□□ 0.16
SHMT2-235ENST00000557740 TIPINQ9BVW5 301 aa16.07■□□□□ 0.16
SHMT2-235ENST00000557740 PRKD2Q9BZL6 878 aa16.07■□□□□ 0.16
SHMT2-235ENST00000557740 IRF2BPLQ9H1B7 796 aa16.07■□□□□ 0.16
SHMT2-235ENST00000557740 CDT1Q9H211 546 aa16.07■□□□□ 0.16
SHMT2-235ENST00000557740 ARHGAP28Q9P2N2 729 aa16.07■□□□□ 0.16
SHMT2-235ENST00000557740 FBXW11Q9UKB1 542 aa16.07■□□□□ 0.16
SHMT2-235ENST00000557740 DUSP12Q9UNI6 340 aa16.07■□□□□ 0.16
SHMT2-235ENST00000557740 RBM19Q9Y4C8 960 aaKnown RBP16.07■□□□□ 0.16
SHMT2-235ENST00000557740 KMT2EQ8IZD2 1858 aa16.07■□□□□ 0.16
SHMT2-235ENST00000557740 TMEM189-UBE2V1I3L0A0 370 aa16.06■□□□□ 0.16
SHMT2-235ENST00000557740 B3GAT3O94766 335 aa16.06■□□□□ 0.16
SHMT2-235ENST00000557740 GRM5P41594 1212 aa16.06■□□□□ 0.16
SHMT2-235ENST00000557740 ASTLQ6HA08 431 aaPredicted RBP16.06■□□□□ 0.16
SHMT2-235ENST00000557740 RINT1Q6NUQ1 792 aa16.06■□□□□ 0.16
SHMT2-235ENST00000557740 C1orf186Q6ZWK4 172 aa16.06■□□□□ 0.16
SHMT2-235ENST00000557740 GET4Q7L5D6 327 aaPredicted RBP16.06■□□□□ 0.16
SHMT2-235ENST00000557740 KCNK18Q7Z418 384 aa16.06■□□□□ 0.16
SHMT2-235ENST00000557740 LNX1Q8TBB1 728 aaPredicted RBP16.06■□□□□ 0.16
SHMT2-235ENST00000557740 ACO2Q99798 780 aaKnown RBP16.06■□□□□ 0.16
SHMT2-235ENST00000557740 MMTAG2Q9BU76 263 aaKnown RBP16.06■□□□□ 0.16
SHMT2-235ENST00000557740 TMEM134Q9H6X4 195 aa16.06■□□□□ 0.16
SHMT2-235ENST00000557740 C17orf75Q9HAS0 396 aa16.06■□□□□ 0.16
SHMT2-235ENST00000557740 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP16.06■□□□□ 0.16
SHMT2-235ENST00000557740 EPS15L1Q9UBC2 864 aa16.06■□□□□ 0.16
SHMT2-235ENST00000557740 PLXNA3P51805 1871 aa16.05■□□□□ 0.16
SHMT2-235ENST00000557740 WDFY4Q6ZS81 3184 aa16.05■□□□□ 0.16
SHMT2-235ENST00000557740 VWA3AA6NCI4 1184 aa16.05■□□□□ 0.16
SHMT2-235ENST00000557740 SLC16A4O15374 487 aa16.05■□□□□ 0.16
SHMT2-235ENST00000557740 GALR2O43603 387 aaPredicted RBP16.05■□□□□ 0.16
SHMT2-235ENST00000557740 TRAPPC3O43617 180 aa16.05■□□□□ 0.16
SHMT2-235ENST00000557740 PAPLNO95428 1278 aa16.05■□□□□ 0.16
SHMT2-235ENST00000557740 HNRNPA1P09651 372 aaKnown RBP eCLIP16.05■□□□□ 0.16
SHMT2-235ENST00000557740 HARSP12081 509 aaKnown RBP16.05■□□□□ 0.16
SHMT2-235ENST00000557740 GUCY2CP25092 1073 aa16.05■□□□□ 0.16
SHMT2-235ENST00000557740 OSTNP61366 133 aa16.05■□□□□ 0.16
SHMT2-235ENST00000557740 STRN3Q13033 797 aa16.05■□□□□ 0.16
SHMT2-235ENST00000557740 MAPK7Q13164 816 aa16.05■□□□□ 0.16
SHMT2-235ENST00000557740 PPM1LQ5SGD2 360 aa16.05■□□□□ 0.16
SHMT2-235ENST00000557740 DCLRE1AQ6PJP8 1040 aa16.05■□□□□ 0.16
SHMT2-235ENST00000557740 TMEM105Q8N8V8 129 aa16.05■□□□□ 0.16
SHMT2-235ENST00000557740 CEP120Q8N960 986 aa16.05■□□□□ 0.16
SHMT2-235ENST00000557740 FLCNQ8NFG4 579 aa16.05■□□□□ 0.16
SHMT2-235ENST00000557740 ATOH1Q92858 354 aaPredicted RBP16.05■□□□□ 0.16
SHMT2-235ENST00000557740 MYADMQ96S97 322 aa16.05■□□□□ 0.16
SHMT2-235ENST00000557740 PHOX2BQ99453 314 aa16.05■□□□□ 0.16
SHMT2-235ENST00000557740 CLSTN3Q9BQT9 956 aa16.05■□□□□ 0.16
SHMT2-235ENST00000557740 TCHPQ9BT92 498 aa16.05■□□□□ 0.16
SHMT2-235ENST00000557740 TARS2Q9BW92 718 aaKnown RBP16.05■□□□□ 0.16
SHMT2-235ENST00000557740 SLC38A7Q9NVC3 462 aa16.05■□□□□ 0.16
SHMT2-235ENST00000557740 SMC3Q9UQE7 1217 aa16.05■□□□□ 0.16
SHMT2-235ENST00000557740 C2orf16Q68DN1 1984 aa16.05■□□□□ 0.16
SHMT2-235ENST00000557740 MYO10Q9HD67 2058 aa16.04■□□□□ 0.16
SHMT2-235ENST00000557740 SMIM28A0A1B0GU29 152 aa16.04■□□□□ 0.16
SHMT2-235ENST00000557740 XYLBO75191 536 aa16.04■□□□□ 0.16
SHMT2-235ENST00000557740 C8AP07357 584 aa16.04■□□□□ 0.16
SHMT2-235ENST00000557740 MCF2P10911 925 aa16.04■□□□□ 0.16
SHMT2-235ENST00000557740 FGFR3P22607 806 aa16.04■□□□□ 0.16
SHMT2-235ENST00000557740 MCM2P49736 904 aa16.04■□□□□ 0.16
SHMT2-235ENST00000557740 CLCNKBP51801 687 aa16.04■□□□□ 0.16
SHMT2-235ENST00000557740 SMTNP53814 917 aa16.04■□□□□ 0.16
SHMT2-235ENST00000557740 RAD51AP2Q09MP3 1159 aa16.04■□□□□ 0.16
SHMT2-235ENST00000557740 HYIQ5T013 277 aa16.04■□□□□ 0.16
SHMT2-235ENST00000557740 ARL6IP4Q66PJ3 421 aaKnown RBP16.04■□□□□ 0.16
SHMT2-235ENST00000557740 MPZL3Q6UWV2 235 aa16.04■□□□□ 0.16
SHMT2-235ENST00000557740 TAS1R3Q7RTX0 852 aa16.04■□□□□ 0.16
SHMT2-235ENST00000557740 SIX5Q8N196 739 aa16.04■□□□□ 0.16
SHMT2-235ENST00000557740 KCTD17Q8N5Z5 321 aa16.04■□□□□ 0.16
SHMT2-235ENST00000557740 RSAD2Q8WXG1 361 aa16.04■□□□□ 0.16
SHMT2-235ENST00000557740 SNX27Q96L92 541 aa16.04■□□□□ 0.16
SHMT2-235ENST00000557740 GOLGA2P5Q9HBQ8 144 aa16.04■□□□□ 0.16
SHMT2-235ENST00000557740 PTPRHQ9HD43 1115 aa16.04■□□□□ 0.16
SHMT2-235ENST00000557740 FAM86C1Q9NVL1 165 aa16.04■□□□□ 0.16
SHMT2-235ENST00000557740 ANKFY1Q9P2R3 1169 aa16.04■□□□□ 0.16
SHMT2-235ENST00000557740 SFI1A8K8P3 1242 aa16.03■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms