RNA–Protein interactions for RNA: ENST00000557455.1

CCDC88C-213, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 811 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-213ENST00000557455 U2AF2P26368 475 aaKnown RBP eCLIP12.19□□□□□ -0.46
CCDC88C-213ENST00000557455 PTGDRQ13258 359 aa12.19□□□□□ -0.46
CCDC88C-213ENST00000557455 NAB2Q15742 525 aa12.19□□□□□ -0.46
CCDC88C-213ENST00000557455 PSMD5Q16401 504 aa12.19□□□□□ -0.46
CCDC88C-213ENST00000557455 EEF1DP3Q658K8 133 aa12.19□□□□□ -0.46
CCDC88C-213ENST00000557455 PDXDC1Q6P996 788 aa12.19□□□□□ -0.46
CCDC88C-213ENST00000557455 GET4Q7L5D6 327 aaPredicted RBP12.19□□□□□ -0.46
CCDC88C-213ENST00000557455 APBB1IPQ7Z5R6 666 aaPredicted RBP12.19□□□□□ -0.46
CCDC88C-213ENST00000557455 SIX5Q8N196 739 aa12.19□□□□□ -0.46
CCDC88C-213ENST00000557455 LNX1Q8TBB1 728 aaPredicted RBP12.19□□□□□ -0.46
CCDC88C-213ENST00000557455 RSAD2Q8WXG1 361 aa12.19□□□□□ -0.46
CCDC88C-213ENST00000557455 PIK3R5Q8WYR1 880 aa12.19□□□□□ -0.46
CCDC88C-213ENST00000557455 NXPE3Q969Y0 559 aa12.19□□□□□ -0.46
CCDC88C-213ENST00000557455 CLSTN3Q9BQT9 956 aa12.19□□□□□ -0.46
CCDC88C-213ENST00000557455 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP12.19□□□□□ -0.46
CCDC88C-213ENST00000557455 MYH15Q9Y2K3 1946 aa12.18□□□□□ -0.46
CCDC88C-213ENST00000557455 CCDC169A6NNP5 214 aa12.18□□□□□ -0.46
CCDC88C-213ENST00000557455 E9PMD0 336 aa12.18□□□□□ -0.46
CCDC88C-213ENST00000557455 LAD1O00515 517 aa12.18□□□□□ -0.46
CCDC88C-213ENST00000557455 ST18O60284 1047 aa12.18□□□□□ -0.46
CCDC88C-213ENST00000557455 GFRA3O60609 400 aa12.18□□□□□ -0.46
CCDC88C-213ENST00000557455 CFHP08603 1231 aa12.18□□□□□ -0.46
CCDC88C-213ENST00000557455 NPR3P17342 541 aa12.18□□□□□ -0.46
CCDC88C-213ENST00000557455 AOC1P19801 751 aa12.18□□□□□ -0.46
CCDC88C-213ENST00000557455 TOB1P50616 345 aaPredicted RBP12.18□□□□□ -0.46
CCDC88C-213ENST00000557455 GLRA4Q5JXX5 417 aa12.18□□□□□ -0.46
CCDC88C-213ENST00000557455 NT5DC1Q5TFE4 455 aa12.18□□□□□ -0.46
CCDC88C-213ENST00000557455 LIN9Q5TKA1 542 aa12.18□□□□□ -0.46
CCDC88C-213ENST00000557455 KRT79Q5XKE5 535 aa12.18□□□□□ -0.46
CCDC88C-213ENST00000557455 CWF19L1Q69YN2 538 aaKnown RBP12.18□□□□□ -0.46
CCDC88C-213ENST00000557455 SLC44A3Q8N4M1 653 aa12.18□□□□□ -0.46
CCDC88C-213ENST00000557455 IGSF22Q8N9C0 903 aa12.18□□□□□ -0.46
CCDC88C-213ENST00000557455 KIF2CQ99661 725 aa12.18□□□□□ -0.46
CCDC88C-213ENST00000557455 WNT16Q9UBV4 365 aa12.18□□□□□ -0.46
CCDC88C-213ENST00000557455 FBXW11Q9UKB1 542 aa12.18□□□□□ -0.46
CCDC88C-213ENST00000557455 DNM3Q9UQ16 869 aa12.18□□□□□ -0.46
CCDC88C-213ENST00000557455 PCDHB6Q9Y5E3 794 aa12.18□□□□□ -0.46
CCDC88C-213ENST00000557455 PHLPP2Q6ZVD8 1323 aa12.17□□□□□ -0.46
CCDC88C-213ENST00000557455 STK25O00506 426 aa12.17□□□□□ -0.46
CCDC88C-213ENST00000557455 B3GAT3O94766 335 aa12.17□□□□□ -0.46
CCDC88C-213ENST00000557455 C8AP07357 584 aa12.17□□□□□ -0.46
CCDC88C-213ENST00000557455 HNRNPA1P09651 372 aaKnown RBP eCLIP12.17□□□□□ -0.46
CCDC88C-213ENST00000557455 LAMP2P13473 410 aa12.17□□□□□ -0.46
CCDC88C-213ENST00000557455 RFX1P22670 979 aa12.17□□□□□ -0.46
CCDC88C-213ENST00000557455 FSHRP23945 695 aa12.17□□□□□ -0.46
CCDC88C-213ENST00000557455 NPTX2P47972 431 aa12.17□□□□□ -0.46
CCDC88C-213ENST00000557455 CLCNKBP51801 687 aa12.17□□□□□ -0.46
CCDC88C-213ENST00000557455 YARSP54577 528 aaKnown RBP12.17□□□□□ -0.46
CCDC88C-213ENST00000557455 PEX3P56589 373 aa12.17□□□□□ -0.46
CCDC88C-213ENST00000557455 PPM1LQ5SGD2 360 aa12.17□□□□□ -0.46
CCDC88C-213ENST00000557455 DCLRE1AQ6PJP8 1040 aa12.17□□□□□ -0.46
CCDC88C-213ENST00000557455 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.17□□□□□ -0.46
CCDC88C-213ENST00000557455 UROC1Q96N76 676 aa12.17□□□□□ -0.46
CCDC88C-213ENST00000557455 PPP1R10Q96QC0 940 aaKnown RBP12.17□□□□□ -0.46
CCDC88C-213ENST00000557455 RTP3Q9BQQ7 232 aa12.17□□□□□ -0.46
CCDC88C-213ENST00000557455 TNFSF13BQ9Y275 285 aa12.17□□□□□ -0.46
CCDC88C-213ENST00000557455 ZFHX2Q9C0A1 2572 aaPredicted RBP12.17□□□□□ -0.46
CCDC88C-213ENST00000557455 PP2D1A8MPX8 630 aa12.16□□□□□ -0.46
CCDC88C-213ENST00000557455 PROB1E7EW31 1015 aa12.16□□□□□ -0.46
CCDC88C-213ENST00000557455 TMEM189-UBE2V1I3L0A0 370 aa12.16□□□□□ -0.46
CCDC88C-213ENST00000557455 TRAPPC3O43617 180 aa12.16□□□□□ -0.46
CCDC88C-213ENST00000557455 PI15O43692 258 aa12.16□□□□□ -0.46
CCDC88C-213ENST00000557455 HIP1RO75146 1068 aa12.16□□□□□ -0.46
CCDC88C-213ENST00000557455 SRFP11831 508 aa12.16□□□□□ -0.46
CCDC88C-213ENST00000557455 FGFR3P22607 806 aa12.16□□□□□ -0.46
CCDC88C-213ENST00000557455 DMP1Q13316 513 aaPredicted RBP12.16□□□□□ -0.46
CCDC88C-213ENST00000557455 ZNF568Q3ZCX4 644 aa12.16□□□□□ -0.46
CCDC88C-213ENST00000557455 DTHD1Q6ZMT9 781 aa12.16□□□□□ -0.46
CCDC88C-213ENST00000557455 GRASPQ7Z6J2 395 aaPredicted RBP12.16□□□□□ -0.46
CCDC88C-213ENST00000557455 DRC1Q96MC2 740 aa12.16□□□□□ -0.46
CCDC88C-213ENST00000557455 ACO2Q99798 780 aaKnown RBP12.16□□□□□ -0.46
CCDC88C-213ENST00000557455 CCDC94Q9BW85 323 aaPredicted RBP12.16□□□□□ -0.46
CCDC88C-213ENST00000557455 MRPL4Q9BYD3 311 aaKnown RBP12.16□□□□□ -0.46
CCDC88C-213ENST00000557455 TMEM134Q9H6X4 195 aa12.16□□□□□ -0.46
CCDC88C-213ENST00000557455 KMT5AQ9NQR1 393 aa12.16□□□□□ -0.46
CCDC88C-213ENST00000557455 TOPORSQ9NS56 1045 aaPredicted RBP12.16□□□□□ -0.46
CCDC88C-213ENST00000557455 CA14Q9ULX7 337 aa12.16□□□□□ -0.46
CCDC88C-213ENST00000557455 POLIQ9UNA4 740 aa12.16□□□□□ -0.46
CCDC88C-213ENST00000557455 KIF3AQ9Y496 699 aa12.16□□□□□ -0.46
CCDC88C-213ENST00000557455 ZFP37Q9Y6Q3 630 aaPredicted RBP12.16□□□□□ -0.46
CCDC88C-213ENST00000557455 PDCD11Q14690 1871 aaKnown RBP12.16□□□□□ -0.46
CCDC88C-213ENST00000557455 SMIM28A0A1B0GU29 152 aa12.15□□□□□ -0.46
CCDC88C-213ENST00000557455 KRBA1A5PL33 1030 aa12.15□□□□□ -0.46
CCDC88C-213ENST00000557455 ANHXE9PGG2 379 aa12.15□□□□□ -0.46
CCDC88C-213ENST00000557455 CCL16O15467 120 aa12.15□□□□□ -0.46
CCDC88C-213ENST00000557455 ADAM12O43184 909 aa12.15□□□□□ -0.46
CCDC88C-213ENST00000557455 XYLBO75191 536 aa12.15□□□□□ -0.46
CCDC88C-213ENST00000557455 IGFBP6P24592 240 aaPredicted RBP12.15□□□□□ -0.46
CCDC88C-213ENST00000557455 CDC25AP30304 524 aa12.15□□□□□ -0.46
CCDC88C-213ENST00000557455 HOXA9P31269 272 aa12.15□□□□□ -0.46
CCDC88C-213ENST00000557455 OR1D2P34982 312 aa12.15□□□□□ -0.46
CCDC88C-213ENST00000557455 PRPHP41219 470 aa12.15□□□□□ -0.46
CCDC88C-213ENST00000557455 NBL1P41271 181 aa12.15□□□□□ -0.46
CCDC88C-213ENST00000557455 GRM5P41594 1212 aa12.15□□□□□ -0.46
CCDC88C-213ENST00000557455 OSTNP61366 133 aa12.15□□□□□ -0.46
CCDC88C-213ENST00000557455 RAB33AQ14088 237 aa12.15□□□□□ -0.46
CCDC88C-213ENST00000557455 ZRSR1Q15695 479 aaKnown RBP12.15□□□□□ -0.46
CCDC88C-213ENST00000557455 IL17AQ16552 155 aa12.15□□□□□ -0.46
CCDC88C-213ENST00000557455 UPP1Q16831 310 aa12.15□□□□□ -0.46
CCDC88C-213ENST00000557455 C8orf34Q49A92 452 aa12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms