RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 RNF149Q8NC42 400 aa13.62□□□□□ -0.23
SHMT2-229ENST00000557348 SOCS4Q8WXH5 440 aa13.62□□□□□ -0.23
SHMT2-229ENST00000557348 SHC3Q92529 594 aa13.62□□□□□ -0.23
SHMT2-229ENST00000557348 GPR88Q9GZN0 384 aa13.62□□□□□ -0.23
SHMT2-229ENST00000557348 RBAKQ9NYW8 714 aaPredicted RBP13.62□□□□□ -0.23
SHMT2-229ENST00000557348 SNX12Q9UMY4 172 aa13.62□□□□□ -0.23
SHMT2-229ENST00000557348 RRN3P2A6NIE6 340 aa13.61□□□□□ -0.23
SHMT2-229ENST00000557348 ACKR2O00590 384 aa13.61□□□□□ -0.23
SHMT2-229ENST00000557348 OGTO15294 1046 aa13.61□□□□□ -0.23
SHMT2-229ENST00000557348 SHOX2O60902 331 aaPredicted RBP13.61□□□□□ -0.23
SHMT2-229ENST00000557348 C22orf31O95567 290 aa13.61□□□□□ -0.23
SHMT2-229ENST00000557348 HSPA6P17066 643 aa13.61□□□□□ -0.23
SHMT2-229ENST00000557348 TNNI1P19237 187 aa13.61□□□□□ -0.23
SHMT2-229ENST00000557348 BPIFB4P59827 614 aa13.61□□□□□ -0.23
SHMT2-229ENST00000557348 PTENP60484 403 aa13.61□□□□□ -0.23
SHMT2-229ENST00000557348 MCL1Q07820 350 aa13.61□□□□□ -0.23
SHMT2-229ENST00000557348 MAP2K5Q13163 448 aa13.61□□□□□ -0.23
SHMT2-229ENST00000557348 TAF1CQ15572 869 aaPredicted RBP13.61□□□□□ -0.23
SHMT2-229ENST00000557348 ENOX2Q16206 610 aaKnown RBP13.61□□□□□ -0.23
SHMT2-229ENST00000557348 FAM187BQ17R55 369 aa13.61□□□□□ -0.23
SHMT2-229ENST00000557348 ARHGAP44Q17R89 818 aa13.61□□□□□ -0.23
SHMT2-229ENST00000557348 ZACNQ401N2 412 aa13.61□□□□□ -0.23
SHMT2-229ENST00000557348 CCDC70Q6NSX1 233 aa13.61□□□□□ -0.23
SHMT2-229ENST00000557348 RGMBQ6NW40 437 aa13.61□□□□□ -0.23
SHMT2-229ENST00000557348 EFCAB12Q6NXP0 572 aa13.61□□□□□ -0.23
SHMT2-229ENST00000557348 PPP1R2P3Q6NXS1 205 aa13.61□□□□□ -0.23
SHMT2-229ENST00000557348 GJB7Q6PEY0 223 aa13.61□□□□□ -0.23
SHMT2-229ENST00000557348 C15orf39Q6ZRI6 1047 aa13.61□□□□□ -0.23
SHMT2-229ENST00000557348 FAM71AQ8IYT1 594 aa13.61□□□□□ -0.23
SHMT2-229ENST00000557348 PPM1KQ8N3J5 372 aa13.61□□□□□ -0.23
SHMT2-229ENST00000557348 SLC30A5Q8TAD4 765 aa13.61□□□□□ -0.23
SHMT2-229ENST00000557348 COPS5Q92905 334 aa13.61□□□□□ -0.23
SHMT2-229ENST00000557348 SYT11Q9BT88 431 aa13.61□□□□□ -0.23
SHMT2-229ENST00000557348 TARS2Q9BW92 718 aaKnown RBP13.61□□□□□ -0.23
SHMT2-229ENST00000557348 IMPG2Q9BZV3 1241 aa13.61□□□□□ -0.23
SHMT2-229ENST00000557348 PRMT7Q9NVM4 692 aaPredicted RBP13.61□□□□□ -0.23
SHMT2-229ENST00000557348 ANKFY1Q9P2R3 1169 aa13.61□□□□□ -0.23
SHMT2-229ENST00000557348 AJAP1Q9UKB5 411 aaPredicted RBP13.61□□□□□ -0.23
SHMT2-229ENST00000557348 DUSP10Q9Y6W6 482 aa13.61□□□□□ -0.23
SHMT2-229ENST00000557348 PLXNA1Q9UIW2 1896 aa13.6□□□□□ -0.23
SHMT2-229ENST00000557348 CES2O00748 559 aa13.6□□□□□ -0.23
SHMT2-229ENST00000557348 MOCS3O95396 460 aa13.6□□□□□ -0.23
SHMT2-229ENST00000557348 ATP1A1P05023 1023 aaKnown RBP13.6□□□□□ -0.23
SHMT2-229ENST00000557348 TMEM253P0C7T8 217 aa13.6□□□□□ -0.23
SHMT2-229ENST00000557348 GZMAP12544 262 aa13.6□□□□□ -0.23
SHMT2-229ENST00000557348 TBXAS1P24557 533 aaPredicted RBP13.6□□□□□ -0.23
SHMT2-229ENST00000557348 TNFAIP2Q03169 654 aa13.6□□□□□ -0.23
SHMT2-229ENST00000557348 MORN1Q5T089 497 aa13.6□□□□□ -0.23
SHMT2-229ENST00000557348 MPZL3Q6UWV2 235 aa13.6□□□□□ -0.23
SHMT2-229ENST00000557348 TSHZ1Q6ZSZ6 1077 aa13.6□□□□□ -0.23
SHMT2-229ENST00000557348 APBB1IPQ7Z5R6 666 aaPredicted RBP13.6□□□□□ -0.23
SHMT2-229ENST00000557348 TADA2BQ86TJ2 420 aa13.6□□□□□ -0.23
SHMT2-229ENST00000557348 ZNF677Q86XU0 584 aa13.6□□□□□ -0.23
SHMT2-229ENST00000557348 RHPN2Q8IUC4 686 aa13.6□□□□□ -0.23
SHMT2-229ENST00000557348 WDR49Q8IV35 697 aa13.6□□□□□ -0.23
SHMT2-229ENST00000557348 BRSK2Q8IWQ3 736 aa13.6□□□□□ -0.23
SHMT2-229ENST00000557348 AFG1LQ8WV93 481 aa13.6□□□□□ -0.23
SHMT2-229ENST00000557348 CTNNBL1Q8WYA6 563 aaPredicted RBP13.6□□□□□ -0.23
SHMT2-229ENST00000557348 CCDC102AQ96A19 550 aa13.6□□□□□ -0.23
SHMT2-229ENST00000557348 ACO2Q99798 780 aaKnown RBP13.6□□□□□ -0.23
SHMT2-229ENST00000557348 AGPAT1Q99943 283 aa13.6□□□□□ -0.23
SHMT2-229ENST00000557348 FZD8Q9H461 694 aa13.6□□□□□ -0.23
SHMT2-229ENST00000557348 CAPN6Q9Y6Q1 641 aa13.6□□□□□ -0.23
SHMT2-229ENST00000557348 ZNFX1Q9P2E3 1918 aaKnown RBP13.6□□□□□ -0.23
SHMT2-229ENST00000557348 H3BRB1 525 aa13.59□□□□□ -0.23
SHMT2-229ENST00000557348 FOXN3O00409 490 aaPredicted RBP13.59□□□□□ -0.23
SHMT2-229ENST00000557348 DDX3XO00571 662 aaKnown RBP eCLIP13.59□□□□□ -0.231e-14■■□□□ 13.5
SHMT2-229ENST00000557348 ZEB2O60315 1214 aa13.59□□□□□ -0.23
SHMT2-229ENST00000557348 SLC10A3P09131 477 aa13.59□□□□□ -0.23
SHMT2-229ENST00000557348 INSRRP14616 1297 aa13.59□□□□□ -0.23
SHMT2-229ENST00000557348 KLRC1P26715 233 aa13.59□□□□□ -0.23
SHMT2-229ENST00000557348 ADCYAP1R1P41586 468 aa13.59□□□□□ -0.23
SHMT2-229ENST00000557348 PIK3CAP42336 1068 aa13.59□□□□□ -0.23
SHMT2-229ENST00000557348 PDE6CP51160 858 aa13.59□□□□□ -0.23
SHMT2-229ENST00000557348 NLRP11P59045 1033 aaKnown RBP13.59□□□□□ -0.23
SHMT2-229ENST00000557348 PCBP1Q15365 356 aaKnown RBP eCLIP13.59□□□□□ -0.23
SHMT2-229ENST00000557348 OLFML2BQ68BL8 750 aa13.59□□□□□ -0.23
SHMT2-229ENST00000557348 ZNF572Q7Z3I7 529 aaPredicted RBP13.59□□□□□ -0.23
SHMT2-229ENST00000557348 ARHGEF19Q8IW93 802 aa13.59□□□□□ -0.23
SHMT2-229ENST00000557348 RHOT2Q8IXI1 618 aa13.59□□□□□ -0.23
SHMT2-229ENST00000557348 METTL13Q8N6R0 699 aa13.59□□□□□ -0.23
SHMT2-229ENST00000557348 ZSWIM2Q8NEG5 633 aa13.59□□□□□ -0.23
SHMT2-229ENST00000557348 OR6J1Q8NGC5 347 aa13.59□□□□□ -0.23
SHMT2-229ENST00000557348 CAGE1Q8TC20 777 aa13.59□□□□□ -0.23
SHMT2-229ENST00000557348 TAS1R2Q8TE23 839 aa13.59□□□□□ -0.23
SHMT2-229ENST00000557348 U2AF1L4Q8WU68 220 aaKnown RBP13.59□□□□□ -0.23
SHMT2-229ENST00000557348 RFFLQ8WZ73 363 aa13.59□□□□□ -0.23
SHMT2-229ENST00000557348 TCHPQ9BT92 498 aa13.59□□□□□ -0.23
SHMT2-229ENST00000557348 TUT1Q9H6E5 874 aaKnown RBP13.59□□□□□ -0.23
SHMT2-229ENST00000557348 ZFYVE28Q9HCC9 887 aa13.59□□□□□ -0.23
SHMT2-229ENST00000557348 Q9Y3F1 56 aa13.59□□□□□ -0.23
SHMT2-229ENST00000557348 NCANO14594 1321 aa13.59□□□□□ -0.23
SHMT2-229ENST00000557348 ANKRD62A6NC57 917 aa13.59□□□□□ -0.23
SHMT2-229ENST00000557348 TRIM66O15016 1216 aa13.59□□□□□ -0.23
SHMT2-229ENST00000557348 KIF1CO43896 1103 aaKnown RBP13.59□□□□□ -0.23
SHMT2-229ENST00000557348 IL18RAPO95256 599 aa13.59□□□□□ -0.23
SHMT2-229ENST00000557348 MMP3P08254 477 aa13.59□□□□□ -0.23
SHMT2-229ENST00000557348 SRGAP2CP0DJJ0 459 aa13.59□□□□□ -0.23
SHMT2-229ENST00000557348 RGS2P41220 211 aa13.59□□□□□ -0.23
SHMT2-229ENST00000557348 PAFAH1B1P43034 410 aa13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms