RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	CCDC97	Q96F63	343 aa	Predicted RBP	5.28	□□□□□ -1.56
SYNE2-223	ENST00000557005	HEXIM2	Q96MH2	286 aa	Known RBP	5.28	□□□□□ -1.56
SYNE2-223	ENST00000557005	SH3GL2	Q99962	352 aa		5.28	□□□□□ -1.56
SYNE2-223	ENST00000557005	PI4K2A	Q9BTU6	479 aa		5.28	□□□□□ -1.56
SYNE2-223	ENST00000557005	CARD9	Q9H257	536 aa		5.28	□□□□□ -1.56
SYNE2-223	ENST00000557005	APOBEC2	Q9Y235	224 aa	Known RBP	5.28	□□□□□ -1.56
SYNE2-223	ENST00000557005	SIK3	Q9Y2K2	1263 aa		5.28	□□□□□ -1.56
SYNE2-223	ENST00000557005	ZNF711	Q9Y462	761 aa		5.28	□□□□□ -1.56
SYNE2-223	ENST00000557005	UBR1	Q8IWV7	1749 aa		5.28	□□□□□ -1.56
SYNE2-223	ENST00000557005	C5	P01031	1676 aa		5.28	□□□□□ -1.56
SYNE2-223	ENST00000557005	LMO7	Q8WWI1	1683 aa		5.28	□□□□□ -1.56
SYNE2-223	ENST00000557005	KDM3B	Q7LBC6	1761 aa		5.28	□□□□□ -1.56
SYNE2-223	ENST00000557005	FANCG	O15287	622 aa		5.28	□□□□□ -1.56
SYNE2-223	ENST00000557005	TLR3	O15455	904 aa	Known RBP	5.28	□□□□□ -1.56
SYNE2-223	ENST00000557005	DKC1	O60832	514 aa	Known RBP eCLIP	5.28	□□□□□ -1.56
SYNE2-223	ENST00000557005	RNF8	O76064	485 aa		5.28	□□□□□ -1.56
SYNE2-223	ENST00000557005	SEC24D	O94855	1032 aa	Predicted RBP	5.28	□□□□□ -1.56
SYNE2-223	ENST00000557005	TMEM191B	P0C7N4	346 aa		5.28	□□□□□ -1.56
SYNE2-223	ENST00000557005	YARS	P54577	528 aa	Known RBP	5.28	□□□□□ -1.56
SYNE2-223	ENST00000557005	BPIFB4	P59827	614 aa		5.28	□□□□□ -1.56
SYNE2-223	ENST00000557005	MAPK7	Q13164	816 aa		5.28	□□□□□ -1.56
SYNE2-223	ENST00000557005	HIC1	Q14526	733 aa		5.28	□□□□□ -1.56
SYNE2-223	ENST00000557005	C2CD6	Q53TS8	623 aa		5.28	□□□□□ -1.56
SYNE2-223	ENST00000557005	FAM182B	Q5T319	152 aa		5.28	□□□□□ -1.56
SYNE2-223	ENST00000557005	OR6B2	Q6IFH4	312 aa		5.28	□□□□□ -1.56
SYNE2-223	ENST00000557005	ARHGEF19	Q8IW93	802 aa		5.28	□□□□□ -1.56
SYNE2-223	ENST00000557005	MAP7D3	Q8IWC1	876 aa		5.28	□□□□□ -1.56
SYNE2-223	ENST00000557005	CD302	Q8IX05	232 aa		5.28	□□□□□ -1.56
SYNE2-223	ENST00000557005	SLC25A41	Q8N5S1	370 aa		5.28	□□□□□ -1.56
SYNE2-223	ENST00000557005	SNRNP27	Q8WVK2	155 aa	Known RBP	5.28	□□□□□ -1.56
SYNE2-223	ENST00000557005	PIK3R5	Q8WYR1	880 aa		5.28	□□□□□ -1.56
SYNE2-223	ENST00000557005	CDKL2	Q92772	493 aa		5.28	□□□□□ -1.56
SYNE2-223	ENST00000557005	PPWD1	Q96BP3	646 aa	Known RBP	5.28	□□□□□ -1.56
SYNE2-223	ENST00000557005	RBM41	Q96IZ5	413 aa	Known RBP	5.28	□□□□□ -1.56
SYNE2-223	ENST00000557005	ACAP3	Q96P50	834 aa		5.28	□□□□□ -1.56
SYNE2-223	ENST00000557005	SERPINB12	Q96P63	405 aa		5.28	□□□□□ -1.56
SYNE2-223	ENST00000557005	MCEE	Q96PE7	176 aa		5.28	□□□□□ -1.56
SYNE2-223	ENST00000557005	ROPN1B	Q9BZX4	212 aa	Predicted RBP	5.28	□□□□□ -1.56
SYNE2-223	ENST00000557005	ROPN1	Q9HAT0	212 aa	Predicted RBP	5.28	□□□□□ -1.56
SYNE2-223	ENST00000557005	PCMTD2	Q9NV79	361 aa		5.28	□□□□□ -1.56
SYNE2-223	ENST00000557005	KBTBD4	Q9NVX7	518 aa		5.28	□□□□□ -1.56
SYNE2-223	ENST00000557005	PCSK1N	Q9UHG2	260 aa		5.28	□□□□□ -1.56
SYNE2-223	ENST00000557005	TOPAZ1	Q8N9V7	1692 aa		5.28	□□□□□ -1.56
SYNE2-223	ENST00000557005	TECPR2	O15040	1411 aa		5.28	□□□□□ -1.56
SYNE2-223	ENST00000557005	MAGEA13P	A6NCF6	341 aa		5.28	□□□□□ -1.56
SYNE2-223	ENST00000557005	FOXO6	A8MYZ6	492 aa		5.28	□□□□□ -1.56
SYNE2-223	ENST00000557005	EPHB2	P29323	1055 aa		5.28	□□□□□ -1.56
SYNE2-223	ENST00000557005	PAPOLA	P51003	745 aa	Known RBP	5.28	□□□□□ -1.56
SYNE2-223	ENST00000557005	CCNH	P51946	323 aa	Predicted RBP	5.28	□□□□□ -1.56
SYNE2-223	ENST00000557005	ITK	Q08881	620 aa		5.28	□□□□□ -1.56
SYNE2-223	ENST00000557005	PTK7	Q13308	1070 aa		5.28	□□□□□ -1.56
SYNE2-223	ENST00000557005	MCF2L2	Q86YR7	1114 aa		5.28	□□□□□ -1.56
SYNE2-223	ENST00000557005	NUDCD3	Q8IVD9	361 aa		5.28	□□□□□ -1.56
SYNE2-223	ENST00000557005	ATL2	Q8NHH9	583 aa		5.28	□□□□□ -1.56
SYNE2-223	ENST00000557005	DTNBP1	Q96EV8	351 aa		5.28	□□□□□ -1.56
SYNE2-223	ENST00000557005	THTPA	Q9BU02	230 aa		5.28	□□□□□ -1.56
SYNE2-223	ENST00000557005	PABPC3	Q9H361	631 aa	Known RBP	5.28	□□□□□ -1.56
SYNE2-223	ENST00000557005	NXF1	Q9UBU9	619 aa	Known RBP	5.28	□□□□□ -1.56
SYNE2-223	ENST00000557005	STRIP2	Q9ULQ0	834 aa		5.28	□□□□□ -1.56
SYNE2-223	ENST00000557005	ALG6	Q9Y672	507 aa		5.28	□□□□□ -1.56
SYNE2-223	ENST00000557005	TCHH	Q07283	1943 aa		5.28	□□□□□ -1.56
SYNE2-223	ENST00000557005	NOP56	O00567	594 aa	Known RBP	5.28	□□□□□ -1.56
SYNE2-223	ENST00000557005	PJA2	O43164	708 aa		5.28	□□□□□ -1.56
SYNE2-223	ENST00000557005	EYA4	O95677	639 aa		5.28	□□□□□ -1.56
SYNE2-223	ENST00000557005	CALCA	P01258	141 aa		5.28	□□□□□ -1.56
SYNE2-223	ENST00000557005	RASA1	P20936	1047 aa		5.28	□□□□□ -1.56
SYNE2-223	ENST00000557005	CYTH1	Q15438	398 aa		5.28	□□□□□ -1.56
SYNE2-223	ENST00000557005	HIF1A	Q16665	826 aa		5.28	□□□□□ -1.56
SYNE2-223	ENST00000557005	ISLR2	Q6UXK2	745 aa		5.28	□□□□□ -1.56
SYNE2-223	ENST00000557005	C16orf86	Q6ZW13	317 aa		5.28	□□□□□ -1.56
SYNE2-223	ENST00000557005	BZW1	Q7L1Q6	419 aa	Known RBP	5.28	□□□□□ -1.56
SYNE2-223	ENST00000557005	PRUNE1	Q86TP1	453 aa		5.28	□□□□□ -1.56
SYNE2-223	ENST00000557005	CCDC125	Q86Z20	511 aa		5.28	□□□□□ -1.56
SYNE2-223	ENST00000557005	ZNF34	Q8IZ26	560 aa		5.28	□□□□□ -1.56
SYNE2-223	ENST00000557005	ARHGAP18	Q8N392	663 aa		5.28	□□□□□ -1.56
SYNE2-223	ENST00000557005	ARHGEF26	Q96DR7	871 aa		5.28	□□□□□ -1.56
SYNE2-223	ENST00000557005	NAF1	Q96HR8	494 aa	Known RBP	5.28	□□□□□ -1.56
SYNE2-223	ENST00000557005	PNMA5	Q96PV4	448 aa		5.28	□□□□□ -1.56
SYNE2-223	ENST00000557005	CSRNP1	Q96S65	589 aa		5.28	□□□□□ -1.56
SYNE2-223	ENST00000557005	SH2D3A	Q9BRG2	576 aa		5.28	□□□□□ -1.56
SYNE2-223	ENST00000557005	UNC45A	Q9H3U1	944 aa		5.28	□□□□□ -1.56
SYNE2-223	ENST00000557005	JMJD4	Q9H9V9	463 aa		5.28	□□□□□ -1.56
SYNE2-223	ENST00000557005	SLAIN2	Q9P270	581 aa		5.28	□□□□□ -1.56
SYNE2-223	ENST00000557005	PLAGL2	Q9UPG8	496 aa		5.28	□□□□□ -1.56
SYNE2-223	ENST00000557005	DCDC2C	A8MYV0	355 aa		5.27	□□□□□ -1.57
SYNE2-223	ENST00000557005	PRPSAP2	O60256	369 aa		5.27	□□□□□ -1.57
SYNE2-223	ENST00000557005	DGKI	O75912	1065 aa		5.27	□□□□□ -1.57
SYNE2-223	ENST00000557005	ZWINT	O95229	277 aa		5.27	□□□□□ -1.57
SYNE2-223	ENST00000557005	RALA	P11233	206 aa		5.27	□□□□□ -1.57
SYNE2-223	ENST00000557005	P4HA1	P13674	534 aa		5.27	□□□□□ -1.57
SYNE2-223	ENST00000557005	PSMC1	P62191	440 aa	Known RBP	5.27	□□□□□ -1.57
SYNE2-223	ENST00000557005	TFAM	Q00059	246 aa	Known RBP	5.27	□□□□□ -1.57
SYNE2-223	ENST00000557005	CHI3L2	Q15782	390 aa		5.27	□□□□□ -1.57
SYNE2-223	ENST00000557005	CYP4A22	Q5TCH4	519 aa		5.27	□□□□□ -1.57
SYNE2-223	ENST00000557005	GALNT4	Q8N4A0	578 aa		5.27	□□□□□ -1.57
SYNE2-223	ENST00000557005	CHURC1	Q8WUH1	139 aa		5.27	□□□□□ -1.57
SYNE2-223	ENST00000557005	SCG3	Q8WXD2	468 aa	Known RBP	5.27	□□□□□ -1.57
SYNE2-223	ENST00000557005	EDEM3	Q9BZQ6	932 aa		5.27	□□□□□ -1.57
SYNE2-223	ENST00000557005	POLR3F	Q9H1D9	316 aa	Predicted RBP	5.27	□□□□□ -1.57
SYNE2-223	ENST00000557005	NEUROG2	Q9H2A3	272 aa		5.27	□□□□□ -1.57

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