RNA–Protein interactions for RNA: ENST00000556726.5

CCDC88C-211, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5

Gene CCDC88C, Length 3,617 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-211ENST00000556726 IGLV3-22A0A075B6J6 115 aa12.95□□□□□ -0.34
CCDC88C-211ENST00000556726 SYNJ2BP-COX16A0A087WUM0 186 aa12.95□□□□□ -0.34
CCDC88C-211ENST00000556726 TMEM120BA0PK00 339 aa12.95□□□□□ -0.34
CCDC88C-211ENST00000556726 YDJCA8MPS7 323 aa12.95□□□□□ -0.34
CCDC88C-211ENST00000556726 RBAK-RBAKDNI3L0D1 243 aa12.95□□□□□ -0.34
CCDC88C-211ENST00000556726 CA4P22748 312 aa12.95□□□□□ -0.34
CCDC88C-211ENST00000556726 CLNS1AP54105 237 aaKnown RBP12.95□□□□□ -0.34
CCDC88C-211ENST00000556726 BASP1P80723 227 aaKnown RBP12.95□□□□□ -0.34
CCDC88C-211ENST00000556726 GPS1Q13098 491 aa12.95□□□□□ -0.34
CCDC88C-211ENST00000556726 IZUMO3Q5VZ72 239 aa12.95□□□□□ -0.34
CCDC88C-211ENST00000556726 GADL1Q6ZQY3 521 aa12.95□□□□□ -0.34
CCDC88C-211ENST00000556726 FLAD1Q8NFF5 587 aa12.95□□□□□ -0.34
CCDC88C-211ENST00000556726 SYTL5Q8TDW5 730 aaPredicted RBP12.95□□□□□ -0.34
CCDC88C-211ENST00000556726 KAT2BQ92831 832 aa12.95□□□□□ -0.34
CCDC88C-211ENST00000556726 MKNK1Q9BUB5 465 aa12.95□□□□□ -0.34
CCDC88C-211ENST00000556726 PABPC3Q9H361 631 aaKnown RBP12.95□□□□□ -0.34
CCDC88C-211ENST00000556726 LRRC4CQ9HCJ2 640 aa12.95□□□□□ -0.34
CCDC88C-211ENST00000556726 COX16Q9P0S2 106 aa12.95□□□□□ -0.34
CCDC88C-211ENST00000556726 AGO2Q9UKV8 859 aaKnown RBP12.95□□□□□ -0.34
CCDC88C-211ENST00000556726 H0Y3Z8 333 aa12.95□□□□□ -0.34
CCDC88C-211ENST00000556726 PRKCIP41743 596 aa12.95□□□□□ -0.34
CCDC88C-211ENST00000556726 PTENP60484 403 aa12.95□□□□□ -0.34
CCDC88C-211ENST00000556726 ADCY2Q08462 1091 aa12.95□□□□□ -0.34
CCDC88C-211ENST00000556726 SLMAPQ14BN4 828 aa12.95□□□□□ -0.34
CCDC88C-211ENST00000556726 KCNT1Q5JUK3 1230 aa12.95□□□□□ -0.34
CCDC88C-211ENST00000556726 CYP4A22Q5TCH4 519 aa12.95□□□□□ -0.34
CCDC88C-211ENST00000556726 DNAJC24Q6P3W2 148 aa12.95□□□□□ -0.34
CCDC88C-211ENST00000556726 PRELID2Q8N945 189 aa12.95□□□□□ -0.34
CCDC88C-211ENST00000556726 KLHL14Q9P2G3 628 aa12.95□□□□□ -0.34
CCDC88C-211ENST00000556726 UTRNP46939 3433 aa12.95□□□□□ -0.34
CCDC88C-211ENST00000556726 HLA-DRAP01903 254 aa12.95□□□□□ -0.34
CCDC88C-211ENST00000556726 IRX4P78413 519 aa12.95□□□□□ -0.34
CCDC88C-211ENST00000556726 PRKCEQ02156 737 aa12.95□□□□□ -0.34
CCDC88C-211ENST00000556726 PPP2R5DQ14738 602 aa12.95□□□□□ -0.34
CCDC88C-211ENST00000556726 SETDB1Q15047 1291 aa12.95□□□□□ -0.34
CCDC88C-211ENST00000556726 CCDC91Q7Z6B0 441 aa12.95□□□□□ -0.34
CCDC88C-211ENST00000556726 LRRC71Q8N4P6 559 aa12.95□□□□□ -0.34
CCDC88C-211ENST00000556726 CCDC33Q8N5R6 958 aa12.95□□□□□ -0.34
CCDC88C-211ENST00000556726 EPS8L1Q8TE68 723 aa12.95□□□□□ -0.34
CCDC88C-211ENST00000556726 RSAD2Q8WXG1 361 aa12.95□□□□□ -0.34
CCDC88C-211ENST00000556726 HSPH1Q92598 858 aa12.95□□□□□ -0.34
CCDC88C-211ENST00000556726 ZNF408Q9H9D4 720 aa12.95□□□□□ -0.34
CCDC88C-211ENST00000556726 SLC40A1Q9NP59 571 aa12.95□□□□□ -0.34
CCDC88C-211ENST00000556726 DCTN4Q9UJW0 460 aa12.95□□□□□ -0.34
CCDC88C-211ENST00000556726 GRIN2DO15399 1336 aa12.95□□□□□ -0.34
CCDC88C-211ENST00000556726 DPEP1P16444 411 aa12.94□□□□□ -0.34
CCDC88C-211ENST00000556726 CCND2P30279 289 aa12.94□□□□□ -0.34
CCDC88C-211ENST00000556726 DHX34Q14147 1143 aaKnown RBP12.94□□□□□ -0.34
CCDC88C-211ENST00000556726 RUNDC3BQ96NL0 473 aa12.94□□□□□ -0.34
CCDC88C-211ENST00000556726 RIT2Q99578 217 aa12.94□□□□□ -0.34
CCDC88C-211ENST00000556726 SH3GL2Q99962 352 aa12.94□□□□□ -0.34
CCDC88C-211ENST00000556726 MAK16Q9BXY0 300 aaKnown RBP12.94□□□□□ -0.34
CCDC88C-211ENST00000556726 WNT8AQ9H1J5 351 aa12.94□□□□□ -0.34
CCDC88C-211ENST00000556726 CDC42EP4Q9H3Q1 356 aaKnown RBP12.94□□□□□ -0.34
CCDC88C-211ENST00000556726 FAM187AA6NFU0 413 aa12.94□□□□□ -0.34
CCDC88C-211ENST00000556726 VIL1P09327 827 aaKnown RBP12.94□□□□□ -0.34
CCDC88C-211ENST00000556726 ZSCAN5DPP0CG00 497 aa12.94□□□□□ -0.34
CCDC88C-211ENST00000556726 BYSLQ13895 437 aaKnown RBP12.94□□□□□ -0.34
CCDC88C-211ENST00000556726 P3H1Q32P28 736 aa12.94□□□□□ -0.34
CCDC88C-211ENST00000556726 TATDN1Q6P1N9 297 aa12.94□□□□□ -0.34
CCDC88C-211ENST00000556726 PALM2Q8IXS6 379 aa12.94□□□□□ -0.34
CCDC88C-211ENST00000556726 GPD1LQ8N335 351 aa12.94□□□□□ -0.34
CCDC88C-211ENST00000556726 FBF1Q8TES7 1133 aa12.94□□□□□ -0.34
CCDC88C-211ENST00000556726 FRMPD4Q14CM0 1322 aa12.94□□□□□ -0.34
CCDC88C-211ENST00000556726 PSAPP07602 524 aa12.94□□□□□ -0.34
CCDC88C-211ENST00000556726 CREB1P16220 341 aa12.94□□□□□ -0.34
CCDC88C-211ENST00000556726 YY1P25490 414 aa12.94□□□□□ -0.34
CCDC88C-211ENST00000556726 UBAP2Q5T6F2 1119 aaKnown RBP12.94□□□□□ -0.34
CCDC88C-211ENST00000556726 NBPF12Q5TAG4 269 aaPredicted RBP12.94□□□□□ -0.34
CCDC88C-211ENST00000556726 DEFB132Q7Z7B7 95 aa12.94□□□□□ -0.34
CCDC88C-211ENST00000556726 ZBED8Q8IZ13 594 aa12.94□□□□□ -0.34
CCDC88C-211ENST00000556726 DAW1Q8N136 415 aa12.94□□□□□ -0.34
CCDC88C-211ENST00000556726 PPP1R14CQ8TAE6 165 aa12.94□□□□□ -0.34
CCDC88C-211ENST00000556726 CNOT10Q9H9A5 744 aaKnown RBP12.94□□□□□ -0.34
CCDC88C-211ENST00000556726 IRS2Q9Y4H2 1338 aa12.94□□□□□ -0.34
CCDC88C-211ENST00000556726 UBR2Q8IWV8 1755 aa12.94□□□□□ -0.34
CCDC88C-211ENST00000556726 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP12.93□□□□□ -0.34
CCDC88C-211ENST00000556726 GRAP2O75791 330 aa12.93□□□□□ -0.34
CCDC88C-211ENST00000556726 SUN1O94901 812 aa12.93□□□□□ -0.34
CCDC88C-211ENST00000556726 CIITAP33076 1130 aa12.93□□□□□ -0.34
CCDC88C-211ENST00000556726 CCDC6Q16204 474 aa12.93□□□□□ -0.34
CCDC88C-211ENST00000556726 DCAF12L1Q5VU92 463 aa12.93□□□□□ -0.34
CCDC88C-211ENST00000556726 CHADLQ6NUI6 762 aa12.93□□□□□ -0.34
CCDC88C-211ENST00000556726 HES6Q96HZ4 224 aa12.93□□□□□ -0.34
CCDC88C-211ENST00000556726 KREMEN1Q96MU8 473 aa12.93□□□□□ -0.34
CCDC88C-211ENST00000556726 MCEEQ96PE7 176 aa12.93□□□□□ -0.34
CCDC88C-211ENST00000556726 TGS1Q96RS0 853 aaKnown RBP12.93□□□□□ -0.34
CCDC88C-211ENST00000556726 SAE1Q9UBE0 346 aaPredicted RBP12.93□□□□□ -0.34
CCDC88C-211ENST00000556726 ICAM1P05362 532 aa12.93□□□□□ -0.34
CCDC88C-211ENST00000556726 ATP5DP30049 168 aa12.93□□□□□ -0.34
CCDC88C-211ENST00000556726 YWHAGP61981 247 aaKnown RBP eCLIP12.93□□□□□ -0.34
CCDC88C-211ENST00000556726 MXRA7P84157 204 aa12.93□□□□□ -0.34
CCDC88C-211ENST00000556726 KRT76Q01546 638 aa12.93□□□□□ -0.34
CCDC88C-211ENST00000556726 MKRN3Q13064 507 aaKnown RBP12.93□□□□□ -0.34
CCDC88C-211ENST00000556726 PPP2R5CQ13362 524 aa12.93□□□□□ -0.34
CCDC88C-211ENST00000556726 TNFAIP1Q13829 316 aa12.93□□□□□ -0.34
CCDC88C-211ENST00000556726 LRIG3Q6UXM1 1119 aa12.93□□□□□ -0.34
CCDC88C-211ENST00000556726 PIK3R5Q8WYR1 880 aa12.93□□□□□ -0.34
CCDC88C-211ENST00000556726 APOL6Q9BWW8 343 aa12.93□□□□□ -0.34
CCDC88C-211ENST00000556726 ATP6V0A4Q9HBG4 840 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms