RNA–Protein interactions for RNA: ENST00000556353.1

PRPF39-209, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 687 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-209ENST00000556353 CPEB3Q8NE35 698 aaKnown RBP6.94□□□□□ -1.3
PRPF39-209ENST00000556353 FBXO18Q8NFZ0 1043 aa6.94□□□□□ -1.3
PRPF39-209ENST00000556353 PHACTR3Q96KR7 559 aa6.94□□□□□ -1.3
PRPF39-209ENST00000556353 ADI1Q9BV57 179 aa6.94□□□□□ -1.3
PRPF39-209ENST00000556353 WDR11Q9BZH6 1224 aa6.94□□□□□ -1.3
PRPF39-209ENST00000556353 TMX1Q9H3N1 280 aa6.94□□□□□ -1.3
PRPF39-209ENST00000556353 DMRT3Q9NQL9 472 aa6.94□□□□□ -1.3
PRPF39-209ENST00000556353 CCM2LQ9NUG4 571 aaPredicted RBP6.94□□□□□ -1.3
PRPF39-209ENST00000556353 USP15Q9Y4E8 981 aaPredicted RBP6.94□□□□□ -1.3
PRPF39-209ENST00000556353 COL4A3Q01955 1670 aa6.93□□□□□ -1.3
PRPF39-209ENST00000556353 DRGXA6NNA5 263 aa6.93□□□□□ -1.3
PRPF39-209ENST00000556353 IL2RBP14784 551 aa6.93□□□□□ -1.3
PRPF39-209ENST00000556353 PROZP22891 400 aa6.93□□□□□ -1.3
PRPF39-209ENST00000556353 SREBF1P36956 1147 aa6.93□□□□□ -1.3
PRPF39-209ENST00000556353 ZEB1P37275 1124 aaPredicted RBP6.93□□□□□ -1.3
PRPF39-209ENST00000556353 GPR3P46089 330 aa6.93□□□□□ -1.3
PRPF39-209ENST00000556353 USP14P54578 494 aa6.93□□□□□ -1.3
PRPF39-209ENST00000556353 MXRA7P84157 204 aa6.93□□□□□ -1.3
PRPF39-209ENST00000556353 NOMO1Q15155 1222 aa6.93□□□□□ -1.3
PRPF39-209ENST00000556353 HECTD2Q5U5R9 776 aa6.93□□□□□ -1.3
PRPF39-209ENST00000556353 LCORLQ8N3X6 602 aa6.93□□□□□ -1.3
PRPF39-209ENST00000556353 ATL2Q8NHH9 583 aa6.93□□□□□ -1.3
PRPF39-209ENST00000556353 SENP6Q9GZR1 1112 aaPredicted RBP6.93□□□□□ -1.3
PRPF39-209ENST00000556353 TOR3AQ9H497 397 aa6.93□□□□□ -1.3
PRPF39-209ENST00000556353 LANCL2Q9NS86 450 aa6.93□□□□□ -1.3
PRPF39-209ENST00000556353 MOCS1Q9NZB8 636 aa6.93□□□□□ -1.3
PRPF39-209ENST00000556353 ATP11BQ9Y2G3 1177 aa6.93□□□□□ -1.3
PRPF39-209ENST00000556353 FPGT-TNNI3KV9GXZ4 949 aa6.93□□□□□ -1.3
PRPF39-209ENST00000556353 ATRNL1Q5VV63 1379 aa6.93□□□□□ -1.3
PRPF39-209ENST00000556353 ENDOD1O94919 500 aa6.92□□□□□ -1.3
PRPF39-209ENST00000556353 DDX6P26196 483 aaKnown RBP eCLIP6.92□□□□□ -1.3
PRPF39-209ENST00000556353 MCAMP43121 646 aa6.92□□□□□ -1.3
PRPF39-209ENST00000556353 RAP2BP61225 183 aa6.92□□□□□ -1.3
PRPF39-209ENST00000556353 GUCY1B3Q02153 619 aa6.92□□□□□ -1.3
PRPF39-209ENST00000556353 PPP3CAQ08209 521 aa6.92□□□□□ -1.3
PRPF39-209ENST00000556353 AFMIDQ63HM1 303 aa6.92□□□□□ -1.3
PRPF39-209ENST00000556353 METRNLQ641Q3 311 aa6.92□□□□□ -1.3
PRPF39-209ENST00000556353 SUPT20HQ8NEM7 779 aa6.92□□□□□ -1.3
PRPF39-209ENST00000556353 CRAMP1Q96RY5 1269 aa6.92□□□□□ -1.3
PRPF39-209ENST00000556353 DKK2Q9UBU2 259 aa6.92□□□□□ -1.3
PRPF39-209ENST00000556353 WASHC2AQ641Q2 1341 aa6.92□□□□□ -1.3
PRPF39-209ENST00000556353 UNC119BA6NIH7 251 aa6.91□□□□□ -1.3
PRPF39-209ENST00000556353 RAP2AP10114 183 aa6.91□□□□□ -1.3
PRPF39-209ENST00000556353 OSMP13725 252 aa6.91□□□□□ -1.3
PRPF39-209ENST00000556353 GSPT1P15170 499 aaKnown RBP6.91□□□□□ -1.3
PRPF39-209ENST00000556353 BMP5P22003 454 aa6.91□□□□□ -1.3
PRPF39-209ENST00000556353 AVPR1BP47901 424 aa6.91□□□□□ -1.3
PRPF39-209ENST00000556353 AGAP9Q5VTM2 703 aa6.91□□□□□ -1.3
PRPF39-209ENST00000556353 Q6YL49 198 aa6.91□□□□□ -1.3
PRPF39-209ENST00000556353 RHOT2Q8IXI1 618 aa6.91□□□□□ -1.3
PRPF39-209ENST00000556353 DRC7Q8IY82 874 aa6.91□□□□□ -1.3
PRPF39-209ENST00000556353 BEND2Q8NDZ0 799 aa6.91□□□□□ -1.3
PRPF39-209ENST00000556353 GPR150Q8NGU9 434 aa6.91□□□□□ -1.3
PRPF39-209ENST00000556353 COG1Q8WTW3 980 aa6.91□□□□□ -1.3
PRPF39-209ENST00000556353 HOXB13Q92826 284 aaPredicted RBP6.91□□□□□ -1.3
PRPF39-209ENST00000556353 NEU1Q99519 415 aa6.91□□□□□ -1.3
PRPF39-209ENST00000556353 MRI1Q9BV20 369 aa6.91□□□□□ -1.3
PRPF39-209ENST00000556353 REXO4Q9GZR2 422 aaKnown RBP6.91□□□□□ -1.3
PRPF39-209ENST00000556353 PCDHGA2Q9Y5H1 932 aa6.91□□□□□ -1.3
PRPF39-209ENST00000556353 PNPLA7Q6ZV29 1317 aa6.91□□□□□ -1.3
PRPF39-209ENST00000556353 SMARCA4P51532 1647 aa6.9□□□□□ -1.3
PRPF39-209ENST00000556353 ATP5JP18859 108 aa6.9□□□□□ -1.3
PRPF39-209ENST00000556353 MTNR1BP49286 362 aa6.9□□□□□ -1.3
PRPF39-209ENST00000556353 ARMC6Q6NXE6 501 aa6.9□□□□□ -1.3
PRPF39-209ENST00000556353 CMTR2Q8IYT2 770 aaKnown RBP6.9□□□□□ -1.3
PRPF39-209ENST00000556353 OR56A1Q8NGH5 318 aa6.9□□□□□ -1.3
PRPF39-209ENST00000556353 STON2Q8WXE9 905 aa6.9□□□□□ -1.3
PRPF39-209ENST00000556353 LDAHQ9H6V9 325 aa6.9□□□□□ -1.3
PRPF39-209ENST00000556353 TMEM140Q9NV12 185 aa6.9□□□□□ -1.3
PRPF39-209ENST00000556353 MAP3K2Q9Y2U5 619 aa6.9□□□□□ -1.3
PRPF39-209ENST00000556353 MARCH11A6NNE9 402 aa6.89□□□□□ -1.31
PRPF39-209ENST00000556353 WNT10BO00744 389 aa6.89□□□□□ -1.31
PRPF39-209ENST00000556353 LMNAP02545 664 aaKnown RBP6.89□□□□□ -1.31
PRPF39-209ENST00000556353 GUCY1A2P33402 732 aa6.89□□□□□ -1.31
PRPF39-209ENST00000556353 ERVK-21P61565 698 aa6.89□□□□□ -1.31
PRPF39-209ENST00000556353 MGAT2Q10469 447 aa6.89□□□□□ -1.31
PRPF39-209ENST00000556353 RESTQ13127 1097 aa6.89□□□□□ -1.31
PRPF39-209ENST00000556353 TSHZ3Q63HK5 1081 aa6.89□□□□□ -1.31
PRPF39-209ENST00000556353 MED25Q71SY5 747 aa6.89□□□□□ -1.31
PRPF39-209ENST00000556353 AMOTL1Q8IY63 956 aa6.89□□□□□ -1.31
PRPF39-209ENST00000556353 CASKIN2Q8WXE0 1202 aa6.89□□□□□ -1.31
PRPF39-209ENST00000556353 ADAM2Q99965 735 aa6.89□□□□□ -1.31
PRPF39-209ENST00000556353 AJAP1Q9UKB5 411 aaPredicted RBP6.89□□□□□ -1.31
PRPF39-209ENST00000556353 GPR45Q9Y5Y3 372 aa6.89□□□□□ -1.31
PRPF39-209ENST00000556353 FAM171A2A8MVW0 826 aa6.88□□□□□ -1.31
PRPF39-209ENST00000556353 K7ESF4 209 aa6.88□□□□□ -1.31
PRPF39-209ENST00000556353 TEX33O43247 280 aa6.88□□□□□ -1.31
PRPF39-209ENST00000556353 POMCP01189 267 aa6.88□□□□□ -1.31
PRPF39-209ENST00000556353 CFIP05156 583 aa6.88□□□□□ -1.31
PRPF39-209ENST00000556353 ADRA1BP35368 520 aa6.88□□□□□ -1.31
PRPF39-209ENST00000556353 ALDH1A3P47895 512 aa6.88□□□□□ -1.31
PRPF39-209ENST00000556353 SPDYE7PQ495Y7 208 aa6.88□□□□□ -1.31
PRPF39-209ENST00000556353 EGFLAMQ63HQ2 1017 aa6.88□□□□□ -1.31
PRPF39-209ENST00000556353 OTUD7BQ6GQQ9 843 aa6.88□□□□□ -1.31
PRPF39-209ENST00000556353 DDX55Q8NHQ9 600 aaKnown RBP eCLIP6.88□□□□□ -1.31
PRPF39-209ENST00000556353 CYFIP2Q96F07 1278 aa6.88□□□□□ -1.31
PRPF39-209ENST00000556353 FUBP3Q96I24 572 aaKnown RBP eCLIP6.88□□□□□ -1.31
PRPF39-209ENST00000556353 KLHL11Q9NVR0 708 aa6.88□□□□□ -1.31
PRPF39-209ENST00000556353 RNF181Q9P0P0 153 aa6.88□□□□□ -1.31
PRPF39-209ENST00000556353 MCM8Q9UJA3 840 aa6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms