RNA–Protein interactions for RNA: ENST00000550280.1

SMARCD1-208, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1, humanhuman

TSL 2

Gene SMARCD1, Length 567 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD1-208ENST00000550280 CCL16O15467 120 aa12.8□□□□□ -0.36
SMARCD1-208ENST00000550280 NR1I2O75469 434 aa12.8□□□□□ -0.36
SMARCD1-208ENST00000550280 C8AP07357 584 aa12.8□□□□□ -0.36
SMARCD1-208ENST00000550280 XRCC6P12956 609 aaKnown RBP eCLIP12.8□□□□□ -0.36
SMARCD1-208ENST00000550280 FSHRP23945 695 aa12.8□□□□□ -0.36
SMARCD1-208ENST00000550280 NCBP1Q09161 790 aaKnown RBP12.8□□□□□ -0.36
SMARCD1-208ENST00000550280 ECM1Q16610 540 aa12.8□□□□□ -0.36
SMARCD1-208ENST00000550280 DCLRE1AQ6PJP8 1040 aa12.8□□□□□ -0.36
SMARCD1-208ENST00000550280 C3orf58Q8NDZ4 430 aa12.8□□□□□ -0.36
SMARCD1-208ENST00000550280 PJA1Q8NG27 643 aa12.8□□□□□ -0.36
SMARCD1-208ENST00000550280 FGF13Q92913 245 aa12.8□□□□□ -0.36
SMARCD1-208ENST00000550280 PRIMPOLQ96LW4 560 aa12.8□□□□□ -0.36
SMARCD1-208ENST00000550280 DDX23Q9BUQ8 820 aaKnown RBP12.8□□□□□ -0.36
SMARCD1-208ENST00000550280 KIFC3Q9BVG8 833 aa12.8□□□□□ -0.36
SMARCD1-208ENST00000550280 PRMT7Q9NVM4 692 aaPredicted RBP12.8□□□□□ -0.36
SMARCD1-208ENST00000550280 CDH7Q9ULB5 785 aa12.8□□□□□ -0.36
SMARCD1-208ENST00000550280 SIT1Q9Y3P8 196 aa12.8□□□□□ -0.36
SMARCD1-208ENST00000550280 OTOGLQ3ZCN5 2332 aa12.8□□□□□ -0.36
SMARCD1-208ENST00000550280 LMNAP02545 664 aaKnown RBP12.79□□□□□ -0.36
SMARCD1-208ENST00000550280 FGFR3P22607 806 aa12.79□□□□□ -0.36
SMARCD1-208ENST00000550280 GLRA4Q5JXX5 417 aa12.79□□□□□ -0.36
SMARCD1-208ENST00000550280 NT5DC1Q5TFE4 455 aa12.79□□□□□ -0.36
SMARCD1-208ENST00000550280 ELMSAN1Q6PJG2 1045 aa12.79□□□□□ -0.36
SMARCD1-208ENST00000550280 ERMP1Q7Z2K6 904 aa12.79□□□□□ -0.36
SMARCD1-208ENST00000550280 CEP57Q86XR8 500 aa12.79□□□□□ -0.36
SMARCD1-208ENST00000550280 C1orf210Q8IVY1 113 aa12.79□□□□□ -0.36
SMARCD1-208ENST00000550280 HACE1Q8IYU2 909 aa12.79□□□□□ -0.36
SMARCD1-208ENST00000550280 DCLK2Q8N568 766 aa12.79□□□□□ -0.36
SMARCD1-208ENST00000550280 WASF1Q92558 559 aa12.79□□□□□ -0.36
SMARCD1-208ENST00000550280 PPP1R10Q96QC0 940 aaKnown RBP12.79□□□□□ -0.36
SMARCD1-208ENST00000550280 GOLGA2P5Q9HBQ8 144 aa12.79□□□□□ -0.36
SMARCD1-208ENST00000550280 TUFT1Q9NNX1 390 aa12.79□□□□□ -0.36
SMARCD1-208ENST00000550280 DNMT3BQ9UBC3 853 aaKnown RBP12.79□□□□□ -0.36
SMARCD1-208ENST00000550280 MED19A0JLT2 244 aaPredicted RBP12.78□□□□□ -0.36
SMARCD1-208ENST00000550280 ACKR2O00590 384 aa12.78□□□□□ -0.36
SMARCD1-208ENST00000550280 N4BP3O15049 544 aa12.78□□□□□ -0.36
SMARCD1-208ENST00000550280 MEFVO15553 781 aaPredicted RBP12.78□□□□□ -0.36
SMARCD1-208ENST00000550280 PRKCBP05771 671 aa12.78□□□□□ -0.36
SMARCD1-208ENST00000550280 THP07101 528 aa12.78□□□□□ -0.36
SMARCD1-208ENST00000550280 HNRNPA1P09651 372 aaKnown RBP eCLIP12.78□□□□□ -0.36
SMARCD1-208ENST00000550280 CYP11B2P19099 503 aa12.78□□□□□ -0.36
SMARCD1-208ENST00000550280 ATP2B1P20020 1258 aa12.78□□□□□ -0.36
SMARCD1-208ENST00000550280 HOXA9P31269 272 aa12.78□□□□□ -0.36
SMARCD1-208ENST00000550280 MCM7P33993 719 aa12.78□□□□□ -0.36
SMARCD1-208ENST00000550280 OR1D2P34982 312 aa12.78□□□□□ -0.36
SMARCD1-208ENST00000550280 CREMQ03060 361 aa12.78□□□□□ -0.36
SMARCD1-208ENST00000550280 SOX4Q06945 474 aaPredicted RBP12.78□□□□□ -0.36
SMARCD1-208ENST00000550280 SNW1Q13573 536 aaKnown RBP12.78□□□□□ -0.36
SMARCD1-208ENST00000550280 RAB33AQ14088 237 aa12.78□□□□□ -0.36
SMARCD1-208ENST00000550280 SLC5A9Q2M3M2 681 aa12.78□□□□□ -0.36
SMARCD1-208ENST00000550280 PPM1LQ5SGD2 360 aa12.78□□□□□ -0.36
SMARCD1-208ENST00000550280 AXDND1Q5T1B0 1012 aaPredicted RBP12.78□□□□□ -0.36
SMARCD1-208ENST00000550280 NPAS3Q8IXF0 933 aa12.78□□□□□ -0.36
SMARCD1-208ENST00000550280 KIAA2013Q8IYS2 634 aa12.78□□□□□ -0.36
SMARCD1-208ENST00000550280 CEP120Q8N960 986 aa12.78□□□□□ -0.36
SMARCD1-208ENST00000550280 SUMF1Q8NBK3 374 aa12.78□□□□□ -0.36
SMARCD1-208ENST00000550280 MCPH1Q8NEM0 835 aa12.78□□□□□ -0.36
SMARCD1-208ENST00000550280 SLC7A14Q8TBB6 771 aa12.78□□□□□ -0.36
SMARCD1-208ENST00000550280 POLR3CQ9BUI4 534 aaPredicted RBP12.78□□□□□ -0.36
SMARCD1-208ENST00000550280 PLA2G2FQ9BZM2 168 aa12.78□□□□□ -0.36
SMARCD1-208ENST00000550280 MTRRQ9UBK8 725 aa12.78□□□□□ -0.36
SMARCD1-208ENST00000550280 MYH15Q9Y2K3 1946 aa12.78□□□□□ -0.36
SMARCD1-208ENST00000550280 FANCMQ8IYD8 2048 aa12.78□□□□□ -0.36
SMARCD1-208ENST00000550280 CACNA1IQ9P0X4 2223 aa12.77□□□□□ -0.36
SMARCD1-208ENST00000550280 TMEM189-UBE2V1I3L0A0 370 aa12.77□□□□□ -0.37
SMARCD1-208ENST00000550280 I3L4J1 428 aa12.77□□□□□ -0.37
SMARCD1-208ENST00000550280 POU2F2P09086 479 aa12.77□□□□□ -0.37
SMARCD1-208ENST00000550280 CD72P21854 359 aa12.77□□□□□ -0.37
SMARCD1-208ENST00000550280 TKTP29401 623 aaKnown RBP12.77□□□□□ -0.37
SMARCD1-208ENST00000550280 BRCC3P46736 316 aa12.77□□□□□ -0.37
SMARCD1-208ENST00000550280 CLCNKBP51801 687 aa12.77□□□□□ -0.37
SMARCD1-208ENST00000550280 ANAPC15P60006 121 aa12.77□□□□□ -0.37
SMARCD1-208ENST00000550280 GUCY1B3Q02153 619 aa12.77□□□□□ -0.37
SMARCD1-208ENST00000550280 PRPF4BQ13523 1007 aaKnown RBP12.77□□□□□ -0.37
SMARCD1-208ENST00000550280 PADI6Q6TGC4 694 aa12.77□□□□□ -0.37
SMARCD1-208ENST00000550280 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.77□□□□□ -0.37
SMARCD1-208ENST00000550280 ING5Q8WYH8 240 aa12.77□□□□□ -0.37
SMARCD1-208ENST00000550280 DDX27Q96GQ7 796 aaKnown RBP12.77□□□□□ -0.37
SMARCD1-208ENST00000550280 CCDC43Q96MW1 224 aaKnown RBP12.77□□□□□ -0.37
SMARCD1-208ENST00000550280 KXD1Q9BQD3 176 aa12.77□□□□□ -0.37
SMARCD1-208ENST00000550280 SEMA4AQ9H3S1 761 aa12.77□□□□□ -0.37
SMARCD1-208ENST00000550280 BRMS1Q9HCU9 246 aa12.77□□□□□ -0.37
SMARCD1-208ENST00000550280 GDAQ9Y2T3 454 aa12.77□□□□□ -0.37
SMARCD1-208ENST00000550280 ZFP37Q9Y6Q3 630 aaPredicted RBP12.77□□□□□ -0.37
SMARCD1-208ENST00000550280 KANSL1LA0AUZ9 987 aa12.76□□□□□ -0.37
SMARCD1-208ENST00000550280 LIG1P18858 919 aa12.76□□□□□ -0.37
SMARCD1-208ENST00000550280 RPA1P27694 616 aa12.76□□□□□ -0.37
SMARCD1-208ENST00000550280 NAMPTP43490 491 aa12.76□□□□□ -0.37
SMARCD1-208ENST00000550280 FZD5Q13467 585 aa12.76□□□□□ -0.37
SMARCD1-208ENST00000550280 MLF2Q15773 248 aaPredicted RBP12.76□□□□□ -0.37
SMARCD1-208ENST00000550280 MAPK6Q16659 721 aa12.76□□□□□ -0.37
SMARCD1-208ENST00000550280 UPP1Q16831 310 aa12.76□□□□□ -0.37
SMARCD1-208ENST00000550280 SLC44A4Q53GD3 710 aa12.76□□□□□ -0.37
SMARCD1-208ENST00000550280 LIN9Q5TKA1 542 aa12.76□□□□□ -0.37
SMARCD1-208ENST00000550280 TAS1R3Q7RTX0 852 aa12.76□□□□□ -0.37
SMARCD1-208ENST00000550280 ZBTB8OSQ8IWT0 167 aa12.76□□□□□ -0.37
SMARCD1-208ENST00000550280 DAW1Q8N136 415 aa12.76□□□□□ -0.37
SMARCD1-208ENST00000550280 TMEM130Q8N3G9 435 aa12.76□□□□□ -0.37
SMARCD1-208ENST00000550280 C4orf32Q8N8J7 132 aa12.76□□□□□ -0.37
SMARCD1-208ENST00000550280 KCNG4Q8TDN1 519 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms