RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 MTF2Q9Y483 593 aaPredicted RBP11.73□□□□□ -0.53
VPS29-208ENST00000550267 COL4A3BPQ9Y5P4 624 aa11.73□□□□□ -0.53
VPS29-208ENST00000550267 WDR81Q562E7 1941 aa11.72□□□□□ -0.53
VPS29-208ENST00000550267 SPTLC1O15269 473 aa11.72□□□□□ -0.53
VPS29-208ENST00000550267 PRPF3O43395 683 aaKnown RBP11.72□□□□□ -0.53
VPS29-208ENST00000550267 SRGAP2CP0DJJ0 459 aa11.72□□□□□ -0.53
VPS29-208ENST00000550267 RPL17P18621 184 aaKnown RBP11.72□□□□□ -0.53
VPS29-208ENST00000550267 MLH1P40692 756 aa11.72□□□□□ -0.53
VPS29-208ENST00000550267 SCNN1GP51170 649 aa11.72□□□□□ -0.53
VPS29-208ENST00000550267 USP11P51784 963 aa11.72□□□□□ -0.53
VPS29-208ENST00000550267 RCAN1P53805 252 aa11.72□□□□□ -0.53
VPS29-208ENST00000550267 NPEPPSP55786 919 aa11.72□□□□□ -0.53
VPS29-208ENST00000550267 DSC1Q08554 894 aa11.72□□□□□ -0.53
VPS29-208ENST00000550267 UBXN2BQ14CS0 331 aa11.72□□□□□ -0.53
VPS29-208ENST00000550267 ZNF528Q3MIS6 628 aa11.72□□□□□ -0.53
VPS29-208ENST00000550267 RNF20Q5VTR2 975 aa11.72□□□□□ -0.53
VPS29-208ENST00000550267 LILRA6Q6PI73 481 aa11.72□□□□□ -0.53
VPS29-208ENST00000550267 BICD2Q8TD16 824 aa11.72□□□□□ -0.53
VPS29-208ENST00000550267 GAD1Q99259 594 aa11.72□□□□□ -0.53
VPS29-208ENST00000550267 DDX23Q9BUQ8 820 aaKnown RBP11.72□□□□□ -0.53
VPS29-208ENST00000550267 EIF2AQ9BY44 585 aaKnown RBP11.72□□□□□ -0.53
VPS29-208ENST00000550267 BCO2Q9BYV7 579 aa11.72□□□□□ -0.53
VPS29-208ENST00000550267 GPR62Q9BZJ7 368 aa11.72□□□□□ -0.53
VPS29-208ENST00000550267 VPS54Q9P1Q0 977 aa11.72□□□□□ -0.53
VPS29-208ENST00000550267 IPPQ9Y573 584 aa11.72□□□□□ -0.53
VPS29-208ENST00000550267 FANCMQ8IYD8 2048 aa11.71□□□□□ -0.53
VPS29-208ENST00000550267 DCDC2BA2VCK2 349 aa11.71□□□□□ -0.53
VPS29-208ENST00000550267 ARL5CA6NH57 179 aa11.71□□□□□ -0.53
VPS29-208ENST00000550267 ZMYND10O75800 440 aa11.71□□□□□ -0.53
VPS29-208ENST00000550267 TDP2O95551 362 aa11.71□□□□□ -0.53
VPS29-208ENST00000550267 CD72P21854 359 aa11.71□□□□□ -0.53
VPS29-208ENST00000550267 SDHBP21912 280 aa11.71□□□□□ -0.53
VPS29-208ENST00000550267 NTHL1P78549 312 aa11.71□□□□□ -0.53
VPS29-208ENST00000550267 MLF2Q15773 248 aaPredicted RBP11.71□□□□□ -0.53
VPS29-208ENST00000550267 Q4G0T1 1027 aa11.71□□□□□ -0.53
VPS29-208ENST00000550267 SLC44A4Q53GD3 710 aa11.71□□□□□ -0.53
VPS29-208ENST00000550267 MRPL14Q6P1L8 145 aaKnown RBP11.71□□□□□ -0.53
VPS29-208ENST00000550267 FUT10Q6P4F1 479 aa11.71□□□□□ -0.53
VPS29-208ENST00000550267 SRGAP1Q7Z6B7 1085 aa11.71□□□□□ -0.53
VPS29-208ENST00000550267 GRASPQ7Z6J2 395 aaPredicted RBP11.71□□□□□ -0.53
VPS29-208ENST00000550267 GPR161Q8N6U8 529 aaKnown RBP11.71□□□□□ -0.53
VPS29-208ENST00000550267 CNNM3Q8NE01 707 aa11.71□□□□□ -0.53
VPS29-208ENST00000550267 TBCKQ8TEA7 893 aa11.71□□□□□ -0.53
VPS29-208ENST00000550267 PRPF31Q8WWY3 499 aaKnown RBP11.71□□□□□ -0.53
VPS29-208ENST00000550267 ATRIPQ8WXE1 791 aa11.71□□□□□ -0.53
VPS29-208ENST00000550267 TMEM143Q96AN5 459 aa11.71□□□□□ -0.53
VPS29-208ENST00000550267 JPH2Q9BR39 696 aaPredicted RBP11.71□□□□□ -0.53
VPS29-208ENST00000550267 COLEC11Q9BWP8 271 aa11.71□□□□□ -0.53
VPS29-208ENST00000550267 UBN1Q9NPG3 1134 aa11.71□□□□□ -0.53
VPS29-208ENST00000550267 FNIP2Q9P278 1114 aa11.71□□□□□ -0.53
VPS29-208ENST00000550267 CDV3Q9UKY7 258 aaKnown RBP11.71□□□□□ -0.53
VPS29-208ENST00000550267 CDH7Q9ULB5 785 aa11.71□□□□□ -0.53
VPS29-208ENST00000550267 SMG5Q9UPR3 1016 aaKnown RBP11.71□□□□□ -0.53
VPS29-208ENST00000550267 HES2Q9Y543 173 aa11.71□□□□□ -0.53
VPS29-208ENST00000550267 PCDHGA2Q9Y5H1 932 aa11.71□□□□□ -0.53
VPS29-208ENST00000550267 ZFP37Q9Y6Q3 630 aaPredicted RBP11.71□□□□□ -0.53
VPS29-208ENST00000550267 CCDC196A0A1B0GTZ2 297 aa11.7□□□□□ -0.54
VPS29-208ENST00000550267 FAM170BA6NMN3 283 aa11.7□□□□□ -0.54
VPS29-208ENST00000550267 ADH1CP00326 375 aa11.7□□□□□ -0.54
VPS29-208ENST00000550267 C1RP00736 705 aa11.7□□□□□ -0.54
VPS29-208ENST00000550267 CPA1P15085 419 aa11.7□□□□□ -0.54
VPS29-208ENST00000550267 TIMP2P16035 220 aa11.7□□□□□ -0.54
VPS29-208ENST00000550267 PSMC5P62195 406 aa11.7□□□□□ -0.54
VPS29-208ENST00000550267 LMNB2Q03252 620 aa11.7□□□□□ -0.54
VPS29-208ENST00000550267 PRKCQQ04759 706 aa11.7□□□□□ -0.54
VPS29-208ENST00000550267 LAMTOR4Q0VGL1 99 aa11.7□□□□□ -0.54
VPS29-208ENST00000550267 USP41Q3LFD5 358 aa11.7□□□□□ -0.54
VPS29-208ENST00000550267 TSSK4Q6SA08 328 aa11.7□□□□□ -0.54
VPS29-208ENST00000550267 PRSS55Q6UWB4 352 aaPredicted RBP11.7□□□□□ -0.54
VPS29-208ENST00000550267 LYPD8Q6UX82 237 aa11.7□□□□□ -0.54
VPS29-208ENST00000550267 ZBTB44Q8NCP5 570 aa11.7□□□□□ -0.54
VPS29-208ENST00000550267 CCDC148Q8NFR7 591 aa11.7□□□□□ -0.54
VPS29-208ENST00000550267 PSPC1Q8WXF1 523 aaKnown RBP11.7□□□□□ -0.54
VPS29-208ENST00000550267 SLC7A3Q8WY07 619 aa11.7□□□□□ -0.54
VPS29-208ENST00000550267 RABGGTAQ92696 567 aa11.7□□□□□ -0.54
VPS29-208ENST00000550267 CPB2Q96IY4 423 aa11.7□□□□□ -0.54
VPS29-208ENST00000550267 MBOAT7Q96N66 472 aa11.7□□□□□ -0.54
VPS29-208ENST00000550267 APOL6Q9BWW8 343 aa11.7□□□□□ -0.54
VPS29-208ENST00000550267 EPC1Q9H2F5 836 aa11.7□□□□□ -0.54
VPS29-208ENST00000550267 LTB4R2Q9NPC1 389 aa11.7□□□□□ -0.54
VPS29-208ENST00000550267 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP11.7□□□□□ -0.54
VPS29-208ENST00000550267 USP18Q9UMW8 372 aa11.7□□□□□ -0.54
VPS29-208ENST00000550267 EP300Q09472 2414 aaPredicted RBP11.7□□□□□ -0.54
VPS29-208ENST00000550267 PATJQ8NI35 1801 aa11.7□□□□□ -0.54
VPS29-208ENST00000550267 FRYLO94915 3013 aa11.69□□□□□ -0.54
VPS29-208ENST00000550267 PRR5-ARHGAP8B1AHC4 643 aa11.69□□□□□ -0.54
VPS29-208ENST00000550267 EML1O00423 815 aa11.69□□□□□ -0.54
VPS29-208ENST00000550267 TSPAN1O60635 241 aa11.69□□□□□ -0.54
VPS29-208ENST00000550267 LILRB5O75023 590 aa11.69□□□□□ -0.54
VPS29-208ENST00000550267 ERLIN2O94905 339 aa11.69□□□□□ -0.54
VPS29-208ENST00000550267 TGM1P22735 817 aa11.69□□□□□ -0.54
VPS29-208ENST00000550267 TARSP26639 723 aaKnown RBP11.69□□□□□ -0.54
VPS29-208ENST00000550267 ARHGAP8P85298 464 aa11.69□□□□□ -0.54
VPS29-208ENST00000550267 FGD1P98174 961 aa11.69□□□□□ -0.54
VPS29-208ENST00000550267 AKAP17AQ02040 695 aaKnown RBP11.69□□□□□ -0.54
VPS29-208ENST00000550267 ST3GAL2Q16842 350 aa11.69□□□□□ -0.54
VPS29-208ENST00000550267 MTSS1LQ765P7 747 aa11.69□□□□□ -0.54
VPS29-208ENST00000550267 RNF149Q8NC42 400 aa11.69□□□□□ -0.54
VPS29-208ENST00000550267 ITFG1Q8TB96 612 aa11.69□□□□□ -0.54
VPS29-208ENST00000550267 ETNPPLQ8TBG4 499 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms