RNA–Protein interactions for RNA: ENST00000550220.1

VTI1BP3-201, Transcript of vesicle transport through interaction with t-SNAREs 1B pseudogene 3, humanhuman

BASIC

Gene VTI1BP3, Length 636 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1BP3-201ENST00000550220 MCF2P10911 925 aa11.94□□□□□ -0.5
VTI1BP3-201ENST00000550220 PLS3P13797 630 aa11.94□□□□□ -0.5
VTI1BP3-201ENST00000550220 PDCP20941 246 aa11.94□□□□□ -0.5
VTI1BP3-201ENST00000550220 GRM5P41594 1212 aa11.94□□□□□ -0.5
VTI1BP3-201ENST00000550220 IL17AQ16552 155 aa11.94□□□□□ -0.5
VTI1BP3-201ENST00000550220 FAM171A1Q5VUB5 890 aa11.94□□□□□ -0.5
VTI1BP3-201ENST00000550220 KANK3Q6NY19 840 aa11.94□□□□□ -0.5
VTI1BP3-201ENST00000550220 LILRA6Q6PI73 481 aa11.94□□□□□ -0.5
VTI1BP3-201ENST00000550220 PDZRN4Q6ZMN7 1036 aaPredicted RBP11.94□□□□□ -0.5
VTI1BP3-201ENST00000550220 BRAPQ7Z569 592 aa11.94□□□□□ -0.5
VTI1BP3-201ENST00000550220 PALB2Q86YC2 1186 aa11.94□□□□□ -0.5
VTI1BP3-201ENST00000550220 SMG7Q92540 1137 aaKnown RBP11.94□□□□□ -0.5
VTI1BP3-201ENST00000550220 CALML4Q96GE6 196 aa11.94□□□□□ -0.5
VTI1BP3-201ENST00000550220 ACAP3Q96P50 834 aa11.94□□□□□ -0.5
VTI1BP3-201ENST00000550220 KIFC3Q9BVG8 833 aa11.94□□□□□ -0.5
VTI1BP3-201ENST00000550220 PRKD2Q9BZL6 878 aa11.94□□□□□ -0.5
VTI1BP3-201ENST00000550220 PTPRHQ9HD43 1115 aa11.94□□□□□ -0.5
VTI1BP3-201ENST00000550220 LARSQ9P2J5 1176 aaKnown RBP11.94□□□□□ -0.5
VTI1BP3-201ENST00000550220 CDH22Q9UJ99 828 aa11.94□□□□□ -0.5
VTI1BP3-201ENST00000550220 ZFP37Q9Y6Q3 630 aaPredicted RBP11.94□□□□□ -0.5
VTI1BP3-201ENST00000550220 VWA3AA6NCI4 1184 aa11.93□□□□□ -0.5
VTI1BP3-201ENST00000550220 ZMYND10O75800 440 aa11.93□□□□□ -0.5
VTI1BP3-201ENST00000550220 KIF4AO95239 1232 aa11.93□□□□□ -0.5
VTI1BP3-201ENST00000550220 HNRNPA1P09651 372 aaKnown RBP eCLIP11.93□□□□□ -0.5
VTI1BP3-201ENST00000550220 CDC25AP30304 524 aa11.93□□□□□ -0.5
VTI1BP3-201ENST00000550220 AVPR2P30518 371 aa11.93□□□□□ -0.5
VTI1BP3-201ENST00000550220 RPL9P32969 192 aaKnown RBP11.93□□□□□ -0.5
VTI1BP3-201ENST00000550220 ABCD1P33897 745 aa11.93□□□□□ -0.5
VTI1BP3-201ENST00000550220 UBA7P41226 1012 aa11.93□□□□□ -0.5
VTI1BP3-201ENST00000550220 TDGQ13569 410 aa11.93□□□□□ -0.5
VTI1BP3-201ENST00000550220 ZRSR1Q15695 479 aaKnown RBP11.93□□□□□ -0.5
VTI1BP3-201ENST00000550220 NAB2Q15742 525 aa11.93□□□□□ -0.5
VTI1BP3-201ENST00000550220 KYAT1Q16773 422 aa11.93□□□□□ -0.5
VTI1BP3-201ENST00000550220 UVSSAQ2YD98 709 aa11.93□□□□□ -0.5
VTI1BP3-201ENST00000550220 ZNF568Q3ZCX4 644 aa11.93□□□□□ -0.5
VTI1BP3-201ENST00000550220 XKR4Q5GH76 650 aa11.93□□□□□ -0.5
VTI1BP3-201ENST00000550220 LIN9Q5TKA1 542 aa11.93□□□□□ -0.5
VTI1BP3-201ENST00000550220 EEF1DP3Q658K8 133 aa11.93□□□□□ -0.5
VTI1BP3-201ENST00000550220 CEP57Q86XR8 500 aa11.93□□□□□ -0.5
VTI1BP3-201ENST00000550220 DAW1Q8N136 415 aa11.93□□□□□ -0.5
VTI1BP3-201ENST00000550220 TBC1D32Q96NH3 1257 aa11.93□□□□□ -0.5
VTI1BP3-201ENST00000550220 PPP1R10Q96QC0 940 aaKnown RBP11.93□□□□□ -0.5
VTI1BP3-201ENST00000550220 MMTAG2Q9BU76 263 aaKnown RBP11.93□□□□□ -0.5
VTI1BP3-201ENST00000550220 RUSC1Q9BVN2 902 aa11.93□□□□□ -0.5
VTI1BP3-201ENST00000550220 POLD4Q9HCU8 107 aa11.93□□□□□ -0.5
VTI1BP3-201ENST00000550220 EPS15L1Q9UBC2 864 aa11.93□□□□□ -0.5
VTI1BP3-201ENST00000550220 ZDBF2Q9HCK1 2354 aa11.92□□□□□ -0.5
VTI1BP3-201ENST00000550220 CLUHO75153 1309 aa11.92□□□□□ -0.5
VTI1BP3-201ENST00000550220 SMIM28A0A1B0GU29 152 aa11.92□□□□□ -0.5
VTI1BP3-201ENST00000550220 PP2D1A8MPX8 630 aa11.92□□□□□ -0.5
VTI1BP3-201ENST00000550220 F8W810 466 aa11.92□□□□□ -0.5
VTI1BP3-201ENST00000550220 TOM1L1O75674 476 aa11.92□□□□□ -0.5
VTI1BP3-201ENST00000550220 PLA2G4BP0C869 781 aa11.92□□□□□ -0.5
VTI1BP3-201ENST00000550220 HOXA9P31269 272 aa11.92□□□□□ -0.5
VTI1BP3-201ENST00000550220 GBP2P32456 591 aaPredicted RBP11.92□□□□□ -0.5
VTI1BP3-201ENST00000550220 LONP1P36776 959 aaKnown RBP11.92□□□□□ -0.5
VTI1BP3-201ENST00000550220 NHLH1Q02575 133 aa11.92□□□□□ -0.5
VTI1BP3-201ENST00000550220 MAPK7Q13164 816 aa11.92□□□□□ -0.5
VTI1BP3-201ENST00000550220 RAB33AQ14088 237 aa11.92□□□□□ -0.5
VTI1BP3-201ENST00000550220 PSMD5Q16401 504 aa11.92□□□□□ -0.5
VTI1BP3-201ENST00000550220 UPP1Q16831 310 aa11.92□□□□□ -0.5
VTI1BP3-201ENST00000550220 RTP2Q5QGT7 225 aa11.92□□□□□ -0.5
VTI1BP3-201ENST00000550220 MPZL3Q6UWV2 235 aa11.92□□□□□ -0.5
VTI1BP3-201ENST00000550220 ALKAL1Q6UXT8 129 aa11.92□□□□□ -0.5
VTI1BP3-201ENST00000550220 ZPBP2Q6X784 338 aa11.92□□□□□ -0.5
VTI1BP3-201ENST00000550220 ANKS3Q6ZW76 656 aa11.92□□□□□ -0.5
VTI1BP3-201ENST00000550220 LNX1Q8TBB1 728 aaPredicted RBP11.92□□□□□ -0.5
VTI1BP3-201ENST00000550220 KCNN1Q92952 543 aa11.92□□□□□ -0.5
VTI1BP3-201ENST00000550220 B3GALT6Q96L58 329 aa11.92□□□□□ -0.5
VTI1BP3-201ENST00000550220 TSPAN18Q96SJ8 248 aa11.92□□□□□ -0.5
VTI1BP3-201ENST00000550220 PAAF1Q9BRP4 392 aa11.92□□□□□ -0.5
VTI1BP3-201ENST00000550220 CDT1Q9H211 546 aa11.92□□□□□ -0.5
VTI1BP3-201ENST00000550220 KCNK12Q9HB15 430 aa11.92□□□□□ -0.5
VTI1BP3-201ENST00000550220 ODF2LQ9ULJ1 636 aa11.92□□□□□ -0.5
VTI1BP3-201ENST00000550220 USP20Q9Y2K6 914 aa11.92□□□□□ -0.5
VTI1BP3-201ENST00000550220 BACE2Q9Y5Z0 518 aa11.92□□□□□ -0.5
VTI1BP3-201ENST00000550220 ARID2Q68CP9 1835 aa11.91□□□□□ -0.5
VTI1BP3-201ENST00000550220 C5orf42Q9H799 3197 aa11.91□□□□□ -0.5
VTI1BP3-201ENST00000550220 SLC16A4O15374 487 aa11.91□□□□□ -0.5
VTI1BP3-201ENST00000550220 CLDN3O15551 220 aa11.91□□□□□ -0.5
VTI1BP3-201ENST00000550220 XYLBO75191 536 aa11.91□□□□□ -0.5
VTI1BP3-201ENST00000550220 RFPL2O75678 378 aa11.91□□□□□ -0.5
VTI1BP3-201ENST00000550220 EDN1P05305 212 aa11.91□□□□□ -0.5
VTI1BP3-201ENST00000550220 ASGR2P07307 311 aa11.91□□□□□ -0.5
VTI1BP3-201ENST00000550220 POU2F2P09086 479 aa11.91□□□□□ -0.5
VTI1BP3-201ENST00000550220 SPATA31D3P0C874 917 aa11.91□□□□□ -0.5
VTI1BP3-201ENST00000550220 KCNE1P15382 129 aa11.91□□□□□ -0.5
VTI1BP3-201ENST00000550220 FGFR3P22607 806 aa11.91□□□□□ -0.5
VTI1BP3-201ENST00000550220 PROZP22891 400 aa11.91□□□□□ -0.5
VTI1BP3-201ENST00000550220 CLCN5P51795 746 aa11.91□□□□□ -0.5
VTI1BP3-201ENST00000550220 SLC12A3P55017 1021 aa11.91□□□□□ -0.5
VTI1BP3-201ENST00000550220 TMEM119Q4V9L6 283 aa11.91□□□□□ -0.5
VTI1BP3-201ENST00000550220 PPM1LQ5SGD2 360 aa11.91□□□□□ -0.5
VTI1BP3-201ENST00000550220 PRSS55Q6UWB4 352 aaPredicted RBP11.91□□□□□ -0.5
VTI1BP3-201ENST00000550220 SPATA31D4Q6ZUB0 917 aa11.91□□□□□ -0.5
VTI1BP3-201ENST00000550220 KCNK18Q7Z418 384 aa11.91□□□□□ -0.5
VTI1BP3-201ENST00000550220 TMEM161BQ8NDZ6 487 aa11.91□□□□□ -0.5
VTI1BP3-201ENST00000550220 HASPINQ8TF76 798 aa11.91□□□□□ -0.5
VTI1BP3-201ENST00000550220 RABGGTAQ92696 567 aa11.91□□□□□ -0.5
VTI1BP3-201ENST00000550220 ZNF707Q96C28 371 aaPredicted RBP11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms