RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 INO80B-WBP1J3KQ70 363 aa11.92□□□□□ -0.5
CUX1-212ENST00000547394 AGPSO00116 658 aa11.92□□□□□ -0.5
CUX1-212ENST00000547394 PGRMC1O00264 195 aaKnown RBP11.92□□□□□ -0.5
CUX1-212ENST00000547394 DDX3YO15523 660 aaKnown RBP11.92□□□□□ -0.5
CUX1-212ENST00000547394 TTI1O43156 1089 aa11.92□□□□□ -0.5
CUX1-212ENST00000547394 ATP8B1O43520 1251 aa11.92□□□□□ -0.5
CUX1-212ENST00000547394 CCDC172P0C7W6 258 aa11.92□□□□□ -0.5
CUX1-212ENST00000547394 COMTP21964 271 aa11.92□□□□□ -0.5
CUX1-212ENST00000547394 PDE6CP51160 858 aa11.92□□□□□ -0.5
CUX1-212ENST00000547394 GPC3P51654 580 aa11.92□□□□□ -0.5
CUX1-212ENST00000547394 GABPB1Q06547 395 aaPredicted RBP11.92□□□□□ -0.5
CUX1-212ENST00000547394 LAMTOR4Q0VGL1 99 aa11.92□□□□□ -0.5
CUX1-212ENST00000547394 NEDD9Q14511 834 aa11.92□□□□□ -0.5
CUX1-212ENST00000547394 IFI16Q16666 785 aaKnown RBP11.92□□□□□ -0.5
CUX1-212ENST00000547394 TTC19Q6DKK2 380 aaPredicted RBP11.92□□□□□ -0.5
CUX1-212ENST00000547394 TMEM270Q6UE05 265 aa11.92□□□□□ -0.5
CUX1-212ENST00000547394 ZNF572Q7Z3I7 529 aaPredicted RBP11.92□□□□□ -0.5
CUX1-212ENST00000547394 SLFN11Q7Z7L1 901 aa11.92□□□□□ -0.5
CUX1-212ENST00000547394 SLC10A4Q96EP9 437 aa11.92□□□□□ -0.5
CUX1-212ENST00000547394 INO80BQ9C086 356 aaPredicted RBP11.92□□□□□ -0.5
CUX1-212ENST00000547394 MTMR12Q9C0I1 747 aa11.92□□□□□ -0.5
CUX1-212ENST00000547394 NEUROG2Q9H2A3 272 aa11.92□□□□□ -0.5
CUX1-212ENST00000547394 C1orf112Q9NSG2 853 aa11.92□□□□□ -0.5
CUX1-212ENST00000547394 LOXHD1Q8IVV2 1947 aa11.91□□□□□ -0.5
CUX1-212ENST00000547394 IGKV6D-21A0A0A0MT36 114 aa11.91□□□□□ -0.5
CUX1-212ENST00000547394 BTNL10A8MVZ5 291 aa11.91□□□□□ -0.5
CUX1-212ENST00000547394 RNF40O75150 1001 aa11.91□□□□□ -0.5
CUX1-212ENST00000547394 NAMPTP43490 491 aa11.91□□□□□ -0.5
CUX1-212ENST00000547394 IRX5P78411 483 aaPredicted RBP11.91□□□□□ -0.5
CUX1-212ENST00000547394 TARBP2Q15633 366 aaKnown RBP11.91□□□□□ -0.5
CUX1-212ENST00000547394 HES6Q96HZ4 224 aa11.91□□□□□ -0.5
CUX1-212ENST00000547394 RNPC3Q96LT9 517 aaKnown RBP11.91□□□□□ -0.5
CUX1-212ENST00000547394 C17orf75Q9HAS0 396 aa11.91□□□□□ -0.5
CUX1-212ENST00000547394 NRBP2Q9NSY0 501 aa11.91□□□□□ -0.5
CUX1-212ENST00000547394 GINS2Q9Y248 185 aa11.91□□□□□ -0.5
CUX1-212ENST00000547394 NUB1Q9Y5A7 615 aa11.91□□□□□ -0.5
CUX1-212ENST00000547394 O00370 1275 aa11.91□□□□□ -0.5
CUX1-212ENST00000547394 CLDN3O15551 220 aa11.91□□□□□ -0.5
CUX1-212ENST00000547394 IQCF3P0C7M6 154 aa11.91□□□□□ -0.5
CUX1-212ENST00000547394 GARTP22102 1010 aa11.91□□□□□ -0.5
CUX1-212ENST00000547394 GJC1P36383 396 aa11.91□□□□□ -0.5
CUX1-212ENST00000547394 FLT3P36888 993 aa11.91□□□□□ -0.5
CUX1-212ENST00000547394 CDR1P51861 262 aa11.91□□□□□ -0.5
CUX1-212ENST00000547394 TUBB4BP68371 445 aa11.91□□□□□ -0.5
CUX1-212ENST00000547394 MAP9Q49MG5 647 aa11.91□□□□□ -0.5
CUX1-212ENST00000547394 HSP90B2PQ58FF3 399 aa11.91□□□□□ -0.5
CUX1-212ENST00000547394 CELF3Q5SZQ8 465 aaKnown RBP11.91□□□□□ -0.5
CUX1-212ENST00000547394 KCTD16Q68DU8 428 aa11.91□□□□□ -0.5
CUX1-212ENST00000547394 DDX1Q92499 740 aaKnown RBP11.91□□□□□ -0.5
CUX1-212ENST00000547394 CYFIP2Q96F07 1278 aa11.91□□□□□ -0.5
CUX1-212ENST00000547394 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.91□□□□□ -0.51e-6■■■□□ 15.3
CUX1-212ENST00000547394 NCANO14594 1321 aa11.91□□□□□ -0.5
CUX1-212ENST00000547394 ARID2Q68CP9 1835 aa11.9□□□□□ -0.5
CUX1-212ENST00000547394 C11orf97A0A1B0GVM6 126 aaPredicted RBP11.9□□□□□ -0.5
CUX1-212ENST00000547394 CXCL11O14625 94 aa11.9□□□□□ -0.5
CUX1-212ENST00000547394 P4HA2O15460 535 aa11.9□□□□□ -0.5
CUX1-212ENST00000547394 GPC5P78333 572 aa11.9□□□□□ -0.5
CUX1-212ENST00000547394 PPIL2Q13356 520 aa11.9□□□□□ -0.5
CUX1-212ENST00000547394 PLCB4Q15147 1175 aa11.9□□□□□ -0.5
CUX1-212ENST00000547394 FAM160B1Q5W0V3 765 aa11.9□□□□□ -0.5
CUX1-212ENST00000547394 EEF1DP3Q658K8 133 aa11.9□□□□□ -0.5
CUX1-212ENST00000547394 TMC2Q8TDI7 906 aa11.9□□□□□ -0.5
CUX1-212ENST00000547394 FAM118BQ9BPY3 351 aa11.9□□□□□ -0.5
CUX1-212ENST00000547394 TAF1DQ9H5J8 278 aaPredicted RBP11.9□□□□□ -0.5
CUX1-212ENST00000547394 FAM204AQ9H8W3 233 aa11.9□□□□□ -0.5
CUX1-212ENST00000547394 SUCLA2Q9P2R7 463 aaPredicted RBP11.9□□□□□ -0.5
CUX1-212ENST00000547394 A0A0B4J269 797 aa11.9□□□□□ -0.5
CUX1-212ENST00000547394 DAPK3O43293 454 aa11.9□□□□□ -0.5
CUX1-212ENST00000547394 ADCY3O60266 1144 aa11.9□□□□□ -0.5
CUX1-212ENST00000547394 GRIN3BO60391 1043 aa11.9□□□□□ -0.5
CUX1-212ENST00000547394 KRT14P02533 472 aa11.9□□□□□ -0.5
CUX1-212ENST00000547394 C4BPAP04003 597 aaKnown RBP11.9□□□□□ -0.5
CUX1-212ENST00000547394 ADCYAP1R1P41586 468 aa11.9□□□□□ -0.5
CUX1-212ENST00000547394 TFAMQ00059 246 aaKnown RBP11.9□□□□□ -0.5
CUX1-212ENST00000547394 ZACNQ401N2 412 aa11.9□□□□□ -0.5
CUX1-212ENST00000547394 ZDHHC14Q8IZN3 488 aa11.9□□□□□ -0.5
CUX1-212ENST00000547394 SLC17A8Q8NDX2 589 aa11.9□□□□□ -0.5
CUX1-212ENST00000547394 OR2W6PQ8NHA6 318 aa11.9□□□□□ -0.5
CUX1-212ENST00000547394 ZNF564Q8TBZ8 553 aaPredicted RBP11.9□□□□□ -0.5
CUX1-212ENST00000547394 LMBR1Q8WVP7 490 aa11.9□□□□□ -0.5
CUX1-212ENST00000547394 NIFKQ9BYG3 293 aaKnown RBP11.9□□□□□ -0.5
CUX1-212ENST00000547394 ISCUQ9H1K1 167 aa11.9□□□□□ -0.5
CUX1-212ENST00000547394 KCNH4Q9UQ05 1017 aa11.9□□□□□ -0.5
CUX1-212ENST00000547394 COQ4Q9Y3A0 265 aa11.9□□□□□ -0.5
CUX1-212ENST00000547394 PCDHB4Q9Y5E5 795 aa11.9□□□□□ -0.5
CUX1-212ENST00000547394 A0A0A6YYK5 440 aaPredicted RBP11.89□□□□□ -0.51
CUX1-212ENST00000547394 GOLGA6BA6NDN3 693 aa11.89□□□□□ -0.51
CUX1-212ENST00000547394 SPOPO43791 374 aa11.89□□□□□ -0.51
CUX1-212ENST00000547394 RTN2O75298 545 aa11.89□□□□□ -0.51
CUX1-212ENST00000547394 MAFO75444 373 aaPredicted RBP11.89□□□□□ -0.51
CUX1-212ENST00000547394 VTNP04004 478 aa11.89□□□□□ -0.51
CUX1-212ENST00000547394 WEE2P0C1S8 567 aa11.89□□□□□ -0.51
CUX1-212ENST00000547394 FGFR4P22455 802 aa11.89□□□□□ -0.51
CUX1-212ENST00000547394 RRM1P23921 792 aa11.89□□□□□ -0.51
CUX1-212ENST00000547394 CDR2Q01850 454 aa11.89□□□□□ -0.51
CUX1-212ENST00000547394 TMEM62Q0P6H9 643 aa11.89□□□□□ -0.51
CUX1-212ENST00000547394 WDR44Q5JSH3 913 aa11.89□□□□□ -0.51
CUX1-212ENST00000547394 ARMCX2Q7L311 632 aa11.89□□□□□ -0.51
CUX1-212ENST00000547394 LENG1Q96BZ8 264 aaPredicted RBP11.89□□□□□ -0.51
CUX1-212ENST00000547394 HVCN1Q96D96 273 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms