RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 PDE1BQ01064 536 aa16.67■□□□□ 0.26
CUX1-211ENST00000546411 ACTN3Q08043 901 aaPredicted RBP16.67■□□□□ 0.26
CUX1-211ENST00000546411 SNCBQ16143 134 aa16.67■□□□□ 0.26
CUX1-211ENST00000546411 SMTNL2Q2TAL5 461 aa16.67■□□□□ 0.26
CUX1-211ENST00000546411 IDI2Q9BXS1 227 aa16.67■□□□□ 0.26
CUX1-211ENST00000546411 ALG13Q9NP73 1137 aaKnown RBP16.67■□□□□ 0.26
CUX1-211ENST00000546411 KCNMB3Q9NPA1 279 aa16.67■□□□□ 0.26
CUX1-211ENST00000546411 AIPL1Q9NZN9 384 aa16.67■□□□□ 0.26
CUX1-211ENST00000546411 TOPAZ1Q8N9V7 1692 aa16.67■□□□□ 0.26
CUX1-211ENST00000546411 GOLGA8RI6L899 631 aa16.67■□□□□ 0.26
CUX1-211ENST00000546411 M0QYV0 167 aa16.67■□□□□ 0.26
CUX1-211ENST00000546411 ZNF263O14978 683 aa16.67■□□□□ 0.26
CUX1-211ENST00000546411 CSDE1O75534 798 aaKnown RBP16.67■□□□□ 0.26
CUX1-211ENST00000546411 GRAP2O75791 330 aa16.67■□□□□ 0.26
CUX1-211ENST00000546411 ARSEP51690 589 aa16.67■□□□□ 0.26
CUX1-211ENST00000546411 ORC1Q13415 861 aa16.67■□□□□ 0.26
CUX1-211ENST00000546411 BAP1Q92560 729 aa16.67■□□□□ 0.26
CUX1-211ENST00000546411 MRPL4Q9BYD3 311 aaKnown RBP16.67■□□□□ 0.26
CUX1-211ENST00000546411 OLFML3Q9NRN5 406 aa16.67■□□□□ 0.26
CUX1-211ENST00000546411 PHF2O75151 1096 aa16.67■□□□□ 0.26
CUX1-211ENST00000546411 PRLRP16471 622 aa16.67■□□□□ 0.26
CUX1-211ENST00000546411 VCAM1P19320 739 aa16.67■□□□□ 0.26
CUX1-211ENST00000546411 MAP2K2P36507 400 aa16.67■□□□□ 0.26
CUX1-211ENST00000546411 TSEN2Q8NCE0 465 aaKnown RBP16.67■□□□□ 0.26
CUX1-211ENST00000546411 PPFIBP2Q8ND30 876 aa16.67■□□□□ 0.26
CUX1-211ENST00000546411 SLC10A4Q96EP9 437 aa16.67■□□□□ 0.26
CUX1-211ENST00000546411 TMEM8AQ9HCN3 771 aa16.67■□□□□ 0.26
CUX1-211ENST00000546411 M0QZ92 97 aa16.66■□□□□ 0.26
CUX1-211ENST00000546411 ZBED1O96006 694 aa16.66■□□□□ 0.26
CUX1-211ENST00000546411 NOP14P78316 857 aaKnown RBP16.66■□□□□ 0.26
CUX1-211ENST00000546411 PDIA2Q13087 525 aaKnown RBP16.66■□□□□ 0.26
CUX1-211ENST00000546411 CRY2Q49AN0 593 aa16.66■□□□□ 0.26
CUX1-211ENST00000546411 SCYL3Q8IZE3 742 aa16.66■□□□□ 0.26
CUX1-211ENST00000546411 RBM41Q96IZ5 413 aaKnown RBP16.66■□□□□ 0.26
CUX1-211ENST00000546411 MCEEQ96PE7 176 aa16.66■□□□□ 0.26
CUX1-211ENST00000546411 FBXO40Q9UH90 709 aa16.66■□□□□ 0.26
CUX1-211ENST00000546411 WNT10BO00744 389 aa16.66■□□□□ 0.26
CUX1-211ENST00000546411 DLG4P78352 724 aa16.66■□□□□ 0.26
CUX1-211ENST00000546411 FAM102AQ5T9C2 384 aaPredicted RBP16.66■□□□□ 0.26
CUX1-211ENST00000546411 MICAL1Q8TDZ2 1067 aa16.66■□□□□ 0.26
CUX1-211ENST00000546411 ZNF473Q8WTR7 871 aaKnown RBP16.66■□□□□ 0.26
CUX1-211ENST00000546411 TTC17Q96AE7 1141 aa16.66■□□□□ 0.26
CUX1-211ENST00000546411 PDCD2LQ9BRP1 358 aa16.66■□□□□ 0.26
CUX1-211ENST00000546411 WDR18Q9BV38 432 aa16.66■□□□□ 0.26
CUX1-211ENST00000546411 PDE4DIPQ5VU43 2346 aa16.66■□□□□ 0.26
CUX1-211ENST00000546411 CHN1P15882 459 aa16.66■□□□□ 0.26
CUX1-211ENST00000546411 OSBPP22059 807 aa16.66■□□□□ 0.26
CUX1-211ENST00000546411 CCNA1P78396 465 aa16.66■□□□□ 0.26
CUX1-211ENST00000546411 ARSHQ5FYA8 562 aa16.66■□□□□ 0.26
CUX1-211ENST00000546411 SV2AQ7L0J3 742 aa16.66■□□□□ 0.26
CUX1-211ENST00000546411 SDCCAG8Q86SQ7 713 aaPredicted RBP16.66■□□□□ 0.26
CUX1-211ENST00000546411 TATDN2Q93075 761 aa16.66■□□□□ 0.26
CUX1-211ENST00000546411 CHMP6Q96FZ7 201 aa16.66■□□□□ 0.26
CUX1-211ENST00000546411 PRMT1Q99873 361 aaKnown RBP16.66■□□□□ 0.26
CUX1-211ENST00000546411 CARD9Q9H257 536 aa16.66■□□□□ 0.26
CUX1-211ENST00000546411 DCTN4Q9UJW0 460 aa16.66■□□□□ 0.26
CUX1-211ENST00000546411 KCPQ6ZWJ8 1503 aa16.66■□□□□ 0.26
CUX1-211ENST00000546411 LMO7Q8WWI1 1683 aa16.66■□□□□ 0.26
CUX1-211ENST00000546411 TXNP10599 105 aaKnown RBP16.66■□□□□ 0.26
CUX1-211ENST00000546411 APTXQ7Z2E3 356 aaKnown RBP16.66■□□□□ 0.26
CUX1-211ENST00000546411 ATP2A3Q93084 1043 aa16.66■□□□□ 0.26
CUX1-211ENST00000546411 SLC38A10Q9HBR0 1119 aa16.66■□□□□ 0.26
CUX1-211ENST00000546411 PCDHB2Q9Y5E7 798 aa16.66■□□□□ 0.26
CUX1-211ENST00000546411 PRKCBP05771 671 aa16.65■□□□□ 0.26
CUX1-211ENST00000546411 TBXAS1P24557 533 aaPredicted RBP16.65■□□□□ 0.26
CUX1-211ENST00000546411 TMEM62Q0P6H9 643 aa16.65■□□□□ 0.26
CUX1-211ENST00000546411 AADACL2Q6P093 401 aa16.65■□□□□ 0.26
CUX1-211ENST00000546411 ARHGEF19Q8IW93 802 aa16.65■□□□□ 0.26
CUX1-211ENST00000546411 CALR3Q96L12 384 aaKnown RBP16.65■□□□□ 0.26
CUX1-211ENST00000546411 BCAS3Q9H6U6 928 aa16.65■□□□□ 0.26
CUX1-211ENST00000546411 TAS2R14Q9NYV8 317 aa16.65■□□□□ 0.26
CUX1-211ENST00000546411 KIF13AQ9H1H9 1805 aa16.65■□□□□ 0.26
CUX1-211ENST00000546411 ARHGAP42A6NI28 874 aa16.65■□□□□ 0.26
CUX1-211ENST00000546411 CPP00450 1065 aa16.65■□□□□ 0.26
CUX1-211ENST00000546411 PSMC4P43686 418 aa16.65■□□□□ 0.26
CUX1-211ENST00000546411 R3HDM1Q15032 1099 aaKnown RBP16.65■□□□□ 0.26
CUX1-211ENST00000546411 MUM1L1Q5H9M0 696 aa16.65■□□□□ 0.26
CUX1-211ENST00000546411 EPM2AIP1Q7L775 607 aaPredicted RBP16.65■□□□□ 0.26
CUX1-211ENST00000546411 ARHGEF26Q96DR7 871 aa16.65■□□□□ 0.26
CUX1-211ENST00000546411 SNF8Q96H20 258 aa16.65■□□□□ 0.26
CUX1-211ENST00000546411 EPN3Q9H201 632 aa16.65■□□□□ 0.26
CUX1-211ENST00000546411 SNX25Q9H3E2 840 aa16.65■□□□□ 0.26
CUX1-211ENST00000546411 SMYD2Q9NRG4 433 aa16.65■□□□□ 0.26
CUX1-211ENST00000546411 UVRAGQ9P2Y5 699 aa16.65■□□□□ 0.26
CUX1-211ENST00000546411 A0A1B0GUA9 196 aa16.65■□□□□ 0.26
CUX1-211ENST00000546411 RALAP11233 206 aa16.65■□□□□ 0.26
CUX1-211ENST00000546411 RRM1P23921 792 aa16.65■□□□□ 0.26
CUX1-211ENST00000546411 RGS7P49802 495 aa16.65■□□□□ 0.26
CUX1-211ENST00000546411 ERVK-9P63128 1117 aa16.65■□□□□ 0.26
CUX1-211ENST00000546411 TRADDQ15628 312 aa16.65■□□□□ 0.26
CUX1-211ENST00000546411 FAF2Q96CS3 445 aa16.65■□□□□ 0.26
CUX1-211ENST00000546411 LBHD1Q9BQE6 289 aaPredicted RBP16.65■□□□□ 0.26
CUX1-211ENST00000546411 OSBPL8Q9BZF1 889 aa16.65■□□□□ 0.26
CUX1-211ENST00000546411 A0A0G2JND7 137 aa16.64■□□□□ 0.25
CUX1-211ENST00000546411 SPATA31C1P0DKV0 1188 aa16.64■□□□□ 0.25
CUX1-211ENST00000546411 CYP11B1P15538 503 aa16.64■□□□□ 0.25
CUX1-211ENST00000546411 SARNPP82979 210 aaKnown RBP16.64■□□□□ 0.25
CUX1-211ENST00000546411 GABPAQ06546 454 aa16.64■□□□□ 0.25
CUX1-211ENST00000546411 MYO1EQ12965 1108 aa16.64■□□□□ 0.25
CUX1-211ENST00000546411 P3H1Q32P28 736 aa16.64■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms