RNA–Protein interactions for RNA: ENST00000546164.5

YBX3-217, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 805 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-217ENST00000546164 SFR1Q86XK3 245 aa12.99□□□□□ -0.33
YBX3-217ENST00000546164 ADAMTS19Q8TE59 1207 aa12.99□□□□□ -0.33
YBX3-217ENST00000546164 LEO1Q8WVC0 666 aaPredicted RBP12.99□□□□□ -0.33
YBX3-217ENST00000546164 HVCN1Q96D96 273 aa12.99□□□□□ -0.33
YBX3-217ENST00000546164 ZBTB45Q96K62 511 aaPredicted RBP12.99□□□□□ -0.33
YBX3-217ENST00000546164 SNX27Q96L92 541 aa12.99□□□□□ -0.33
YBX3-217ENST00000546164 ACAP3Q96P50 834 aa12.99□□□□□ -0.33
YBX3-217ENST00000546164 PPP1R10Q96QC0 940 aaKnown RBP12.99□□□□□ -0.33
YBX3-217ENST00000546164 PYM1Q9BRP8 204 aaKnown RBP12.99□□□□□ -0.33
YBX3-217ENST00000546164 HERC2P3Q9BVR0 1158 aa12.99□□□□□ -0.33
YBX3-217ENST00000546164 CXCL16Q9H2A7 254 aa12.99□□□□□ -0.33
YBX3-217ENST00000546164 ZHX3Q9H4I2 956 aa12.99□□□□□ -0.33
YBX3-217ENST00000546164 IGFLR1Q9H665 355 aa12.99□□□□□ -0.33
YBX3-217ENST00000546164 MAGEF1Q9HAY2 307 aa12.99□□□□□ -0.33
YBX3-217ENST00000546164 CLEC1BQ9P126 229 aa12.99□□□□□ -0.33
YBX3-217ENST00000546164 ANKFY1Q9P2R3 1169 aa12.99□□□□□ -0.33
YBX3-217ENST00000546164 SMIM28A0A1B0GU29 152 aa12.98□□□□□ -0.33
YBX3-217ENST00000546164 GRXCR2A6NFK2 248 aa12.98□□□□□ -0.33
YBX3-217ENST00000546164 DLL1O00548 723 aa12.98□□□□□ -0.33
YBX3-217ENST00000546164 CXCL14O95715 111 aa12.98□□□□□ -0.33
YBX3-217ENST00000546164 NMT1P30419 496 aaKnown RBP12.98□□□□□ -0.33
YBX3-217ENST00000546164 NDUFV1P49821 464 aa12.98□□□□□ -0.33
YBX3-217ENST00000546164 LIG4P49917 911 aa12.98□□□□□ -0.33
YBX3-217ENST00000546164 AMPD3Q01432 767 aa12.98□□□□□ -0.33
YBX3-217ENST00000546164 ALCAMQ13740 583 aa12.98□□□□□ -0.33
YBX3-217ENST00000546164 HSP90AA2PQ14568 343 aaPredicted RBP12.98□□□□□ -0.33
YBX3-217ENST00000546164 KYAT1Q16773 422 aa12.98□□□□□ -0.33
YBX3-217ENST00000546164 ZBTB33Q86T24 672 aa12.98□□□□□ -0.33
YBX3-217ENST00000546164 VN1R2Q8NFZ6 395 aa12.98□□□□□ -0.33
YBX3-217ENST00000546164 DHX58Q96C10 678 aa12.98□□□□□ -0.33
YBX3-217ENST00000546164 BICD1Q96G01 975 aa12.98□□□□□ -0.33
YBX3-217ENST00000546164 TRIM9Q9C026 710 aa12.98□□□□□ -0.33
YBX3-217ENST00000546164 HAPLN2Q9GZV7 340 aa12.98□□□□□ -0.33
YBX3-217ENST00000546164 CHST7Q9NS84 486 aa12.98□□□□□ -0.33
YBX3-217ENST00000546164 FAM13BQ9NYF5 915 aa12.98□□□□□ -0.33
YBX3-217ENST00000546164 CNTN3Q9P232 1028 aa12.98□□□□□ -0.33
YBX3-217ENST00000546164 ADAM28Q9UKQ2 775 aa12.98□□□□□ -0.33
YBX3-217ENST00000546164 A0A0B4J269 797 aa12.97□□□□□ -0.33
YBX3-217ENST00000546164 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP12.97□□□□□ -0.33
YBX3-217ENST00000546164 F8W810 466 aa12.97□□□□□ -0.33
YBX3-217ENST00000546164 TMEM189-UBE2V1I3L0A0 370 aa12.97□□□□□ -0.33
YBX3-217ENST00000546164 MEFVO15553 781 aaPredicted RBP12.97□□□□□ -0.33
YBX3-217ENST00000546164 FAM189A1O60320 539 aa12.97□□□□□ -0.33
YBX3-217ENST00000546164 CLASP2O75122 1294 aaKnown RBP12.97□□□□□ -0.33
YBX3-217ENST00000546164 CLTAP09496 248 aa12.97□□□□□ -0.33
YBX3-217ENST00000546164 OSTNP61366 133 aa12.97□□□□□ -0.33
YBX3-217ENST00000546164 NUCB2P80303 420 aa12.97□□□□□ -0.33
YBX3-217ENST00000546164 DSG1Q02413 1049 aa12.97□□□□□ -0.33
YBX3-217ENST00000546164 COASYQ13057 564 aa12.97□□□□□ -0.33
YBX3-217ENST00000546164 SMAD4Q13485 552 aaKnown RBP12.97□□□□□ -0.33
YBX3-217ENST00000546164 ZC2HC1CQ53FD0 456 aaPredicted RBP12.97□□□□□ -0.33
YBX3-217ENST00000546164 GLRA4Q5JXX5 417 aa12.97□□□□□ -0.33
YBX3-217ENST00000546164 ADALQ6DHV7 355 aa12.97□□□□□ -0.33
YBX3-217ENST00000546164 PTCRAQ6ISU1 281 aaPredicted RBP12.97□□□□□ -0.33
YBX3-217ENST00000546164 FUT10Q6P4F1 479 aa12.97□□□□□ -0.33
YBX3-217ENST00000546164 SLC39A4Q6P5W5 647 aa12.97□□□□□ -0.33
YBX3-217ENST00000546164 EP400NLQ6ZTU2 488 aa12.97□□□□□ -0.33
YBX3-217ENST00000546164 SMRP1Q8NCR6 262 aa12.97□□□□□ -0.33
YBX3-217ENST00000546164 SPATA32Q96LK8 384 aa12.97□□□□□ -0.33
YBX3-217ENST00000546164 UROC1Q96N76 676 aa12.97□□□□□ -0.33
YBX3-217ENST00000546164 UHRF1Q96T88 793 aaPredicted RBP12.97□□□□□ -0.33
YBX3-217ENST00000546164 PAAF1Q9BRP4 392 aa12.97□□□□□ -0.33
YBX3-217ENST00000546164 SCAND2PQ9GZW5 306 aaPredicted RBP12.97□□□□□ -0.33
YBX3-217ENST00000546164 MRPL44Q9H9J2 332 aaKnown RBP12.97□□□□□ -0.33
YBX3-217ENST00000546164 PLEKHA5Q9HAU0 1116 aa12.97□□□□□ -0.33
YBX3-217ENST00000546164 MRPL17Q9NRX2 175 aaKnown RBP12.97□□□□□ -0.33
YBX3-217ENST00000546164 SLC38A7Q9NVC3 462 aa12.97□□□□□ -0.33
YBX3-217ENST00000546164 PANK4Q9NVE7 773 aa12.97□□□□□ -0.33
YBX3-217ENST00000546164 CD207Q9UJ71 328 aa12.97□□□□□ -0.33
YBX3-217ENST00000546164 FAM50BQ9Y247 325 aa12.97□□□□□ -0.33
YBX3-217ENST00000546164 SSX2IPQ9Y2D8 614 aa12.97□□□□□ -0.33
YBX3-217ENST00000546164 GTF3C5Q9Y5Q8 519 aaPredicted RBP12.97□□□□□ -0.33
YBX3-217ENST00000546164 STYXL1Q9Y6J8 313 aa12.97□□□□□ -0.33
YBX3-217ENST00000546164 TDRD15B5MCY1 1934 aaKnown RBP12.97□□□□□ -0.33
YBX3-217ENST00000546164 SF3B1O75533 1304 aaKnown RBP eCLIP12.96□□□□□ -0.33
YBX3-217ENST00000546164 FAM237AA0A1B0GTK4 181 aa12.96□□□□□ -0.33
YBX3-217ENST00000546164 CASTOR2A6NHX0 329 aa12.96□□□□□ -0.33
YBX3-217ENST00000546164 OGTO15294 1046 aa12.96□□□□□ -0.33
YBX3-217ENST00000546164 POLR2DO15514 142 aaKnown RBP12.96□□□□□ -0.33
YBX3-217ENST00000546164 KIF4AO95239 1232 aa12.96□□□□□ -0.33
YBX3-217ENST00000546164 URODP06132 367 aa12.96□□□□□ -0.33
YBX3-217ENST00000546164 ADRB2P07550 413 aa12.96□□□□□ -0.33
YBX3-217ENST00000546164 SRGAP2BP0DMP2 458 aa12.96□□□□□ -0.33
YBX3-217ENST00000546164 HARSP12081 509 aaKnown RBP12.96□□□□□ -0.33
YBX3-217ENST00000546164 IDEP14735 1019 aa12.96□□□□□ -0.33
YBX3-217ENST00000546164 HOXB8P17481 243 aaPredicted RBP12.96□□□□□ -0.33
YBX3-217ENST00000546164 CMA1P23946 247 aa12.96□□□□□ -0.33
YBX3-217ENST00000546164 GLUD2P49448 558 aa12.96□□□□□ -0.33
YBX3-217ENST00000546164 SLC10A6Q3KNW5 377 aa12.96□□□□□ -0.33
YBX3-217ENST00000546164 USP41Q3LFD5 358 aa12.96□□□□□ -0.33
YBX3-217ENST00000546164 HERC4Q5GLZ8 1057 aaPredicted RBP12.96□□□□□ -0.33
YBX3-217ENST00000546164 KIAA0319Q5VV43 1072 aa12.96□□□□□ -0.33
YBX3-217ENST00000546164 SLFN12LQ6IEE8 588 aa12.96□□□□□ -0.33
YBX3-217ENST00000546164 PPFIBP1Q86W92 1011 aa12.96□□□□□ -0.33
YBX3-217ENST00000546164 CCDC65Q8IXS2 484 aa12.96□□□□□ -0.33
YBX3-217ENST00000546164 AUTS2Q8WXX7 1259 aa12.96□□□□□ -0.33
YBX3-217ENST00000546164 CASP10Q92851 521 aa12.96□□□□□ -0.33
YBX3-217ENST00000546164 ZMAT2Q96NC0 199 aaKnown RBP12.96□□□□□ -0.33
YBX3-217ENST00000546164 DCBLD2Q96PD2 775 aa12.96□□□□□ -0.33
YBX3-217ENST00000546164 C7orf25Q9BPX7 421 aa12.96□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms