RNA–Protein interactions for RNA: ENST00000545689.2

COL4A6-209, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,380 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-209ENST00000545689 CYFIP1Q7L576 1253 aa13.25□□□□□ -0.29
COL4A6-209ENST00000545689 VPS11Q9H270 941 aa13.25□□□□□ -0.29
COL4A6-209ENST00000545689 JMJD4Q9H9V9 463 aa13.25□□□□□ -0.29
COL4A6-209ENST00000545689 KIF9Q9HAQ2 790 aa13.25□□□□□ -0.29
COL4A6-209ENST00000545689 IL18RAPO95256 599 aa13.24□□□□□ -0.29
COL4A6-209ENST00000545689 SERPINB9P50453 376 aa13.24□□□□□ -0.29
COL4A6-209ENST00000545689 SGSM1Q2NKQ1 1148 aa13.24□□□□□ -0.29
COL4A6-209ENST00000545689 KIF19Q2TAC6 998 aa13.24□□□□□ -0.29
COL4A6-209ENST00000545689 KLHDC7AQ5VTJ3 777 aa13.24□□□□□ -0.29
COL4A6-209ENST00000545689 C1orf146Q5VVC0 180 aa13.24□□□□□ -0.29
COL4A6-209ENST00000545689 PRR5LQ6MZQ0 368 aa13.24□□□□□ -0.29
COL4A6-209ENST00000545689 CDC42EP5Q6NZY7 148 aa13.24□□□□□ -0.29
COL4A6-209ENST00000545689 MTHFD1LQ6UB35 978 aa13.24□□□□□ -0.29
COL4A6-209ENST00000545689 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP13.24□□□□□ -0.29
COL4A6-209ENST00000545689 USP38Q8NB14 1042 aa13.24□□□□□ -0.29
COL4A6-209ENST00000545689 RBM46Q8TBY0 533 aaKnown RBP13.24□□□□□ -0.29
COL4A6-209ENST00000545689 IFT43Q96FT9 208 aa13.24□□□□□ -0.29
COL4A6-209ENST00000545689 PCSK1NQ9UHG2 260 aa13.24□□□□□ -0.29
COL4A6-209ENST00000545689 MAGED2Q9UNF1 606 aaPredicted RBP13.24□□□□□ -0.29
COL4A6-209ENST00000545689 NWD1Q149M9 1564 aa13.24□□□□□ -0.29
COL4A6-209ENST00000545689 PRLRP16471 622 aa13.24□□□□□ -0.29
COL4A6-209ENST00000545689 SNRNP35Q16560 246 aaKnown RBP13.24□□□□□ -0.29
COL4A6-209ENST00000545689 ELMSAN1Q6PJG2 1045 aa13.24□□□□□ -0.29
COL4A6-209ENST00000545689 FASTKD5Q7L8L6 764 aaKnown RBP13.24□□□□□ -0.29
COL4A6-209ENST00000545689 C3orf20Q8ND61 904 aa13.24□□□□□ -0.29
COL4A6-209ENST00000545689 ZNF473Q8WTR7 871 aaKnown RBP13.24□□□□□ -0.29
COL4A6-209ENST00000545689 ANKEF1Q9NU02 776 aa13.24□□□□□ -0.29
COL4A6-209ENST00000545689 CHGBP05060 677 aa13.24□□□□□ -0.29
COL4A6-209ENST00000545689 EIF3EP60228 445 aaKnown RBP13.24□□□□□ -0.29
COL4A6-209ENST00000545689 PPP1R2P1Q96PQ5 205 aa13.24□□□□□ -0.29
COL4A6-209ENST00000545689 PPLO60437 1756 aa13.24□□□□□ -0.29
COL4A6-209ENST00000545689 CDH6P55285 790 aa13.24□□□□□ -0.29
COL4A6-209ENST00000545689 NOP14P78316 857 aaKnown RBP13.24□□□□□ -0.29
COL4A6-209ENST00000545689 TRABDQ9H4I3 376 aa13.24□□□□□ -0.29
COL4A6-209ENST00000545689 ZCCHC17Q9NP64 241 aaKnown RBP13.24□□□□□ -0.29
COL4A6-209ENST00000545689 MRGBPQ9NV56 204 aa13.24□□□□□ -0.29
COL4A6-209ENST00000545689 FHOD1Q9Y613 1164 aa13.24□□□□□ -0.29
COL4A6-209ENST00000545689 SNX2O60749 519 aa13.24□□□□□ -0.29
COL4A6-209ENST00000545689 MYBP10242 640 aa13.24□□□□□ -0.29
COL4A6-209ENST00000545689 STAT5BP51692 787 aa13.24□□□□□ -0.29
COL4A6-209ENST00000545689 ARHGAP18Q8N392 663 aa13.24□□□□□ -0.29
COL4A6-209ENST00000545689 SAMD3Q8N6K7 520 aa13.24□□□□□ -0.29
COL4A6-209ENST00000545689 MXRA8Q9BRK3 442 aa13.24□□□□□ -0.29
COL4A6-209ENST00000545689 VCPKMTQ9H867 229 aa13.24□□□□□ -0.29
COL4A6-209ENST00000545689 C17orf75Q9HAS0 396 aa13.24□□□□□ -0.29
COL4A6-209ENST00000545689 JCADQ9P266 1359 aa13.24□□□□□ -0.29
COL4A6-209ENST00000545689 ADGRB2O60241 1585 aa13.24□□□□□ -0.29
COL4A6-209ENST00000545689 URGCPQ8TCY9 931 aa13.23□□□□□ -0.29
COL4A6-209ENST00000545689 C18orf8Q96DM3 657 aa13.23□□□□□ -0.29
COL4A6-209ENST00000545689 GJD4Q96KN9 370 aaPredicted RBP13.23□□□□□ -0.29
COL4A6-209ENST00000545689 ETNK1Q9HBU6 452 aa13.23□□□□□ -0.29
COL4A6-209ENST00000545689 PRR12Q9ULL5 1215 aa13.23□□□□□ -0.29
COL4A6-209ENST00000545689 CATSPER1Q8NEC5 780 aa13.23□□□□□ -0.29
COL4A6-209ENST00000545689 IRX2Q9BZI1 471 aaPredicted RBP13.23□□□□□ -0.29
COL4A6-209ENST00000545689 RBM12Q9NTZ6 932 aaKnown RBP13.23□□□□□ -0.29
COL4A6-209ENST00000545689 MCF2P10911 925 aa13.23□□□□□ -0.29
COL4A6-209ENST00000545689 FGFR4P22455 802 aa13.23□□□□□ -0.29
COL4A6-209ENST00000545689 COG2Q14746 738 aa13.23□□□□□ -0.29
COL4A6-209ENST00000545689 TWF2Q6IBS0 349 aaKnown RBP13.23□□□□□ -0.29
COL4A6-209ENST00000545689 SRLQ86TD4 932 aa13.23□□□□□ -0.29
COL4A6-209ENST00000545689 GTF3C2Q8WUA4 911 aaPredicted RBP13.23□□□□□ -0.29
COL4A6-209ENST00000545689 PSMC3IPQ9P2W1 217 aaPredicted RBP13.23□□□□□ -0.29
COL4A6-209ENST00000545689 L3MBTL1Q9Y468 752 aa13.23□□□□□ -0.29
COL4A6-209ENST00000545689 PCDHB2Q9Y5E7 798 aa13.23□□□□□ -0.29
COL4A6-209ENST00000545689 A8MXQ7 604 aa13.23□□□□□ -0.29
COL4A6-209ENST00000545689 TRPA1O75762 1119 aa13.23□□□□□ -0.29
COL4A6-209ENST00000545689 ELF1P32519 619 aa13.23□□□□□ -0.29
COL4A6-209ENST00000545689 GUCY1A3Q02108 690 aa13.23□□□□□ -0.29
COL4A6-209ENST00000545689 TROAPQ12815 778 aa13.23□□□□□ -0.29
COL4A6-209ENST00000545689 FRA10AC1Q70Z53 315 aa13.23□□□□□ -0.29
COL4A6-209ENST00000545689 REXO1L1PQ8IX06 675 aa13.23□□□□□ -0.29
COL4A6-209ENST00000545689 ZNF710Q8N1W2 664 aa13.23□□□□□ -0.29
COL4A6-209ENST00000545689 FAM151AQ8WW52 585 aa13.23□□□□□ -0.29
COL4A6-209ENST00000545689 KRT35Q92764 455 aa13.23□□□□□ -0.29
COL4A6-209ENST00000545689 HPS3Q969F9 1004 aa13.23□□□□□ -0.29
COL4A6-209ENST00000545689 TEX13BQ9BXU2 312 aa13.23□□□□□ -0.29
COL4A6-209ENST00000545689 KLC4Q9NSK0 619 aa13.23□□□□□ -0.29
COL4A6-209ENST00000545689 PIK3R2O00459 728 aa13.23□□□□□ -0.29
COL4A6-209ENST00000545689 APOEP02649 317 aa13.23□□□□□ -0.29
COL4A6-209ENST00000545689 SPATA31D1Q6ZQQ2 1576 aa13.23□□□□□ -0.29
COL4A6-209ENST00000545689 FRMD8P1Q9BZ68 369 aaPredicted RBP13.23□□□□□ -0.29
COL4A6-209ENST00000545689 EML4Q9HC35 981 aaKnown RBP13.23□□□□□ -0.29
COL4A6-209ENST00000545689 MAP3K20Q9NYL2 800 aaKnown RBP13.23□□□□□ -0.29
COL4A6-209ENST00000545689 ZNRF3Q9ULT6 936 aa13.23□□□□□ -0.29
COL4A6-209ENST00000545689 ARPP19P56211 112 aa13.22□□□□□ -0.29
COL4A6-209ENST00000545689 RBP5P82980 135 aa13.22□□□□□ -0.29
COL4A6-209ENST00000545689 IL1RL1Q01638 556 aa13.22□□□□□ -0.29
COL4A6-209ENST00000545689 ZC3H18Q86VM9 953 aaKnown RBP13.22□□□□□ -0.29
COL4A6-209ENST00000545689 TRIML2Q8N7C3 387 aa13.22□□□□□ -0.29
COL4A6-209ENST00000545689 SH3TC2Q8TF17 1288 aa13.22□□□□□ -0.29
COL4A6-209ENST00000545689 SENP2Q9HC62 589 aa13.22□□□□□ -0.29
COL4A6-209ENST00000545689 DYNC1LI1Q9Y6G9 523 aaKnown RBP13.22□□□□□ -0.29
COL4A6-209ENST00000545689 NPEPPSP55786 919 aa13.22□□□□□ -0.29
COL4A6-209ENST00000545689 TRADDQ15628 312 aa13.22□□□□□ -0.29
COL4A6-209ENST00000545689 JAMLQ86YT9 394 aa13.22□□□□□ -0.29
COL4A6-209ENST00000545689 AGGF1Q8N302 714 aaeCLIP13.22□□□□□ -0.29
COL4A6-209ENST00000545689 C2orf69Q8N8R5 385 aa13.22□□□□□ -0.29
COL4A6-209ENST00000545689 ARHGEF26Q96DR7 871 aa13.22□□□□□ -0.29
COL4A6-209ENST00000545689 MS4A14Q96JA4 679 aa13.22□□□□□ -0.29
COL4A6-209ENST00000545689 EIF2AQ9BY44 585 aaKnown RBP13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms