RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 JAMLQ86YT9 394 aa19.34■□□□□ 0.69
VIM-209ENST00000544301 ZDHHC14Q8IZN3 488 aa19.34■□□□□ 0.69
VIM-209ENST00000544301 UBLCP1Q8WVY7 318 aaPredicted RBP19.34■□□□□ 0.69
VIM-209ENST00000544301 PSPC1Q8WXF1 523 aaKnown RBP19.34■□□□□ 0.69
VIM-209ENST00000544301 TMEM143Q96AN5 459 aa19.34■□□□□ 0.69
VIM-209ENST00000544301 ZNF302Q9NR11 478 aa19.34■□□□□ 0.69
VIM-209ENST00000544301 KCNG1Q9UIX4 513 aa19.34■□□□□ 0.69
VIM-209ENST00000544301 RRP15Q9Y3B9 282 aaKnown RBP19.34■□□□□ 0.69
VIM-209ENST00000544301 MYH9P35579 1960 aaKnown RBP19.34■□□□□ 0.69
VIM-209ENST00000544301 GGPS1O95749 300 aa19.33■□□□□ 0.69
VIM-209ENST00000544301 CALCAP01258 141 aa19.33■□□□□ 0.69
VIM-209ENST00000544301 MYZAPP0CAP1 466 aa19.33■□□□□ 0.69
VIM-209ENST00000544301 CHRNA3P32297 505 aa19.33■□□□□ 0.69
VIM-209ENST00000544301 PTGIRP43119 386 aa19.33■□□□□ 0.69
VIM-209ENST00000544301 CNTN2Q02246 1040 aa19.33■□□□□ 0.69
VIM-209ENST00000544301 DHX9Q08211 1270 aaKnown RBP19.33■□□□□ 0.69
VIM-209ENST00000544301 SEL1L2Q5TEA6 688 aa19.33■□□□□ 0.69
VIM-209ENST00000544301 C18orf8Q96DM3 657 aa19.33■□□□□ 0.69
VIM-209ENST00000544301 ZDHHC18Q9NUE0 388 aa19.33■□□□□ 0.69
VIM-209ENST00000544301 PCDHA3Q9Y5H8 950 aa19.33■□□□□ 0.69
VIM-209ENST00000544301 STYXL1Q9Y6J8 313 aa19.33■□□□□ 0.69
VIM-209ENST00000544301 LOC285556D6RIA3 1793 aa19.33■□□□□ 0.68
VIM-209ENST00000544301 SPOPO43791 374 aa19.33■□□□□ 0.68
VIM-209ENST00000544301 OATP04181 439 aa19.33■□□□□ 0.68
VIM-209ENST00000544301 WNT7BP56706 349 aa19.33■□□□□ 0.68
VIM-209ENST00000544301 NLRP11P59045 1033 aaKnown RBP19.33■□□□□ 0.68
VIM-209ENST00000544301 STRN3Q13033 797 aa19.33■□□□□ 0.68
VIM-209ENST00000544301 SH3D19Q5HYK7 790 aa19.33■□□□□ 0.68
VIM-209ENST00000544301 LMBRD2Q68DH5 695 aaPredicted RBP19.33■□□□□ 0.68
VIM-209ENST00000544301 DNERQ8NFT8 737 aa19.33■□□□□ 0.68
VIM-209ENST00000544301 ASAP3Q8TDY4 903 aa19.33■□□□□ 0.68
VIM-209ENST00000544301 FAM81BQ96LP2 452 aa19.33■□□□□ 0.68
VIM-209ENST00000544301 FMO2Q99518 471 aa19.33■□□□□ 0.68
VIM-209ENST00000544301 TXLNGYQ9BZA5 131 aa19.33■□□□□ 0.68
VIM-209ENST00000544301 PORCNQ9H237 461 aa19.33■□□□□ 0.68
VIM-209ENST00000544301 C1orf112Q9NSG2 853 aa19.33■□□□□ 0.68
VIM-209ENST00000544301 MYO1FO00160 1098 aa19.32■□□□□ 0.68
VIM-209ENST00000544301 PPFIA2O75334 1257 aa19.32■□□□□ 0.68
VIM-209ENST00000544301 DRG2P55039 364 aaKnown RBP19.32■□□□□ 0.68
VIM-209ENST00000544301 CHST13Q8NET6 341 aa19.32■□□□□ 0.68
VIM-209ENST00000544301 KCNN1Q92952 543 aa19.32■□□□□ 0.68
VIM-209ENST00000544301 MAGOHBQ96A72 148 aaKnown RBP19.32■□□□□ 0.68
VIM-209ENST00000544301 HAPLN2Q9GZV7 340 aa19.32■□□□□ 0.68
VIM-209ENST00000544301 DHX33Q9H6R0 707 aaKnown RBP19.32■□□□□ 0.68
VIM-209ENST00000544301 GPRC5DQ9NZD1 345 aa19.32■□□□□ 0.68
VIM-209ENST00000544301 CNOT8Q9UFF9 292 aaKnown RBP19.32■□□□□ 0.68
VIM-209ENST00000544301 PCYOX1Q9UHG3 505 aa19.32■□□□□ 0.68
VIM-209ENST00000544301 AGO2Q9UKV8 859 aaKnown RBP19.32■□□□□ 0.68
VIM-209ENST00000544301 PPP2R3BQ9Y5P8 575 aa19.32■□□□□ 0.68
VIM-209ENST00000544301 KIAA0391O15091 583 aaKnown RBP19.31■□□□□ 0.68
VIM-209ENST00000544301 C4BPAP04003 597 aaKnown RBP19.31■□□□□ 0.68
VIM-209ENST00000544301 GLRA2P23416 452 aa19.31■□□□□ 0.68
VIM-209ENST00000544301 PRKG1Q13976 671 aa19.31■□□□□ 0.68
VIM-209ENST00000544301 ZACNQ401N2 412 aa19.31■□□□□ 0.68
VIM-209ENST00000544301 TTC27Q6P3X3 843 aa19.31■□□□□ 0.68
VIM-209ENST00000544301 DDX55Q8NHQ9 600 aaKnown RBP eCLIP19.31■□□□□ 0.68
VIM-209ENST00000544301 BCAS4Q8TDM0 211 aa19.31■□□□□ 0.68
VIM-209ENST00000544301 FNBP1Q96RU3 617 aa19.31■□□□□ 0.68
VIM-209ENST00000544301 RASAL2Q9UJF2 1139 aa19.31■□□□□ 0.68
VIM-209ENST00000544301 PIGRP01833 764 aa19.31■□□□□ 0.68
VIM-209ENST00000544301 HLA-DRAP01903 254 aa19.31■□□□□ 0.68
VIM-209ENST00000544301 UNGP13051 313 aaPredicted RBP19.31■□□□□ 0.68
VIM-209ENST00000544301 TNNI1P19237 187 aa19.31■□□□□ 0.68
VIM-209ENST00000544301 ARL2P36404 184 aa19.31■□□□□ 0.68
VIM-209ENST00000544301 NAMPTP43490 491 aa19.31■□□□□ 0.68
VIM-209ENST00000544301 ACOT2P49753 483 aa19.31■□□□□ 0.68
VIM-209ENST00000544301 HIRAP54198 1017 aaPredicted RBP19.31■□□□□ 0.68
VIM-209ENST00000544301 SKIDA1Q1XH10 827 aa19.31■□□□□ 0.68
VIM-209ENST00000544301 WDR44Q5JSH3 913 aa19.31■□□□□ 0.68
VIM-209ENST00000544301 TDRD10Q5VZ19 366 aaKnown RBP19.31■□□□□ 0.68
VIM-209ENST00000544301 CRELD2Q6UXH1 353 aaPredicted RBP19.31■□□□□ 0.68
VIM-209ENST00000544301 SEPT14Q6ZU15 432 aa19.31■□□□□ 0.68
VIM-209ENST00000544301 SLC13A5Q86YT5 568 aaPredicted RBP19.31■□□□□ 0.68
VIM-209ENST00000544301 EFCAB13Q8IY85 973 aa19.31■□□□□ 0.68
VIM-209ENST00000544301 ANKRD35Q8N283 1001 aa19.31■□□□□ 0.68
VIM-209ENST00000544301 CENPHQ9H3R5 247 aa19.31■□□□□ 0.68
VIM-209ENST00000544301 CD2APQ9Y5K6 639 aa19.31■□□□□ 0.68
VIM-209ENST00000544301 TCRBV7S2A1N4TA0A589 114 aa19.3■□□□□ 0.68
VIM-209ENST00000544301 RUFY4Q6ZNE9 571 aa19.3■□□□□ 0.68
VIM-209ENST00000544301 DEPTORQ8TB45 409 aa19.3■□□□□ 0.68
VIM-209ENST00000544301 ZBTB45Q96K62 511 aaPredicted RBP19.3■□□□□ 0.68
VIM-209ENST00000544301 CEP89Q96ST8 783 aa19.3■□□□□ 0.68
VIM-209ENST00000544301 RABEP2Q9H5N1 569 aa19.3■□□□□ 0.68
VIM-209ENST00000544301 SNX24Q9Y343 169 aa19.3■□□□□ 0.68
VIM-209ENST00000544301 PTPRJQ12913 1337 aa19.3■□□□□ 0.68
VIM-209ENST00000544301 WDR90Q96KV7 1748 aa19.3■□□□□ 0.68
VIM-209ENST00000544301 IGKV6D-21A0A0A0MT36 114 aa19.3■□□□□ 0.68
VIM-209ENST00000544301 LRRIQ4A6NIV6 560 aa19.3■□□□□ 0.68
VIM-209ENST00000544301 PEX10O60683 326 aa19.3■□□□□ 0.68
VIM-209ENST00000544301 USP2O75604 605 aaPredicted RBP19.3■□□□□ 0.68
VIM-209ENST00000544301 SCP2P22307 547 aa19.3■□□□□ 0.68
VIM-209ENST00000544301 RWDD2BP57060 319 aa19.3■□□□□ 0.68
VIM-209ENST00000544301 GUCY1A3Q02108 690 aa19.3■□□□□ 0.68
VIM-209ENST00000544301 BIRC3Q13489 604 aa19.3■□□□□ 0.68
VIM-209ENST00000544301 CYP1B1Q16678 543 aa19.3■□□□□ 0.68
VIM-209ENST00000544301 SPDYCQ5MJ68 293 aa19.3■□□□□ 0.68
VIM-209ENST00000544301 ZDHHC24Q6UX98 284 aa19.3■□□□□ 0.68
VIM-209ENST00000544301 NIFKQ9BYG3 293 aaKnown RBP19.3■□□□□ 0.68
VIM-209ENST00000544301 ATP8A1Q9Y2Q0 1164 aa19.3■□□□□ 0.68
VIM-209ENST00000544301 PCDHB2Q9Y5E7 798 aa19.3■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms