RNA–Protein interactions for RNA: ENST00000543552.5

RTN3-213, Transcript of reticulon 3, humanhuman

TSL 4

Gene RTN3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-213ENST00000543552 VCPP55072 806 aaKnown RBP14.41□□□□□ -0.1
RTN3-213ENST00000543552 PSMD5Q16401 504 aa14.41□□□□□ -0.1
RTN3-213ENST00000543552 RTP2Q5QGT7 225 aa14.41□□□□□ -0.1
RTN3-213ENST00000543552 NT5DC1Q5TFE4 455 aa14.41□□□□□ -0.1
RTN3-213ENST00000543552 EEF1DP3Q658K8 133 aa14.41□□□□□ -0.1
RTN3-213ENST00000543552 LILRA6Q6PI73 481 aa14.41□□□□□ -0.1
RTN3-213ENST00000543552 PDZRN4Q6ZMN7 1036 aaPredicted RBP14.41□□□□□ -0.1
RTN3-213ENST00000543552 CEP57Q86XR8 500 aa14.41□□□□□ -0.1
RTN3-213ENST00000543552 GLYCTKQ8IVS8 523 aa14.41□□□□□ -0.1
RTN3-213ENST00000543552 HASPINQ8TF76 798 aa14.41□□□□□ -0.1
RTN3-213ENST00000543552 RABGGTAQ92696 567 aa14.41□□□□□ -0.1
RTN3-213ENST00000543552 PAAF1Q9BRP4 392 aa14.41□□□□□ -0.1
RTN3-213ENST00000543552 PRKD2Q9BZL6 878 aa14.41□□□□□ -0.1
RTN3-213ENST00000543552 KCNK12Q9HB15 430 aa14.41□□□□□ -0.1
RTN3-213ENST00000543552 KCND2Q9NZV8 630 aa14.41□□□□□ -0.1
RTN3-213ENST00000543552 EPS15L1Q9UBC2 864 aa14.41□□□□□ -0.1
RTN3-213ENST00000543552 FBXL21Q9UKT6 434 aa14.41□□□□□ -0.1
RTN3-213ENST00000543552 DUSP12Q9UNI6 340 aa14.41□□□□□ -0.1
RTN3-213ENST00000543552 MYO10Q9HD67 2058 aa14.4□□□□□ -0.1
RTN3-213ENST00000543552 PP2D1A8MPX8 630 aa14.4□□□□□ -0.1
RTN3-213ENST00000543552 E9PMD0 336 aa14.4□□□□□ -0.1
RTN3-213ENST00000543552 XYLBO75191 536 aa14.4□□□□□ -0.1
RTN3-213ENST00000543552 ZMYND10O75800 440 aa14.4□□□□□ -0.1
RTN3-213ENST00000543552 B3GAT3O94766 335 aa14.4□□□□□ -0.1
RTN3-213ENST00000543552 EDN1P05305 212 aa14.4□□□□□ -0.1
RTN3-213ENST00000543552 HNRNPA1P09651 372 aaKnown RBP eCLIP14.4□□□□□ -0.1
RTN3-213ENST00000543552 SPATA31D3P0C874 917 aa14.4□□□□□ -0.1
RTN3-213ENST00000543552 RPL17P18621 184 aaKnown RBP14.4□□□□□ -0.1
RTN3-213ENST00000543552 GUCY2CP25092 1073 aa14.4□□□□□ -0.1
RTN3-213ENST00000543552 GRM5P41594 1212 aa14.4□□□□□ -0.1
RTN3-213ENST00000543552 CLCN5P51795 746 aa14.4□□□□□ -0.1
RTN3-213ENST00000543552 ATP2C1P98194 919 aaPredicted RBP14.4□□□□□ -0.1
RTN3-213ENST00000543552 STRN3Q13033 797 aa14.4□□□□□ -0.1
RTN3-213ENST00000543552 ZRSR1Q15695 479 aaKnown RBP14.4□□□□□ -0.1
RTN3-213ENST00000543552 NAB2Q15742 525 aa14.4□□□□□ -0.1
RTN3-213ENST00000543552 ARL6IP4Q66PJ3 421 aaKnown RBP14.4□□□□□ -0.1
RTN3-213ENST00000543552 ASTLQ6HA08 431 aaPredicted RBP14.4□□□□□ -0.1
RTN3-213ENST00000543552 DCLRE1AQ6PJP8 1040 aa14.4□□□□□ -0.1
RTN3-213ENST00000543552 PRSS55Q6UWB4 352 aaPredicted RBP14.4□□□□□ -0.1
RTN3-213ENST00000543552 SPATA31D4Q6ZUB0 917 aa14.4□□□□□ -0.1
RTN3-213ENST00000543552 ZNF707Q96C28 371 aaPredicted RBP14.4□□□□□ -0.1
RTN3-213ENST00000543552 TMX3Q96JJ7 454 aa14.4□□□□□ -0.1
RTN3-213ENST00000543552 PPP1R10Q96QC0 940 aaKnown RBP14.4□□□□□ -0.1
RTN3-213ENST00000543552 ACO2Q99798 780 aaKnown RBP14.4□□□□□ -0.1
RTN3-213ENST00000543552 TCHPQ9BT92 498 aa14.4□□□□□ -0.1
RTN3-213ENST00000543552 ARHGAP28Q9P2N2 729 aa14.4□□□□□ -0.1
RTN3-213ENST00000543552 CACNG4Q9UBN1 327 aa14.4□□□□□ -0.1
RTN3-213ENST00000543552 FBXW11Q9UKB1 542 aa14.4□□□□□ -0.1
RTN3-213ENST00000543552 ZSCAN21Q9Y5A6 473 aaPredicted RBP14.4□□□□□ -0.1
RTN3-213ENST00000543552 ZFP37Q9Y6Q3 630 aaPredicted RBP14.4□□□□□ -0.1
RTN3-213ENST00000543552 H0YCG3 227 aa14.39□□□□□ -0.11
RTN3-213ENST00000543552 SLC26A4O43511 780 aa14.39□□□□□ -0.11
RTN3-213ENST00000543552 GALR2O43603 387 aaPredicted RBP14.39□□□□□ -0.11
RTN3-213ENST00000543552 PDGFBP01127 241 aaPredicted RBP14.39□□□□□ -0.11
RTN3-213ENST00000543552 MCF2P10911 925 aa14.39□□□□□ -0.11
RTN3-213ENST00000543552 GJB2P29033 226 aa14.39□□□□□ -0.11
RTN3-213ENST00000543552 HOXA9P31269 272 aa14.39□□□□□ -0.11
RTN3-213ENST00000543552 TCF15Q12870 199 aa14.39□□□□□ -0.11
RTN3-213ENST00000543552 PPM1LQ5SGD2 360 aa14.39□□□□□ -0.11
RTN3-213ENST00000543552 HYIQ5T013 277 aa14.39□□□□□ -0.11
RTN3-213ENST00000543552 RINT1Q6NUQ1 792 aa14.39□□□□□ -0.11
RTN3-213ENST00000543552 MPZL3Q6UWV2 235 aa14.39□□□□□ -0.11
RTN3-213ENST00000543552 C1orf186Q6ZWK4 172 aa14.39□□□□□ -0.11
RTN3-213ENST00000543552 RTL10Q7L3V2 364 aa14.39□□□□□ -0.11
RTN3-213ENST00000543552 LNX1Q8TBB1 728 aaPredicted RBP14.39□□□□□ -0.11
RTN3-213ENST00000543552 SPIRE2Q8WWL2 714 aa14.39□□□□□ -0.11
RTN3-213ENST00000543552 DDX27Q96GQ7 796 aaKnown RBP14.39□□□□□ -0.11
RTN3-213ENST00000543552 AK8Q96MA6 479 aa14.39□□□□□ -0.11
RTN3-213ENST00000543552 RUSC1Q9BVN2 902 aa14.39□□□□□ -0.11
RTN3-213ENST00000543552 CDT1Q9H211 546 aa14.39□□□□□ -0.11
RTN3-213ENST00000543552 SMC3Q9UQE7 1217 aa14.39□□□□□ -0.11
RTN3-213ENST00000543552 USP20Q9Y2K6 914 aa14.39□□□□□ -0.11
RTN3-213ENST00000543552 CACNA1HO95180 2353 aa14.39□□□□□ -0.11
RTN3-213ENST00000543552 MTCL1Q9Y4B5 1905 aaKnown RBP14.39□□□□□ -0.11
RTN3-213ENST00000543552 USP34Q70CQ2 3546 aa14.38□□□□□ -0.11
RTN3-213ENST00000543552 VWA3AA6NCI4 1184 aa14.38□□□□□ -0.11
RTN3-213ENST00000543552 BMP15O95972 392 aa14.38□□□□□ -0.11
RTN3-213ENST00000543552 C8AP07357 584 aa14.38□□□□□ -0.11
RTN3-213ENST00000543552 MYBP10242 640 aa14.38□□□□□ -0.11
RTN3-213ENST00000543552 SCP2P22307 547 aa14.38□□□□□ -0.11
RTN3-213ENST00000543552 FGFR3P22607 806 aa14.38□□□□□ -0.11
RTN3-213ENST00000543552 CDC25AP30304 524 aa14.38□□□□□ -0.11
RTN3-213ENST00000543552 IL17AQ16552 155 aa14.38□□□□□ -0.11
RTN3-213ENST00000543552 UPP1Q16831 310 aa14.38□□□□□ -0.11
RTN3-213ENST00000543552 GLRA4Q5JXX5 417 aa14.38□□□□□ -0.11
RTN3-213ENST00000543552 ANKS3Q6ZW76 656 aa14.38□□□□□ -0.11
RTN3-213ENST00000543552 GET4Q7L5D6 327 aaPredicted RBP14.38□□□□□ -0.11
RTN3-213ENST00000543552 DAW1Q8N136 415 aa14.38□□□□□ -0.11
RTN3-213ENST00000543552 ATOH1Q92858 354 aaPredicted RBP14.38□□□□□ -0.11
RTN3-213ENST00000543552 ACAP3Q96P50 834 aa14.38□□□□□ -0.11
RTN3-213ENST00000543552 CLSTN3Q9BQT9 956 aa14.38□□□□□ -0.11
RTN3-213ENST00000543552 NTPCRQ9BSD7 190 aaKnown RBP14.38□□□□□ -0.11
RTN3-213ENST00000543552 SMOC2Q9H3U7 446 aa14.38□□□□□ -0.11
RTN3-213ENST00000543552 POLD4Q9HCU8 107 aa14.38□□□□□ -0.11
RTN3-213ENST00000543552 GTF3C5Q9Y5Q8 519 aaPredicted RBP14.38□□□□□ -0.11
RTN3-213ENST00000543552 SMIM28A0A1B0GU29 152 aa14.37□□□□□ -0.11
RTN3-213ENST00000543552 SLC16A4O15374 487 aa14.37□□□□□ -0.11
RTN3-213ENST00000543552 N4BP1O75113 896 aaKnown RBP14.37□□□□□ -0.11
RTN3-213ENST00000543552 TOM1L1O75674 476 aa14.37□□□□□ -0.11
RTN3-213ENST00000543552 POU2F2P09086 479 aa14.37□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms