RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 MMP3P08254 477 aa5.69□□□□□ -1.5
CLIP1-217ENST00000543205 HOXD8P13378 290 aaPredicted RBP5.69□□□□□ -1.5
CLIP1-217ENST00000543205 ALAS2P22557 587 aa5.69□□□□□ -1.5
CLIP1-217ENST00000543205 ACLYP53396 1101 aa5.69□□□□□ -1.5
CLIP1-217ENST00000543205 FAM160A1Q05DH4 1040 aa5.69□□□□□ -1.5
CLIP1-217ENST00000543205 ITGB3BPQ13352 177 aaPredicted RBP5.69□□□□□ -1.5
CLIP1-217ENST00000543205 CALCRLQ16602 461 aa5.69□□□□□ -1.5
CLIP1-217ENST00000543205 ELOA3BQ3SY89 546 aa5.69□□□□□ -1.5
CLIP1-217ENST00000543205 LCE3BQ5TA77 95 aa5.69□□□□□ -1.5
CLIP1-217ENST00000543205 LRCH2Q5VUJ6 765 aa5.69□□□□□ -1.5
CLIP1-217ENST00000543205 NECAB2Q7Z6G3 386 aa5.69□□□□□ -1.5
CLIP1-217ENST00000543205 SLFN12Q8IYM2 578 aa5.69□□□□□ -1.5
CLIP1-217ENST00000543205 TCEAL8Q8IYN2 117 aa5.69□□□□□ -1.5
CLIP1-217ENST00000543205 ELOA3Q8NG57 546 aa5.69□□□□□ -1.5
CLIP1-217ENST00000543205 DIS3LQ8TF46 1054 aaKnown RBP5.69□□□□□ -1.5
CLIP1-217ENST00000543205 SEPT1Q8WYJ6 367 aa5.69□□□□□ -1.5
CLIP1-217ENST00000543205 NINJ1Q92982 152 aa5.69□□□□□ -1.5
CLIP1-217ENST00000543205 FERMT2Q96AC1 680 aa5.69□□□□□ -1.5
CLIP1-217ENST00000543205 CCDC74AQ96AQ1 378 aa5.69□□□□□ -1.5
CLIP1-217ENST00000543205 LENG9Q96B70 501 aa5.69□□□□□ -1.5
CLIP1-217ENST00000543205 PAWRQ96IZ0 340 aaKnown RBP5.69□□□□□ -1.5
CLIP1-217ENST00000543205 FAM20AQ96MK3 541 aa5.69□□□□□ -1.5
CLIP1-217ENST00000543205 RIT2Q99578 217 aa5.69□□□□□ -1.5
CLIP1-217ENST00000543205 TEKT3Q9BXF9 490 aa5.69□□□□□ -1.5
CLIP1-217ENST00000543205 LRRC27Q9C0I9 530 aa5.69□□□□□ -1.5
CLIP1-217ENST00000543205 SENP6Q9GZR1 1112 aaPredicted RBP5.69□□□□□ -1.5
CLIP1-217ENST00000543205 TNKS2Q9H2K2 1166 aa5.69□□□□□ -1.5
CLIP1-217ENST00000543205 ZSCAN16Q9H4T2 348 aaPredicted RBP5.69□□□□□ -1.5
CLIP1-217ENST00000543205 BCAS3Q9H6U6 928 aa5.69□□□□□ -1.5
CLIP1-217ENST00000543205 NGRNQ9NPE2 291 aaKnown RBP5.69□□□□□ -1.5
CLIP1-217ENST00000543205 MTMR6Q9Y217 621 aa5.69□□□□□ -1.5
CLIP1-217ENST00000543205 SAMM50Q9Y512 469 aa5.69□□□□□ -1.5
CLIP1-217ENST00000543205 LRRC37A2A6NM11 1700 aa5.69□□□□□ -1.5
CLIP1-217ENST00000543205 A0A1W2PQ45 241 aaPredicted RBP5.69□□□□□ -1.5
CLIP1-217ENST00000543205 A0A1W2PQY0 241 aa5.69□□□□□ -1.5
CLIP1-217ENST00000543205 J3QW42 95 aa5.69□□□□□ -1.5
CLIP1-217ENST00000543205 CABYRO75952 493 aa5.69□□□□□ -1.5
CLIP1-217ENST00000543205 PGRP06401 933 aa5.69□□□□□ -1.5
CLIP1-217ENST00000543205 CPB1P15086 417 aa5.69□□□□□ -1.5
CLIP1-217ENST00000543205 GBP2P32456 591 aaPredicted RBP5.69□□□□□ -1.5
CLIP1-217ENST00000543205 ORC2Q13416 577 aaPredicted RBP5.69□□□□□ -1.5
CLIP1-217ENST00000543205 HSDL1Q3SXM5 330 aa5.69□□□□□ -1.5
CLIP1-217ENST00000543205 C1QTNF12Q5T7M4 302 aa5.69□□□□□ -1.5
CLIP1-217ENST00000543205 FAM102BQ5T8I3 360 aa5.69□□□□□ -1.5
CLIP1-217ENST00000543205 UTP14CQ5TAP6 766 aaKnown RBP5.69□□□□□ -1.5
CLIP1-217ENST00000543205 MIS18BP1Q6P0N0 1132 aa5.69□□□□□ -1.5
CLIP1-217ENST00000543205 CXCL17Q6UXB2 119 aa5.69□□□□□ -1.5
CLIP1-217ENST00000543205 FAM35AQ86V20 835 aa5.69□□□□□ -1.5
CLIP1-217ENST00000543205 Q8N3U1 123 aa5.69□□□□□ -1.5
CLIP1-217ENST00000543205 GALNT6Q8NCL4 622 aa5.69□□□□□ -1.5
CLIP1-217ENST00000543205 SLC17A8Q8NDX2 589 aa5.69□□□□□ -1.5
CLIP1-217ENST00000543205 ATL2Q8NHH9 583 aa5.69□□□□□ -1.5
CLIP1-217ENST00000543205 ETNPPLQ8TBG4 499 aa5.69□□□□□ -1.5
CLIP1-217ENST00000543205 SLC5A5Q92911 643 aa5.69□□□□□ -1.5
CLIP1-217ENST00000543205 GJA10Q969M2 543 aa5.69□□□□□ -1.5
CLIP1-217ENST00000543205 GLT1D1Q96MS3 346 aa5.69□□□□□ -1.5
CLIP1-217ENST00000543205 GPR20Q99678 358 aa5.69□□□□□ -1.5
CLIP1-217ENST00000543205 MTG1Q9BT17 334 aaPredicted RBP5.69□□□□□ -1.5
CLIP1-217ENST00000543205 RSRP1Q9BUV0 290 aa5.69□□□□□ -1.5
CLIP1-217ENST00000543205 AZI2Q9H6S1 392 aa5.69□□□□□ -1.5
CLIP1-217ENST00000543205 NPHS2Q9NP85 383 aa5.69□□□□□ -1.5
CLIP1-217ENST00000543205 STARD7Q9NQZ5 370 aa5.69□□□□□ -1.5
CLIP1-217ENST00000543205 A0A0C4DFX4 3053 aa5.68□□□□□ -1.5
CLIP1-217ENST00000543205 TMEM238LA0A1B0GVL6 79 aa5.68□□□□□ -1.5
CLIP1-217ENST00000543205 DHX15O43143 795 aaKnown RBP5.68□□□□□ -1.5
CLIP1-217ENST00000543205 CHMP2AO43633 222 aa5.68□□□□□ -1.5
CLIP1-217ENST00000543205 PSMD10O75832 226 aa5.68□□□□□ -1.5
CLIP1-217ENST00000543205 CELA2BP08218 269 aaPredicted RBP5.68□□□□□ -1.5
CLIP1-217ENST00000543205 OR52Z1P0C646 297 aa5.68□□□□□ -1.5
CLIP1-217ENST00000543205 ZSCAN22P10073 491 aaPredicted RBP5.68□□□□□ -1.5
CLIP1-217ENST00000543205 EPXP11678 715 aa5.68□□□□□ -1.5
CLIP1-217ENST00000543205 EDN3P14138 238 aa5.68□□□□□ -1.5
CLIP1-217ENST00000543205 TCF7P36402 384 aaPredicted RBP5.68□□□□□ -1.5
CLIP1-217ENST00000543205 TXKP42681 527 aa5.68□□□□□ -1.5
CLIP1-217ENST00000543205 TOB1P50616 345 aaPredicted RBP5.68□□□□□ -1.5
CLIP1-217ENST00000543205 JAK3P52333 1124 aa5.68□□□□□ -1.5
CLIP1-217ENST00000543205 ACTR2P61160 394 aa5.68□□□□□ -1.5
CLIP1-217ENST00000543205 PURAQ00577 322 aaKnown RBP5.68□□□□□ -1.5
CLIP1-217ENST00000543205 RESTQ13127 1097 aa5.68□□□□□ -1.5
CLIP1-217ENST00000543205 SETDB1Q15047 1291 aa5.68□□□□□ -1.5
CLIP1-217ENST00000543205 TOMM20Q15388 145 aa5.68□□□□□ -1.5
CLIP1-217ENST00000543205 CC2D1AQ6P1N0 951 aaPredicted RBP5.68□□□□□ -1.5
CLIP1-217ENST00000543205 LYPD4Q6UWN0 246 aa5.68□□□□□ -1.5
CLIP1-217ENST00000543205 C1orf229Q6ZS94 237 aaPredicted RBP5.68□□□□□ -1.5
CLIP1-217ENST00000543205 SMAP1Q8IYB5 467 aaPredicted RBP5.68□□□□□ -1.5
CLIP1-217ENST00000543205 ANKRD42Q8N9B4 389 aa5.68□□□□□ -1.5
CLIP1-217ENST00000543205 EDARADDQ8WWZ3 215 aa5.68□□□□□ -1.5
CLIP1-217ENST00000543205 HAS1Q92839 578 aa5.68□□□□□ -1.5
CLIP1-217ENST00000543205 GLG1Q92896 1179 aa5.68□□□□□ -1.5
CLIP1-217ENST00000543205 KATNAL1Q9BW62 490 aa5.68□□□□□ -1.5
CLIP1-217ENST00000543205 RSPH9Q9H1X1 276 aaPredicted RBP5.68□□□□□ -1.5
CLIP1-217ENST00000543205 KCNMB3Q9NPA1 279 aa5.68□□□□□ -1.5
CLIP1-217ENST00000543205 SALL4Q9UJQ4 1053 aa5.68□□□□□ -1.5
CLIP1-217ENST00000543205 PCDHA12Q9UN75 941 aa5.68□□□□□ -1.5
CLIP1-217ENST00000543205 CEP131Q9UPN4 1083 aa5.68□□□□□ -1.5
CLIP1-217ENST00000543205 PCDHB6Q9Y5E3 794 aa5.68□□□□□ -1.5
CLIP1-217ENST00000543205 PCDHA10Q9Y5I2 948 aa5.68□□□□□ -1.5
CLIP1-217ENST00000543205 KIAA0100Q14667 2235 aaKnown RBP5.68□□□□□ -1.5
CLIP1-217ENST00000543205 ELP1O95163 1332 aa5.68□□□□□ -1.5
CLIP1-217ENST00000543205 KIAA1217Q5T5P2 1943 aa5.68□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms