RNA–Protein interactions for RNA: ENST00000541259.1

DDX55-208, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 460 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-208ENST00000541259 FBXL18Q96ME1 805 aa10.17□□□□□ -0.78
DDX55-208ENST00000541259 ADPGKQ9BRR6 497 aa10.17□□□□□ -0.78
DDX55-208ENST00000541259 HTATIP2Q9BUP3 242 aa10.17□□□□□ -0.78
DDX55-208ENST00000541259 APOL6Q9BWW8 343 aa10.17□□□□□ -0.78
DDX55-208ENST00000541259 NXF3Q9H4D5 531 aaKnown RBP10.17□□□□□ -0.78
DDX55-208ENST00000541259 SNTG2Q9NY99 539 aa10.17□□□□□ -0.78
DDX55-208ENST00000541259 ZMYND8Q9ULU4 1186 aaPredicted RBP10.17□□□□□ -0.78
DDX55-208ENST00000541259 MEIS3P2A8K0S8 358 aa10.16□□□□□ -0.78
DDX55-208ENST00000541259 KCNJ18B7U540 433 aa10.16□□□□□ -0.78
DDX55-208ENST00000541259 GOLGA6L19H0YKK7 550 aa10.16□□□□□ -0.78
DDX55-208ENST00000541259 AP5Z1O43299 807 aa10.16□□□□□ -0.78
DDX55-208ENST00000541259 PARNO95453 639 aaKnown RBP10.16□□□□□ -0.78
DDX55-208ENST00000541259 LDHAP00338 332 aaKnown RBP10.16□□□□□ -0.78
DDX55-208ENST00000541259 AKAP5P24588 427 aa10.16□□□□□ -0.78
DDX55-208ENST00000541259 PSMC2P35998 433 aaKnown RBP10.16□□□□□ -0.78
DDX55-208ENST00000541259 DLG4P78352 724 aa10.16□□□□□ -0.78
DDX55-208ENST00000541259 CYP24A1Q07973 514 aa10.16□□□□□ -0.78
DDX55-208ENST00000541259 KCNJ12Q14500 433 aa10.16□□□□□ -0.78
DDX55-208ENST00000541259 ENOX2Q16206 610 aaKnown RBP10.16□□□□□ -0.78
DDX55-208ENST00000541259 DCAF4L1Q3SXM0 396 aa10.16□□□□□ -0.78
DDX55-208ENST00000541259 CCDC40Q4G0X9 1142 aa10.16□□□□□ -0.78
DDX55-208ENST00000541259 TCP11X2Q5H9J9 407 aa10.16□□□□□ -0.78
DDX55-208ENST00000541259 C16orf59Q7L2K0 433 aa10.16□□□□□ -0.78
DDX55-208ENST00000541259 APTXQ7Z2E3 356 aaKnown RBP10.16□□□□□ -0.78
DDX55-208ENST00000541259 TMEM199Q8N511 208 aa10.16□□□□□ -0.78
DDX55-208ENST00000541259 SEPT8Q92599 483 aa10.16□□□□□ -0.78
DDX55-208ENST00000541259 LPPQ93052 612 aa10.16□□□□□ -0.78
DDX55-208ENST00000541259 CCDC51Q96ER9 411 aa10.16□□□□□ -0.78
DDX55-208ENST00000541259 MFSD14AQ96MC6 490 aa10.16□□□□□ -0.78
DDX55-208ENST00000541259 HS3ST6Q96QI5 342 aa10.16□□□□□ -0.78
DDX55-208ENST00000541259 POP1Q99575 1024 aaKnown RBP10.16□□□□□ -0.78
DDX55-208ENST00000541259 TRIM6Q9C030 488 aaPredicted RBP10.16□□□□□ -0.78
DDX55-208ENST00000541259 RGS18Q9NS28 235 aa10.16□□□□□ -0.78
DDX55-208ENST00000541259 FAM105AQ9NUU6 356 aa10.16□□□□□ -0.78
DDX55-208ENST00000541259 RNF19AQ9NV58 838 aa10.16□□□□□ -0.78
DDX55-208ENST00000541259 PRKAG2Q9UGJ0 569 aa10.16□□□□□ -0.78
DDX55-208ENST00000541259 CPSF3Q9UKF6 684 aaKnown RBP10.16□□□□□ -0.78
DDX55-208ENST00000541259 FRMD4BQ9Y2L6 1034 aa10.16□□□□□ -0.78
DDX55-208ENST00000541259 IPPQ9Y573 584 aa10.16□□□□□ -0.78
DDX55-208ENST00000541259 PCDHB2Q9Y5E7 798 aa10.16□□□□□ -0.78
DDX55-208ENST00000541259 A0A0U1RQF3 1178 aa10.15□□□□□ -0.78
DDX55-208ENST00000541259 LOC101059915A0A1B0GWI6 518 aaPredicted RBP10.15□□□□□ -0.78
DDX55-208ENST00000541259 FSD2A1L4K1 749 aa10.15□□□□□ -0.78
DDX55-208ENST00000541259 ZNF233A6NK53 670 aa10.15□□□□□ -0.78
DDX55-208ENST00000541259 LACTBL1A8MY62 500 aa10.15□□□□□ -0.78
DDX55-208ENST00000541259 C9IYK1 514 aa10.15□□□□□ -0.78
DDX55-208ENST00000541259 ARHGAP33O14559 1287 aa10.15□□□□□ -0.78
DDX55-208ENST00000541259 KIAA0391O15091 583 aaKnown RBP10.15□□□□□ -0.78
DDX55-208ENST00000541259 SLC16A3O15427 465 aaKnown RBP10.15□□□□□ -0.78
DDX55-208ENST00000541259 FGFR1OPO95684 399 aaKnown RBP10.15□□□□□ -0.78
DDX55-208ENST00000541259 CXCL8P10145 99 aa10.15□□□□□ -0.78
DDX55-208ENST00000541259 EPB41P11171 864 aaKnown RBP10.15□□□□□ -0.78
DDX55-208ENST00000541259 ATF7P17544 494 aaPredicted RBP10.15□□□□□ -0.78
DDX55-208ENST00000541259 COL9A1P20849 921 aa10.15□□□□□ -0.78
DDX55-208ENST00000541259 CDK11BP21127 795 aaKnown RBP10.15□□□□□ -0.78
DDX55-208ENST00000541259 RFC2P35250 354 aa10.15□□□□□ -0.78
DDX55-208ENST00000541259 PBX2P40425 430 aa10.15□□□□□ -0.78
DDX55-208ENST00000541259 GRM5P41594 1212 aa10.15□□□□□ -0.78
DDX55-208ENST00000541259 MTIF2P46199 727 aaKnown RBP10.15□□□□□ -0.78
DDX55-208ENST00000541259 EPHB4P54760 987 aa10.15□□□□□ -0.78
DDX55-208ENST00000541259 MARSP56192 900 aaKnown RBP10.15□□□□□ -0.78
DDX55-208ENST00000541259 SPAG1Q07617 926 aa10.15□□□□□ -0.78
DDX55-208ENST00000541259 KRT31Q15323 416 aa10.15□□□□□ -0.78
DDX55-208ENST00000541259 SLC10A6Q3KNW5 377 aa10.15□□□□□ -0.78
DDX55-208ENST00000541259 C1orf220Q5T0J3 134 aa10.15□□□□□ -0.78
DDX55-208ENST00000541259 LMBRD2Q68DH5 695 aaPredicted RBP10.15□□□□□ -0.78
DDX55-208ENST00000541259 CNKSR3Q6P9H4 555 aa10.15□□□□□ -0.78
DDX55-208ENST00000541259 FRMD5Q7Z6J6 570 aa10.15□□□□□ -0.78
DDX55-208ENST00000541259 MRPL10Q7Z7H8 261 aaKnown RBP10.15□□□□□ -0.78
DDX55-208ENST00000541259 BRSK2Q8IWQ3 736 aa10.15□□□□□ -0.78
DDX55-208ENST00000541259 TRIM59Q8IWR1 403 aa10.15□□□□□ -0.78
DDX55-208ENST00000541259 ZNF687Q8N1G0 1237 aa10.15□□□□□ -0.78
DDX55-208ENST00000541259 TMEM130Q8N3G9 435 aa10.15□□□□□ -0.78
DDX55-208ENST00000541259 APBB2Q92870 758 aa10.15□□□□□ -0.78
DDX55-208ENST00000541259 CCDC127Q96BQ5 260 aa10.15□□□□□ -0.78
DDX55-208ENST00000541259 MKNK1Q9BUB5 465 aa10.15□□□□□ -0.78
DDX55-208ENST00000541259 FTHL17Q9BXU8 183 aa10.15□□□□□ -0.78
DDX55-208ENST00000541259 PDE11AQ9HCR9 933 aa10.15□□□□□ -0.78
DDX55-208ENST00000541259 TOPORSQ9NS56 1045 aaPredicted RBP10.15□□□□□ -0.78
DDX55-208ENST00000541259 TAB2Q9NYJ8 693 aa10.15□□□□□ -0.78
DDX55-208ENST00000541259 KLK14Q9P0G3 267 aa10.15□□□□□ -0.78
DDX55-208ENST00000541259 PARP2Q9UGN5 583 aa10.15□□□□□ -0.78
DDX55-208ENST00000541259 LIMA1Q9UHB6 759 aaKnown RBP10.15□□□□□ -0.78
DDX55-208ENST00000541259 SCN1AP35498 2009 aa10.15□□□□□ -0.78
DDX55-208ENST00000541259 PTPRJQ12913 1337 aa10.14□□□□□ -0.79
DDX55-208ENST00000541259 GOLGA6L3A6NEY3 463 aa10.14□□□□□ -0.79
DDX55-208ENST00000541259 LRRIQ3A6PVS8 624 aaPredicted RBP10.14□□□□□ -0.79
DDX55-208ENST00000541259 MAPK13O15264 365 aa10.14□□□□□ -0.79
DDX55-208ENST00000541259 ZNF623O75123 536 aa10.14□□□□□ -0.79
DDX55-208ENST00000541259 GNA14O95837 355 aa10.14□□□□□ -0.79
DDX55-208ENST00000541259 CLTAP09496 248 aa10.14□□□□□ -0.79
DDX55-208ENST00000541259 TRIM49P0CI25 452 aa10.14□□□□□ -0.79
DDX55-208ENST00000541259 TRIM49CP0CI26 452 aa10.14□□□□□ -0.79
DDX55-208ENST00000541259 ITGA4P13612 1032 aa10.14□□□□□ -0.79
DDX55-208ENST00000541259 EEF1GP26641 437 aaKnown RBP10.14□□□□□ -0.79
DDX55-208ENST00000541259 AFF1P51825 1210 aaKnown RBP10.14□□□□□ -0.79
DDX55-208ENST00000541259 COPB1P53618 953 aaKnown RBP10.14□□□□□ -0.79
DDX55-208ENST00000541259 FAM189BP81408 668 aa10.14□□□□□ -0.79
DDX55-208ENST00000541259 FANCCQ00597 558 aa10.14□□□□□ -0.79
DDX55-208ENST00000541259 BFSP1Q12934 665 aa10.14□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms