RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-222ENST00000541204 RASAL2Q9UJF2 1139 aa13.43□□□□□ -0.26
RNF4-222ENST00000541204 DLATP10515 647 aaKnown RBP13.42□□□□□ -0.26
RNF4-222ENST00000541204 CNGA1P29973 690 aa13.42□□□□□ -0.26
RNF4-222ENST00000541204 SP2Q02086 613 aa13.42□□□□□ -0.26
RNF4-222ENST00000541204 SNRNP35Q16560 246 aaKnown RBP13.42□□□□□ -0.26
RNF4-222ENST00000541204 MTERF2Q49AM1 385 aa13.42□□□□□ -0.26
RNF4-222ENST00000541204 CATSPERGQ6ZRH7 1159 aa13.42□□□□□ -0.26
RNF4-222ENST00000541204 SEPT14Q6ZU15 432 aa13.42□□□□□ -0.26
RNF4-222ENST00000541204 FUKQ8N0W3 1084 aa13.42□□□□□ -0.26
RNF4-222ENST00000541204 PPM1KQ8N3J5 372 aa13.42□□□□□ -0.26
RNF4-222ENST00000541204 CCT6BQ92526 530 aa13.42□□□□□ -0.26
RNF4-222ENST00000541204 ADAM7Q9H2U9 754 aa13.42□□□□□ -0.26
RNF4-222ENST00000541204 ACAD9Q9H845 621 aa13.42□□□□□ -0.26
RNF4-222ENST00000541204 SYNGAP1Q96PV0 1343 aa13.42□□□□□ -0.26
RNF4-222ENST00000541204 SPDYE16A6NNV3 312 aaPredicted RBP13.42□□□□□ -0.26
RNF4-222ENST00000541204 ATMINO43313 823 aaPredicted RBP13.42□□□□□ -0.26
RNF4-222ENST00000541204 FGFR4P22455 802 aa13.42□□□□□ -0.26
RNF4-222ENST00000541204 MXI1P50539 228 aa13.42□□□□□ -0.26
RNF4-222ENST00000541204 ACTR2P61160 394 aa13.42□□□□□ -0.26
RNF4-222ENST00000541204 CETN1Q12798 172 aa13.42□□□□□ -0.26
RNF4-222ENST00000541204 MESDQ14696 234 aa13.42□□□□□ -0.26
RNF4-222ENST00000541204 TREML2Q5T2D2 321 aa13.42□□□□□ -0.26
RNF4-222ENST00000541204 CYB5D1Q6P9G0 228 aa13.42□□□□□ -0.26
RNF4-222ENST00000541204 RPUSD2Q8IZ73 545 aaKnown RBP13.42□□□□□ -0.26
RNF4-222ENST00000541204 UBL4BQ8N7F7 174 aa13.42□□□□□ -0.26
RNF4-222ENST00000541204 ZNF526Q8TF50 670 aaPredicted RBP13.42□□□□□ -0.26
RNF4-222ENST00000541204 CENPTQ96BT3 561 aa13.42□□□□□ -0.26
RNF4-222ENST00000541204 BICD1Q96G01 975 aa13.42□□□□□ -0.26
RNF4-222ENST00000541204 PGM2Q96G03 612 aa13.42□□□□□ -0.26
RNF4-222ENST00000541204 TMEM117Q9H0C3 514 aa13.42□□□□□ -0.26
RNF4-222ENST00000541204 CHUKO15111 745 aa13.41□□□□□ -0.26
RNF4-222ENST00000541204 RGS16O15492 202 aaPredicted RBP13.41□□□□□ -0.26
RNF4-222ENST00000541204 CHRNA3P32297 505 aa13.41□□□□□ -0.26
RNF4-222ENST00000541204 MMP13P45452 471 aa13.41□□□□□ -0.26
RNF4-222ENST00000541204 SLCO1A2P46721 670 aa13.41□□□□□ -0.26
RNF4-222ENST00000541204 DRG2P55039 364 aaKnown RBP13.41□□□□□ -0.26
RNF4-222ENST00000541204 PRKCEQ02156 737 aa13.41□□□□□ -0.26
RNF4-222ENST00000541204 CCDC137Q6PK04 289 aaKnown RBP13.41□□□□□ -0.26
RNF4-222ENST00000541204 EEPD1Q7L9B9 569 aa13.41□□□□□ -0.26
RNF4-222ENST00000541204 FMNL3Q8IVF7 1028 aa13.41□□□□□ -0.26
RNF4-222ENST00000541204 ANKRD35Q8N283 1001 aa13.41□□□□□ -0.26
RNF4-222ENST00000541204 EPS8L3Q8TE67 593 aaKnown RBP13.41□□□□□ -0.26
RNF4-222ENST00000541204 ATXN2LQ8WWM7 1075 aaKnown RBP13.41□□□□□ -0.26
RNF4-222ENST00000541204 POMGNT1Q8WZA1 660 aa13.41□□□□□ -0.26
RNF4-222ENST00000541204 GPRASP2Q96D09 838 aa13.41□□□□□ -0.26
RNF4-222ENST00000541204 HVCN1Q96D96 273 aa13.41□□□□□ -0.26
RNF4-222ENST00000541204 ZNF317Q96PQ6 595 aaPredicted RBP13.41□□□□□ -0.26
RNF4-222ENST00000541204 ZSWIM1Q9BR11 485 aa13.41□□□□□ -0.26
RNF4-222ENST00000541204 SLC9A2Q9UBY0 812 aa13.41□□□□□ -0.26
RNF4-222ENST00000541204 PTPN22Q9Y2R2 807 aa13.41□□□□□ -0.26
RNF4-222ENST00000541204 CD2APQ9Y5K6 639 aa13.41□□□□□ -0.26
RNF4-222ENST00000541204 PFASO15067 1338 aa13.41□□□□□ -0.26
RNF4-222ENST00000541204 ADGRA3Q8IWK6 1321 aa13.41□□□□□ -0.26
RNF4-222ENST00000541204 TCRBV7S2A1N4TA0A589 114 aa13.41□□□□□ -0.26
RNF4-222ENST00000541204 HNRNPDLO14979 420 aaKnown RBP13.41□□□□□ -0.26
RNF4-222ENST00000541204 DDNO94850 711 aaPredicted RBP13.41□□□□□ -0.26
RNF4-222ENST00000541204 COMTP21964 271 aa13.41□□□□□ -0.26
RNF4-222ENST00000541204 NCKAP1LP55160 1127 aa13.41□□□□□ -0.26
RNF4-222ENST00000541204 LACTB2Q53H82 288 aaPredicted RBP13.41□□□□□ -0.26
RNF4-222ENST00000541204 C11orf63Q6NUN7 778 aa13.41□□□□□ -0.26
RNF4-222ENST00000541204 OTUD6AQ7L8S5 288 aa13.41□□□□□ -0.26
RNF4-222ENST00000541204 CPNE8Q86YQ8 564 aa13.41□□□□□ -0.26
RNF4-222ENST00000541204 ANKEF1Q9NU02 776 aa13.41□□□□□ -0.26
RNF4-222ENST00000541204 GEMIN8Q9NWZ8 242 aaKnown RBP13.41□□□□□ -0.26
RNF4-222ENST00000541204 MIF4GDA9UHW6 222 aaKnown RBP13.4□□□□□ -0.26
RNF4-222ENST00000541204 C19orf81C9J6K1 198 aa13.4□□□□□ -0.26
RNF4-222ENST00000541204 CALCAP01258 141 aa13.4□□□□□ -0.26
RNF4-222ENST00000541204 PSAPP07602 524 aa13.4□□□□□ -0.26
RNF4-222ENST00000541204 FDX1P10109 184 aa13.4□□□□□ -0.26
RNF4-222ENST00000541204 CTNNA2P26232 953 aa13.4□□□□□ -0.26
RNF4-222ENST00000541204 HADHBP55084 474 aaKnown RBP13.4□□□□□ -0.26
RNF4-222ENST00000541204 GSCP56915 257 aaPredicted RBP13.4□□□□□ -0.26
RNF4-222ENST00000541204 GPC5P78333 572 aa13.4□□□□□ -0.26
RNF4-222ENST00000541204 ALCAMQ13740 583 aa13.4□□□□□ -0.26
RNF4-222ENST00000541204 VGLL4Q14135 290 aa13.4□□□□□ -0.26
RNF4-222ENST00000541204 CLUL1Q15846 466 aa13.4□□□□□ -0.26
RNF4-222ENST00000541204 LMBRD2Q68DH5 695 aaPredicted RBP13.4□□□□□ -0.26
RNF4-222ENST00000541204 PARP9Q8IXQ6 854 aa13.4□□□□□ -0.26
RNF4-222ENST00000541204 SEMA4DQ92854 862 aa13.4□□□□□ -0.26
RNF4-222ENST00000541204 ATP6V0A1Q93050 837 aa13.4□□□□□ -0.26
RNF4-222ENST00000541204 TMEM143Q96AN5 459 aa13.4□□□□□ -0.26
RNF4-222ENST00000541204 BTBD6Q96KE9 485 aa13.4□□□□□ -0.26
RNF4-222ENST00000541204 MYCBPQ99417 103 aaPredicted RBP13.4□□□□□ -0.26
RNF4-222ENST00000541204 PRMT1Q99873 361 aaKnown RBP13.4□□□□□ -0.26
RNF4-222ENST00000541204 SLTMQ9NWH9 1034 aaKnown RBP eCLIP13.4□□□□□ -0.26
RNF4-222ENST00000541204 MAPTP10636 758 aaKnown RBP13.4□□□□□ -0.26
RNF4-222ENST00000541204 PYGMP11217 842 aa13.4□□□□□ -0.26
RNF4-222ENST00000541204 MAP2K2P36507 400 aa13.4□□□□□ -0.26
RNF4-222ENST00000541204 PEX5P50542 639 aa13.4□□□□□ -0.26
RNF4-222ENST00000541204 MKRN4PQ13434 485 aaPredicted RBP13.4□□□□□ -0.26
RNF4-222ENST00000541204 CCDC197Q8NCU1 140 aa13.4□□□□□ -0.26
RNF4-222ENST00000541204 PCDHB18PQ96TA0 734 aa13.4□□□□□ -0.26
RNF4-222ENST00000541204 PCYOX1Q9UHG3 505 aa13.4□□□□□ -0.26
RNF4-222ENST00000541204 AFG3L2Q9Y4W6 797 aa13.4□□□□□ -0.26
RNF4-222ENST00000541204 PCDHA3Q9Y5H8 950 aa13.4□□□□□ -0.26
RNF4-222ENST00000541204 ADM5C9JUS6 153 aa13.39□□□□□ -0.27
RNF4-222ENST00000541204 SGPL1O95470 568 aa13.39□□□□□ -0.27
RNF4-222ENST00000541204 RDXP35241 583 aaKnown RBP13.39□□□□□ -0.27
RNF4-222ENST00000541204 KCNJ1P48048 391 aa13.39□□□□□ -0.27
RNF4-222ENST00000541204 LLGL1Q15334 1064 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms