RNA–Protein interactions for RNA: ENST00000540747.1

YBX3-209, Transcript of Y-box binding protein 3, humanhuman

TSL 5

Gene YBX3, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-209ENST00000540747 PIDD1Q9HB75 910 aa8.11□□□□□ -1.11
YBX3-209ENST00000540747 LTB4R2Q9NPC1 389 aa8.11□□□□□ -1.11
YBX3-209ENST00000540747 AVENQ9NQS1 362 aaPredicted RBP8.11□□□□□ -1.11
YBX3-209ENST00000540747 GJB4Q9NTQ9 266 aa8.11□□□□□ -1.11
YBX3-209ENST00000540747 ANKEF1Q9NU02 776 aa8.11□□□□□ -1.11
YBX3-209ENST00000540747 KCNH3Q9ULD8 1083 aa8.11□□□□□ -1.11
YBX3-209ENST00000540747 PCDHGA2Q9Y5H1 932 aa8.11□□□□□ -1.11
YBX3-209ENST00000540747 MIA3Q5JRA6 1907 aa8.11□□□□□ -1.11
YBX3-209ENST00000540747 COL4A2P08572 1712 aa8.1□□□□□ -1.11
YBX3-209ENST00000540747 CCDC194A0A1B0GVG4 234 aa8.1□□□□□ -1.11
YBX3-209ENST00000540747 TMEM189-UBE2V1I3L0A0 370 aa8.1□□□□□ -1.11
YBX3-209ENST00000540747 WNT7AO00755 349 aa8.1□□□□□ -1.11
YBX3-209ENST00000540747 CCNT1O60563 726 aaKnown RBP8.1□□□□□ -1.11
YBX3-209ENST00000540747 KINO60870 393 aaKnown RBP8.1□□□□□ -1.11
YBX3-209ENST00000540747 CTDNEP1O95476 244 aa8.1□□□□□ -1.11
YBX3-209ENST00000540747 EDN1P05305 212 aa8.1□□□□□ -1.11
YBX3-209ENST00000540747 C8AP07357 584 aa8.1□□□□□ -1.11
YBX3-209ENST00000540747 FGFR3P22607 806 aa8.1□□□□□ -1.11
YBX3-209ENST00000540747 RFX1P22670 979 aa8.1□□□□□ -1.11
YBX3-209ENST00000540747 IGFBP6P24592 240 aaPredicted RBP8.1□□□□□ -1.11
YBX3-209ENST00000540747 RPS9P46781 194 aaKnown RBP8.1□□□□□ -1.11
YBX3-209ENST00000540747 SNW1Q13573 536 aaKnown RBP8.1□□□□□ -1.11
YBX3-209ENST00000540747 PSMD5Q16401 504 aa8.1□□□□□ -1.11
YBX3-209ENST00000540747 RSPO4Q2I0M5 234 aaPredicted RBP8.1□□□□□ -1.11
YBX3-209ENST00000540747 SLC44A4Q53GD3 710 aa8.1□□□□□ -1.11
YBX3-209ENST00000540747 PIK3AP1Q6ZUJ8 805 aa8.1□□□□□ -1.11
YBX3-209ENST00000540747 RTL10Q7L3V2 364 aa8.1□□□□□ -1.11
YBX3-209ENST00000540747 TPH2Q8IWU9 490 aa8.1□□□□□ -1.11
YBX3-209ENST00000540747 SLFN12Q8IYM2 578 aa8.1□□□□□ -1.11
YBX3-209ENST00000540747 HACE1Q8IYU2 909 aa8.1□□□□□ -1.11
YBX3-209ENST00000540747 PRIMPOLQ96LW4 560 aa8.1□□□□□ -1.11
YBX3-209ENST00000540747 NAP1L4Q99733 375 aaKnown RBP8.1□□□□□ -1.11
YBX3-209ENST00000540747 BCO2Q9BYV7 579 aa8.1□□□□□ -1.11
YBX3-209ENST00000540747 CCDC113Q9H0I3 377 aa8.1□□□□□ -1.11
YBX3-209ENST00000540747 PDZD7Q9H5P4 517 aa8.1□□□□□ -1.11
YBX3-209ENST00000540747 KLK14Q9P0G3 267 aa8.1□□□□□ -1.11
YBX3-209ENST00000540747 DNMT3BQ9UBC3 853 aaKnown RBP8.1□□□□□ -1.11
YBX3-209ENST00000540747 MTRRQ9UBK8 725 aa8.1□□□□□ -1.11
YBX3-209ENST00000540747 CASTOR2A6NHX0 329 aa8.09□□□□□ -1.11
YBX3-209ENST00000540747 FAM170BA6NMN3 283 aa8.09□□□□□ -1.11
YBX3-209ENST00000540747 CPLX1O14810 134 aa8.09□□□□□ -1.11
YBX3-209ENST00000540747 CCL16O15467 120 aa8.09□□□□□ -1.11
YBX3-209ENST00000540747 XYLBO75191 536 aa8.09□□□□□ -1.11
YBX3-209ENST00000540747 TADA2AO75478 443 aa8.09□□□□□ -1.11
YBX3-209ENST00000540747 ECI2O75521 394 aa8.09□□□□□ -1.11
YBX3-209ENST00000540747 RECQL4O94761 1208 aa8.09□□□□□ -1.11
YBX3-209ENST00000540747 SPATA31C1P0DKV0 1188 aa8.09□□□□□ -1.11
YBX3-209ENST00000540747 XRCC6P12956 609 aaKnown RBP eCLIP8.09□□□□□ -1.11
YBX3-209ENST00000540747 FCARP24071 287 aa8.09□□□□□ -1.11
YBX3-209ENST00000540747 TARSP26639 723 aaKnown RBP8.09□□□□□ -1.11
YBX3-209ENST00000540747 RBM25P49756 843 aaKnown RBP8.09□□□□□ -1.11
YBX3-209ENST00000540747 PFKPQ01813 784 aa8.09□□□□□ -1.11
YBX3-209ENST00000540747 NCBP1Q09161 790 aaKnown RBP8.09□□□□□ -1.11
YBX3-209ENST00000540747 SCRN1Q12765 414 aa8.09□□□□□ -1.11
YBX3-209ENST00000540747 ELAVL2Q12926 359 aaKnown RBP8.09□□□□□ -1.11
YBX3-209ENST00000540747 SLC5A9Q2M3M2 681 aa8.09□□□□□ -1.11
YBX3-209ENST00000540747 UVSSAQ2YD98 709 aa8.09□□□□□ -1.11
YBX3-209ENST00000540747 PPM1LQ5SGD2 360 aa8.09□□□□□ -1.11
YBX3-209ENST00000540747 VARS2Q5ST30 1063 aaKnown RBP8.09□□□□□ -1.11
YBX3-209ENST00000540747 LIN9Q5TKA1 542 aa8.09□□□□□ -1.11
YBX3-209ENST00000540747 FAM171A1Q5VUB5 890 aa8.09□□□□□ -1.11
YBX3-209ENST00000540747 PDZRN4Q6ZMN7 1036 aaPredicted RBP8.09□□□□□ -1.11
YBX3-209ENST00000540747 MAMSTRQ6ZN01 415 aa8.09□□□□□ -1.11
YBX3-209ENST00000540747 SLC7A14Q8TBB6 771 aa8.09□□□□□ -1.11
YBX3-209ENST00000540747 HASPINQ8TF76 798 aa8.09□□□□□ -1.11
YBX3-209ENST00000540747 BSNDQ8WZ55 320 aa8.09□□□□□ -1.11
YBX3-209ENST00000540747 MTMR9Q96QG7 549 aa8.09□□□□□ -1.11
YBX3-209ENST00000540747 KXD1Q9BQD3 176 aa8.09□□□□□ -1.11
YBX3-209ENST00000540747 LARP6Q9BRS8 491 aaKnown RBP8.09□□□□□ -1.11
YBX3-209ENST00000540747 PLA2G2FQ9BZM2 168 aa8.09□□□□□ -1.11
YBX3-209ENST00000540747 TRIM6Q9C030 488 aaPredicted RBP8.09□□□□□ -1.11
YBX3-209ENST00000540747 POLR3FQ9H1D9 316 aaPredicted RBP8.09□□□□□ -1.11
YBX3-209ENST00000540747 SLKQ9H2G2 1235 aaPredicted RBP8.09□□□□□ -1.11
YBX3-209ENST00000540747 GPRC5CQ9NQ84 441 aa8.09□□□□□ -1.11
YBX3-209ENST00000540747 PRMT7Q9NVM4 692 aaPredicted RBP8.09□□□□□ -1.11
YBX3-209ENST00000540747 SPATA6Q9NWH7 488 aaPredicted RBP8.09□□□□□ -1.11
YBX3-209ENST00000540747 HCFC1R1Q9NWW0 138 aa8.09□□□□□ -1.11
YBX3-209ENST00000540747 ZSCAN32Q9NX65 697 aa8.09□□□□□ -1.11
YBX3-209ENST00000540747 SMG5Q9UPR3 1016 aaKnown RBP8.09□□□□□ -1.11
YBX3-209ENST00000540747 BACE2Q9Y5Z0 518 aa8.09□□□□□ -1.11
YBX3-209ENST00000540747 CYP46A1Q9Y6A2 500 aa8.09□□□□□ -1.11
YBX3-209ENST00000540747 ARHGEF37A1IGU5 675 aa8.08□□□□□ -1.12
YBX3-209ENST00000540747 NRG2O14511 850 aaPredicted RBP8.08□□□□□ -1.12
YBX3-209ENST00000540747 LAMTOR5O43504 91 aa8.08□□□□□ -1.12
YBX3-209ENST00000540747 TBC1D4O60343 1298 aa8.08□□□□□ -1.12
YBX3-209ENST00000540747 PFKFB2O60825 505 aa8.08□□□□□ -1.12
YBX3-209ENST00000540747 REC8O95072 547 aa8.08□□□□□ -1.12
YBX3-209ENST00000540747 FDPSP14324 419 aaKnown RBP8.08□□□□□ -1.12
YBX3-209ENST00000540747 CD72P21854 359 aa8.08□□□□□ -1.12
YBX3-209ENST00000540747 ATXN1P54253 815 aaKnown RBP8.08□□□□□ -1.12
YBX3-209ENST00000540747 CSTF1Q05048 431 aaKnown RBP8.08□□□□□ -1.12
YBX3-209ENST00000540747 STK3Q13188 491 aa8.08□□□□□ -1.12
YBX3-209ENST00000540747 NR5A1Q13285 461 aa8.08□□□□□ -1.12
YBX3-209ENST00000540747 UBXN2BQ14CS0 331 aa8.08□□□□□ -1.12
YBX3-209ENST00000540747 PABPC1LQ4VXU2 614 aaKnown RBP8.08□□□□□ -1.12
YBX3-209ENST00000540747 PRSS36Q5K4E3 855 aa8.08□□□□□ -1.12
YBX3-209ENST00000540747 AXDND1Q5T1B0 1012 aaPredicted RBP8.08□□□□□ -1.12
YBX3-209ENST00000540747 EEF1DP3Q658K8 133 aa8.08□□□□□ -1.12
YBX3-209ENST00000540747 PDXDC1Q6P996 788 aa8.08□□□□□ -1.12
YBX3-209ENST00000540747 CPLX2Q6PUV4 134 aaKnown RBP8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms