RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 DMTF1Q9Y222 760 aa10.05□□□□□ -0.8
CLIP1-214ENST00000540539 ARFGEF2Q9Y6D5 1785 aa10.05□□□□□ -0.8
CLIP1-214ENST00000540539 ARHGAP33O14559 1287 aa10.05□□□□□ -0.8
CLIP1-214ENST00000540539 CNOT3O75175 753 aaKnown RBP10.05□□□□□ -0.8
CLIP1-214ENST00000540539 CYP1A2P05177 515 aa10.05□□□□□ -0.8
CLIP1-214ENST00000540539 GLULP15104 373 aa10.05□□□□□ -0.8
CLIP1-214ENST00000540539 DDX5P17844 614 aaKnown RBP10.05□□□□□ -0.8
CLIP1-214ENST00000540539 ITGA6P23229 1130 aa10.05□□□□□ -0.8
CLIP1-214ENST00000540539 PTPREP23469 700 aa10.05□□□□□ -0.8
CLIP1-214ENST00000540539 HMGB2P26583 209 aaKnown RBP10.05□□□□□ -0.8
CLIP1-214ENST00000540539 SLCO1A2P46721 670 aa10.05□□□□□ -0.8
CLIP1-214ENST00000540539 RPL5P46777 297 aaKnown RBP10.05□□□□□ -0.8
CLIP1-214ENST00000540539 ENTPD1P49961 510 aa10.05□□□□□ -0.8
CLIP1-214ENST00000540539 AP3M2P53677 418 aa10.05□□□□□ -0.8
CLIP1-214ENST00000540539 NDUFA5Q16718 116 aa10.05□□□□□ -0.8
CLIP1-214ENST00000540539 PHKG1Q16816 387 aa10.05□□□□□ -0.8
CLIP1-214ENST00000540539 KIF6Q6ZMV9 814 aa10.05□□□□□ -0.8
CLIP1-214ENST00000540539 DEFB132Q7Z7B7 95 aa10.05□□□□□ -0.8
CLIP1-214ENST00000540539 CCDC125Q86Z20 511 aa10.05□□□□□ -0.8
CLIP1-214ENST00000540539 PLBD2Q8NHP8 589 aa10.05□□□□□ -0.8
CLIP1-214ENST00000540539 EPS8L3Q8TE67 593 aaKnown RBP10.05□□□□□ -0.8
CLIP1-214ENST00000540539 MORC4Q8TE76 937 aa10.05□□□□□ -0.8
CLIP1-214ENST00000540539 PPP4R1Q8TF05 950 aa10.05□□□□□ -0.8
CLIP1-214ENST00000540539 PTCD2Q8WV60 388 aaKnown RBP10.05□□□□□ -0.8
CLIP1-214ENST00000540539 ZBTB3Q9H5J0 574 aa10.05□□□□□ -0.8
CLIP1-214ENST00000540539 FKBP14Q9NWM8 211 aa10.05□□□□□ -0.8
CLIP1-214ENST00000540539 ARHGAP20Q9P2F6 1191 aa10.05□□□□□ -0.8
CLIP1-214ENST00000540539 RWDD2AQ9UIY3 292 aa10.05□□□□□ -0.8
CLIP1-214ENST00000540539 HPS5Q9UPZ3 1129 aa10.05□□□□□ -0.8
CLIP1-214ENST00000540539 CLEC11AQ9Y240 323 aa10.05□□□□□ -0.8
CLIP1-214ENST00000540539 HEMK1Q9Y5R4 338 aaPredicted RBP10.05□□□□□ -0.8
CLIP1-214ENST00000540539 TMEM120BA0PK00 339 aa10.04□□□□□ -0.8
CLIP1-214ENST00000540539 CDK2AP1O14519 115 aa10.04□□□□□ -0.8
CLIP1-214ENST00000540539 ZBED4O75132 1171 aa10.04□□□□□ -0.8
CLIP1-214ENST00000540539 RPS6KA4O75676 772 aa10.04□□□□□ -0.8
CLIP1-214ENST00000540539 S100BP04271 92 aaPredicted RBP10.04□□□□□ -0.8
CLIP1-214ENST00000540539 OCM2P0CE71 109 aa10.04□□□□□ -0.8
CLIP1-214ENST00000540539 OCMP0CE72 109 aaPredicted RBP10.04□□□□□ -0.8
CLIP1-214ENST00000540539 STT3AP46977 705 aa10.04□□□□□ -0.8
CLIP1-214ENST00000540539 GSSP48637 474 aa10.04□□□□□ -0.8
CLIP1-214ENST00000540539 RAB15P59190 212 aa10.04□□□□□ -0.8
CLIP1-214ENST00000540539 TNFAIP8L3Q5GJ75 292 aa10.04□□□□□ -0.8
CLIP1-214ENST00000540539 AGAP9Q5VTM2 703 aa10.04□□□□□ -0.8
CLIP1-214ENST00000540539 DENND2CQ68D51 928 aa10.04□□□□□ -0.8
CLIP1-214ENST00000540539 OR7G1Q8NGA0 311 aa10.04□□□□□ -0.8
CLIP1-214ENST00000540539 NKX2-3Q8TAU0 364 aa10.04□□□□□ -0.8
CLIP1-214ENST00000540539 CCDC110Q8TBZ0 833 aa10.04□□□□□ -0.8
CLIP1-214ENST00000540539 SCFD2Q8WU76 684 aa10.04□□□□□ -0.8
CLIP1-214ENST00000540539 CRAMP1Q96RY5 1269 aa10.04□□□□□ -0.8
CLIP1-214ENST00000540539 FMO2Q99518 471 aa10.04□□□□□ -0.8
CLIP1-214ENST00000540539 GPATCH1Q9BRR8 931 aaKnown RBP10.04□□□□□ -0.8
CLIP1-214ENST00000540539 DDX47Q9H0S4 455 aaKnown RBP10.04□□□□□ -0.8
CLIP1-214ENST00000540539 PABPC3Q9H361 631 aaKnown RBP10.04□□□□□ -0.8
CLIP1-214ENST00000540539 EHD1Q9H4M9 534 aa10.04□□□□□ -0.8
CLIP1-214ENST00000540539 SIAEQ9HAT2 523 aa10.04□□□□□ -0.8
CLIP1-214ENST00000540539 AS3MTQ9HBK9 375 aa10.04□□□□□ -0.8
CLIP1-214ENST00000540539 UVRAGQ9P2Y5 699 aa10.04□□□□□ -0.8
CLIP1-214ENST00000540539 ANGPTL2Q9UKU9 493 aa10.04□□□□□ -0.8
CLIP1-214ENST00000540539 RTCBQ9Y3I0 505 aaKnown RBP10.04□□□□□ -0.8
CLIP1-214ENST00000540539 ARIH1Q9Y4X5 557 aaPredicted RBP10.04□□□□□ -0.8
CLIP1-214ENST00000540539 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP10.04□□□□□ -0.8
CLIP1-214ENST00000540539 ZNF609O15014 1411 aa10.04□□□□□ -0.8
CLIP1-214ENST00000540539 NUP188Q5SRE5 1749 aa10.04□□□□□ -0.8
CLIP1-214ENST00000540539 MYH4Q9Y623 1939 aa10.04□□□□□ -0.8
CLIP1-214ENST00000540539 UBR3Q6ZT12 1888 aa10.04□□□□□ -0.8
CLIP1-214ENST00000540539 PXDNLA1KZ92 1463 aa10.04□□□□□ -0.8
CLIP1-214ENST00000540539 A0A087X0B3 334 aa10.04□□□□□ -0.8
CLIP1-214ENST00000540539 A0A0G2JLW4 131 aa10.04□□□□□ -0.8
CLIP1-214ENST00000540539 NDC80O14777 642 aa10.04□□□□□ -0.8
CLIP1-214ENST00000540539 PJA2O43164 708 aa10.04□□□□□ -0.8
CLIP1-214ENST00000540539 ADCY6O43306 1168 aa10.04□□□□□ -0.8
CLIP1-214ENST00000540539 PALMO75781 387 aa10.04□□□□□ -0.8
CLIP1-214ENST00000540539 GH1P01241 217 aa10.04□□□□□ -0.8
CLIP1-214ENST00000540539 PPP1R2P41236 205 aa10.04□□□□□ -0.8
CLIP1-214ENST00000540539 PAK1Q13153 545 aa10.04□□□□□ -0.8
CLIP1-214ENST00000540539 HNRNPDQ14103 355 aaKnown RBP10.04□□□□□ -0.8
CLIP1-214ENST00000540539 SEPT6Q14141 434 aa10.04□□□□□ -0.8
CLIP1-214ENST00000540539 C6orf118Q5T5N4 469 aa10.04□□□□□ -0.8
CLIP1-214ENST00000540539 UBAP2Q5T6F2 1119 aaKnown RBP10.04□□□□□ -0.8
CLIP1-214ENST00000540539 KRT40Q6A162 431 aa10.04□□□□□ -0.8
CLIP1-214ENST00000540539 PPP1R2P3Q6NXS1 205 aa10.04□□□□□ -0.8
CLIP1-214ENST00000540539 ELMSAN1Q6PJG2 1045 aa10.04□□□□□ -0.8
CLIP1-214ENST00000540539 CCDC81Q6ZN84 652 aa10.04□□□□□ -0.8
CLIP1-214ENST00000540539 DCDC5Q6ZRR9 648 aa10.04□□□□□ -0.8
CLIP1-214ENST00000540539 SMIM5Q71RC9 77 aa10.04□□□□□ -0.8
CLIP1-214ENST00000540539 U2AF1L4Q8WU68 220 aaKnown RBP10.04□□□□□ -0.8
CLIP1-214ENST00000540539 GSDMAQ96QA5 445 aa10.04□□□□□ -0.8
CLIP1-214ENST00000540539 HAUS7Q99871 368 aa10.04□□□□□ -0.8
CLIP1-214ENST00000540539 ZMYND12Q9H0C1 365 aa10.04□□□□□ -0.8
CLIP1-214ENST00000540539 GID8Q9NWU2 228 aa10.04□□□□□ -0.8
CLIP1-214ENST00000540539 KMOO15229 486 aa10.03□□□□□ -0.8
CLIP1-214ENST00000540539 CREB1P16220 341 aa10.03□□□□□ -0.8
CLIP1-214ENST00000540539 CDH3P22223 829 aa10.03□□□□□ -0.8
CLIP1-214ENST00000540539 EIF4A3P38919 411 aaKnown RBP10.03□□□□□ -0.8
CLIP1-214ENST00000540539 MAGEA1P43355 309 aa10.03□□□□□ -0.8
CLIP1-214ENST00000540539 MED21Q13503 144 aa10.03□□□□□ -0.8
CLIP1-214ENST00000540539 DCAF6Q58WW2 860 aa10.03□□□□□ -0.8
CLIP1-214ENST00000540539 FYB2Q5VWT5 728 aa10.03□□□□□ -0.8
CLIP1-214ENST00000540539 PDXDC1Q6P996 788 aa10.03□□□□□ -0.8
CLIP1-214ENST00000540539 AMIGO3Q86WK7 504 aa10.03□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms