RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 JAK3P52333 1124 aa18.13■□□□□ 0.49
USP28-208ENST00000540438 IFI35P80217 286 aaPredicted RBP18.13■□□□□ 0.49
USP28-208ENST00000540438 MKRN3Q13064 507 aaKnown RBP18.13■□□□□ 0.49
USP28-208ENST00000540438 SLC29A2Q14542 456 aa18.13■□□□□ 0.49
USP28-208ENST00000540438 EMC2Q15006 297 aa18.13■□□□□ 0.49
USP28-208ENST00000540438 TDRD10Q5VZ19 366 aaKnown RBP18.13■□□□□ 0.49
USP28-208ENST00000540438 MAP4K3Q8IVH8 894 aa18.13■□□□□ 0.49
USP28-208ENST00000540438 RASGEF1CQ8N431 466 aa18.13■□□□□ 0.49
USP28-208ENST00000540438 COPS5Q92905 334 aa18.13■□□□□ 0.49
USP28-208ENST00000540438 ADM5C9JUS6 153 aa18.12■□□□□ 0.49
USP28-208ENST00000540438 HLA-DRAP01903 254 aa18.12■□□□□ 0.49
USP28-208ENST00000540438 HSPA9P38646 679 aaKnown RBP18.12■□□□□ 0.49
USP28-208ENST00000540438 IGBP1P78318 339 aa18.12■□□□□ 0.49
USP28-208ENST00000540438 MSL3Q8N5Y2 521 aaKnown RBP18.12■□□□□ 0.49
USP28-208ENST00000540438 NEK9Q8TD19 979 aa18.12■□□□□ 0.49
USP28-208ENST00000540438 EPS8L3Q8TE67 593 aaKnown RBP18.12■□□□□ 0.49
USP28-208ENST00000540438 RNF25Q96BH1 459 aaPredicted RBP18.12■□□□□ 0.49
USP28-208ENST00000540438 CLMNQ96JQ2 1002 aa18.12■□□□□ 0.49
USP28-208ENST00000540438 CCDC114Q96M63 670 aa18.12■□□□□ 0.49
USP28-208ENST00000540438 DDX23Q9BUQ8 820 aaKnown RBP18.12■□□□□ 0.49
USP28-208ENST00000540438 R3HDM2Q9Y2K5 976 aaKnown RBP18.12■□□□□ 0.49
USP28-208ENST00000540438 NCANO14594 1321 aa18.12■□□□□ 0.49
USP28-208ENST00000540438 SPDYE16A6NNV3 312 aaPredicted RBP18.12■□□□□ 0.49
USP28-208ENST00000540438 PIK3R2O00459 728 aa18.12■□□□□ 0.49
USP28-208ENST00000540438 DDNO94850 711 aaPredicted RBP18.12■□□□□ 0.49
USP28-208ENST00000540438 STBD1O95210 358 aa18.12■□□□□ 0.49
USP28-208ENST00000540438 SCP2P22307 547 aa18.12■□□□□ 0.49
USP28-208ENST00000540438 MAPK4P31152 587 aa18.12■□□□□ 0.49
USP28-208ENST00000540438 HOXA7P31268 230 aaPredicted RBP18.12■□□□□ 0.49
USP28-208ENST00000540438 DSG3P32926 999 aa18.12■□□□□ 0.49
USP28-208ENST00000540438 GPD1LQ8N335 351 aa18.12■□□□□ 0.49
USP28-208ENST00000540438 CEP120Q8N960 986 aa18.12■□□□□ 0.49
USP28-208ENST00000540438 MTMR14Q8NCE2 650 aa18.12■□□□□ 0.49
USP28-208ENST00000540438 SHC3Q92529 594 aa18.12■□□□□ 0.49
USP28-208ENST00000540438 IFT74Q96LB3 600 aa18.12■□□□□ 0.49
USP28-208ENST00000540438 ERP44Q9BS26 406 aa18.12■□□□□ 0.49
USP28-208ENST00000540438 APOBEC3GQ9HC16 384 aaKnown RBP18.12■□□□□ 0.49
USP28-208ENST00000540438 PCDHB4Q9Y5E5 795 aa18.12■□□□□ 0.49
USP28-208ENST00000540438 CD2APQ9Y5K6 639 aa18.12■□□□□ 0.49
USP28-208ENST00000540438 A0A0A6YYK5 440 aaPredicted RBP18.12■□□□□ 0.49
USP28-208ENST00000540438 GOLGA6L10A0A0M3HER8 536 aa18.12■□□□□ 0.49
USP28-208ENST00000540438 H0YGN5 161 aa18.12■□□□□ 0.49
USP28-208ENST00000540438 K7ERI5 159 aa18.12■□□□□ 0.49
USP28-208ENST00000540438 CST3P01034 146 aaPredicted RBP18.12■□□□□ 0.49
USP28-208ENST00000540438 PSAPP07602 524 aa18.12■□□□□ 0.49
USP28-208ENST00000540438 POU5F1Q01860 360 aaKnown RBP18.12■□□□□ 0.49
USP28-208ENST00000540438 PPP1R7Q15435 360 aa18.12■□□□□ 0.49
USP28-208ENST00000540438 OTUD5Q96G74 571 aa18.12■□□□□ 0.49
USP28-208ENST00000540438 NFS1Q9Y697 457 aa18.12■□□□□ 0.49
USP28-208ENST00000540438 FAM169AQ9Y6X4 670 aa18.12■□□□□ 0.49
USP28-208ENST00000540438 EBAG9O00559 213 aa18.11■□□□□ 0.49
USP28-208ENST00000540438 WEE2P0C1S8 567 aa18.11■□□□□ 0.49
USP28-208ENST00000540438 TMEM132AQ24JP5 1023 aa18.11■□□□□ 0.49
USP28-208ENST00000540438 SEL1L2Q5TEA6 688 aa18.11■□□□□ 0.49
USP28-208ENST00000540438 ANKS1BQ7Z6G8 1248 aa18.11■□□□□ 0.49
USP28-208ENST00000540438 UBL4BQ8N7F7 174 aa18.11■□□□□ 0.49
USP28-208ENST00000540438 DEPTORQ8TB45 409 aa18.11■□□□□ 0.49
USP28-208ENST00000540438 ATP6V0A1Q93050 837 aa18.11■□□□□ 0.49
USP28-208ENST00000540438 TMEM8AQ9HCN3 771 aa18.11■□□□□ 0.49
USP28-208ENST00000540438 BTBD7Q9P203 1132 aa18.11■□□□□ 0.49
USP28-208ENST00000540438 GGT7Q9UJ14 662 aa18.11■□□□□ 0.49
USP28-208ENST00000540438 AGO2Q9UKV8 859 aaKnown RBP18.11■□□□□ 0.49
USP28-208ENST00000540438 PTENP60484 403 aa18.11■□□□□ 0.49
USP28-208ENST00000540438 MAP3K10Q02779 954 aa18.11■□□□□ 0.49
USP28-208ENST00000540438 QPCTQ16769 361 aa18.11■□□□□ 0.49
USP28-208ENST00000540438 THNSL1Q8IYQ7 743 aa18.11■□□□□ 0.49
USP28-208ENST00000540438 MSTO1Q9BUK6 570 aa18.11■□□□□ 0.49
USP28-208ENST00000540438 TEX13BQ9BXU2 312 aa18.11■□□□□ 0.49
USP28-208ENST00000540438 ATP6V0A4Q9HBG4 840 aa18.11■□□□□ 0.49
USP28-208ENST00000540438 TMBIM4Q9HC24 238 aa18.11■□□□□ 0.49
USP28-208ENST00000540438 C1orf112Q9NSG2 853 aa18.11■□□□□ 0.49
USP28-208ENST00000540438 RBBP6Q7Z6E9 1792 aaKnown RBP18.11■□□□□ 0.49
USP28-208ENST00000540438 KRT10P13645 584 aa18.1■□□□□ 0.49
USP28-208ENST00000540438 GLRA2P23416 452 aa18.1■□□□□ 0.49
USP28-208ENST00000540438 PEX5P50542 639 aa18.1■□□□□ 0.49
USP28-208ENST00000540438 LRRC14Q15048 493 aa18.1■□□□□ 0.49
USP28-208ENST00000540438 SYCP2LQ5T4T6 812 aa18.1■□□□□ 0.49
USP28-208ENST00000540438 MMS22LQ6ZRQ5 1243 aa18.1■□□□□ 0.49
USP28-208ENST00000540438 AZI2Q9H6S1 392 aa18.1■□□□□ 0.49
USP28-208ENST00000540438 ACAD9Q9H845 621 aa18.1■□□□□ 0.49
USP28-208ENST00000540438 RBAKQ9NYW8 714 aaPredicted RBP18.1■□□□□ 0.49
USP28-208ENST00000540438 TBK1Q9UHD2 729 aa18.1■□□□□ 0.49
USP28-208ENST00000540438 SYNPO2Q9UMS6 1093 aa18.1■□□□□ 0.49
USP28-208ENST00000540438 EXOC7Q9UPT5 735 aa18.1■□□□□ 0.49
USP28-208ENST00000540438 UBE4BO95155 1302 aa18.1■□□□□ 0.49
USP28-208ENST00000540438 CCDC188H7C350 402 aa18.1■□□□□ 0.49
USP28-208ENST00000540438 CREB1P16220 341 aa18.1■□□□□ 0.49
USP28-208ENST00000540438 MTFR1LQ9H019 292 aa18.1■□□□□ 0.49
USP28-208ENST00000540438 CARD9Q9H257 536 aa18.1■□□□□ 0.49
USP28-208ENST00000540438 ELP3Q9H9T3 547 aa18.1■□□□□ 0.49
USP28-208ENST00000540438 ZNF302Q9NR11 478 aa18.1■□□□□ 0.49
USP28-208ENST00000540438 CTNNAL1Q9UBT7 734 aa18.1■□□□□ 0.49
USP28-208ENST00000540438 ASIC3Q9UHC3 531 aa18.1■□□□□ 0.49
USP28-208ENST00000540438 AFG3L2Q9Y4W6 797 aa18.1■□□□□ 0.49
USP28-208ENST00000540438 KIAA1217Q5T5P2 1943 aa18.1■□□□□ 0.49
USP28-208ENST00000540438 KIAA0391O15091 583 aaKnown RBP18.09■□□□□ 0.49
USP28-208ENST00000540438 GRIN3BO60391 1043 aa18.09■□□□□ 0.49
USP28-208ENST00000540438 CDR2Q01850 454 aa18.09■□□□□ 0.49
USP28-208ENST00000540438 ADCY2Q08462 1091 aa18.09■□□□□ 0.49
USP28-208ENST00000540438 IFT88Q13099 833 aa18.09■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms