RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 JAM2P57087 298 aa11.53□□□□□ -0.56
CLIP1-213ENST00000540338 TTLL4Q14679 1199 aa11.53□□□□□ -0.56
CLIP1-213ENST00000540338 DNAJC24Q6P3W2 148 aa11.53□□□□□ -0.56
CLIP1-213ENST00000540338 SLC47A2Q86VL8 602 aa11.53□□□□□ -0.56
CLIP1-213ENST00000540338 DDX42Q86XP3 938 aaKnown RBP eCLIP11.53□□□□□ -0.56
CLIP1-213ENST00000540338 UHMK1Q8TAS1 419 aaKnown RBP11.53□□□□□ -0.56
CLIP1-213ENST00000540338 CAVIN3Q969G5 261 aa11.53□□□□□ -0.56
CLIP1-213ENST00000540338 KLRG1Q96E93 195 aa11.53□□□□□ -0.56
CLIP1-213ENST00000540338 ZIM3Q96PE6 472 aa11.53□□□□□ -0.56
CLIP1-213ENST00000540338 ST6GALNAC4Q9H4F1 302 aa11.53□□□□□ -0.56
CLIP1-213ENST00000540338 RPF1Q9H9Y2 349 aaKnown RBP11.53□□□□□ -0.56
CLIP1-213ENST00000540338 SIX2Q9NPC8 291 aa11.53□□□□□ -0.56
CLIP1-213ENST00000540338 PPANQ9NQ55 473 aaKnown RBP11.53□□□□□ -0.56
CLIP1-213ENST00000540338 E7EVH7 732 aa11.53□□□□□ -0.56
CLIP1-213ENST00000540338 CNTN2Q02246 1040 aa11.53□□□□□ -0.56
CLIP1-213ENST00000540338 MAPK7Q13164 816 aa11.53□□□□□ -0.56
CLIP1-213ENST00000540338 MXD4Q14582 209 aaPredicted RBP11.53□□□□□ -0.56
CLIP1-213ENST00000540338 DUOXA2Q1HG44 320 aa11.53□□□□□ -0.56
CLIP1-213ENST00000540338 ACAD10Q6JQN1 1059 aa11.53□□□□□ -0.56
CLIP1-213ENST00000540338 CCDC137Q6PK04 289 aaKnown RBP11.53□□□□□ -0.56
CLIP1-213ENST00000540338 C10orf67Q8IYJ2 551 aa11.53□□□□□ -0.56
CLIP1-213ENST00000540338 RPS6KC1Q96S38 1066 aa11.53□□□□□ -0.56
CLIP1-213ENST00000540338 NFASCO94856 1347 aa11.52□□□□□ -0.56
CLIP1-213ENST00000540338 ADRB2P07550 413 aa11.52□□□□□ -0.56
CLIP1-213ENST00000540338 SLMAPQ14BN4 828 aa11.52□□□□□ -0.56
CLIP1-213ENST00000540338 ZNF568Q3ZCX4 644 aa11.52□□□□□ -0.56
CLIP1-213ENST00000540338 ZNF394Q53GI3 561 aa11.52□□□□□ -0.56
CLIP1-213ENST00000540338 ZNF677Q86XU0 584 aa11.52□□□□□ -0.56
CLIP1-213ENST00000540338 ANKRD13AQ8IZ07 590 aa11.52□□□□□ -0.56
CLIP1-213ENST00000540338 TMEM35BQ8NCS4 154 aa11.52□□□□□ -0.56
CLIP1-213ENST00000540338 BBOF1Q8ND07 529 aa11.52□□□□□ -0.56
CLIP1-213ENST00000540338 PPFIA4O75335 1185 aa11.52□□□□□ -0.57
CLIP1-213ENST00000540338 TCF7P36402 384 aaPredicted RBP11.52□□□□□ -0.57
CLIP1-213ENST00000540338 NCOA4Q13772 614 aa11.52□□□□□ -0.57
CLIP1-213ENST00000540338 IER5Q5VY09 327 aa11.52□□□□□ -0.57
CLIP1-213ENST00000540338 TAOK1Q7L7X3 1001 aa11.52□□□□□ -0.57
CLIP1-213ENST00000540338 DPP9Q86TI2 863 aa11.52□□□□□ -0.57
CLIP1-213ENST00000540338 TRPM4Q8TD43 1214 aa11.52□□□□□ -0.57
CLIP1-213ENST00000540338 CPA5Q8WXQ8 436 aa11.52□□□□□ -0.57
CLIP1-213ENST00000540338 CELF4Q9BZC1 486 aaKnown RBP11.52□□□□□ -0.57
CLIP1-213ENST00000540338 ADARB2Q9NS39 739 aaKnown RBP11.52□□□□□ -0.57
CLIP1-213ENST00000540338 PRKCBP05771 671 aa11.52□□□□□ -0.57
CLIP1-213ENST00000540338 MYBL2P10244 700 aa11.52□□□□□ -0.57
CLIP1-213ENST00000540338 TXNP10599 105 aaKnown RBP11.52□□□□□ -0.57
CLIP1-213ENST00000540338 CCT5P48643 541 aa11.52□□□□□ -0.57
CLIP1-213ENST00000540338 AARSP49588 968 aaKnown RBP eCLIP11.52□□□□□ -0.57
CLIP1-213ENST00000540338 GPC3P51654 580 aa11.52□□□□□ -0.57
CLIP1-213ENST00000540338 HADHQ16836 314 aaKnown RBP11.52□□□□□ -0.57
CLIP1-213ENST00000540338 EPC2Q52LR7 807 aa11.52□□□□□ -0.57
CLIP1-213ENST00000540338 KAZNQ674X7 775 aa11.52□□□□□ -0.57
CLIP1-213ENST00000540338 KAT5Q92993 513 aa11.52□□□□□ -0.57
CLIP1-213ENST00000540338 ARHGEF26Q96DR7 871 aa11.52□□□□□ -0.57
CLIP1-213ENST00000540338 ZSWIM1Q9BR11 485 aa11.52□□□□□ -0.57
CLIP1-213ENST00000540338 TRIM51Q9BSJ1 452 aa11.52□□□□□ -0.57
CLIP1-213ENST00000540338 MAK16Q9BXY0 300 aaKnown RBP11.52□□□□□ -0.57
CLIP1-213ENST00000540338 SPATC1LQ9H0A9 340 aa11.52□□□□□ -0.57
CLIP1-213ENST00000540338 NSRP1Q9H0G5 558 aaKnown RBP11.52□□□□□ -0.57
CLIP1-213ENST00000540338 KCNK9Q9NPC2 374 aa11.52□□□□□ -0.57
CLIP1-213ENST00000540338 ZNF148Q9UQR1 794 aa11.52□□□□□ -0.57
CLIP1-213ENST00000540338 MYPNQ86TC9 1320 aa11.51□□□□□ -0.57
CLIP1-213ENST00000540338 PHF2O75151 1096 aa11.51□□□□□ -0.57
CLIP1-213ENST00000540338 KCNA3P22001 575 aa11.51□□□□□ -0.57
CLIP1-213ENST00000540338 LMNB2Q03252 620 aa11.51□□□□□ -0.57
CLIP1-213ENST00000540338 SCARA5Q6ZMJ2 495 aa11.51□□□□□ -0.57
CLIP1-213ENST00000540338 IPO4Q8TEX9 1081 aaKnown RBP11.51□□□□□ -0.57
CLIP1-213ENST00000540338 TATDN2Q93075 761 aa11.51□□□□□ -0.57
CLIP1-213ENST00000540338 NOVA2Q9UNW9 492 aaKnown RBP11.51□□□□□ -0.57
CLIP1-213ENST00000540338 MYH8P13535 1937 aa11.51□□□□□ -0.57
CLIP1-213ENST00000540338 ZSCAN5CA6NGD5 496 aaPredicted RBP11.51□□□□□ -0.57
CLIP1-213ENST00000540338 SPDYE16A6NNV3 312 aaPredicted RBP11.51□□□□□ -0.57
CLIP1-213ENST00000540338 SPATA31C2B4DYI2 1134 aa11.51□□□□□ -0.57
CLIP1-213ENST00000540338 KRT14P02533 472 aa11.51□□□□□ -0.57
CLIP1-213ENST00000540338 SLC1A1P43005 524 aa11.51□□□□□ -0.57
CLIP1-213ENST00000540338 ERICH1Q86X53 443 aa11.51□□□□□ -0.57
CLIP1-213ENST00000540338 ERO1BQ86YB8 467 aa11.51□□□□□ -0.57
CLIP1-213ENST00000540338 TRAF3IP1Q8TDR0 691 aaPredicted RBP11.51□□□□□ -0.57
CLIP1-213ENST00000540338 ZNF668Q96K58 619 aaPredicted RBP11.51□□□□□ -0.57
CLIP1-213ENST00000540338 ATP6V1G3Q96LB4 118 aa11.51□□□□□ -0.57
CLIP1-213ENST00000540338 TEPSINQ96N21 525 aa11.51□□□□□ -0.57
CLIP1-213ENST00000540338 GDF3Q9NR23 364 aa11.51□□□□□ -0.57
CLIP1-213ENST00000540338 TAS2R14Q9NYV8 317 aa11.51□□□□□ -0.57
CLIP1-213ENST00000540338 ASB14A6NK59 587 aa11.51□□□□□ -0.57
CLIP1-213ENST00000540338 MED7O43513 233 aa11.51□□□□□ -0.57
CLIP1-213ENST00000540338 TGFB3P10600 412 aa11.51□□□□□ -0.57
CLIP1-213ENST00000540338 ALDH5A1P51649 535 aaPredicted RBP11.51□□□□□ -0.57
CLIP1-213ENST00000540338 ZNF699Q32M78 642 aa11.51□□□□□ -0.57
CLIP1-213ENST00000540338 C11orf63Q6NUN7 778 aa11.51□□□□□ -0.57
CLIP1-213ENST00000540338 DHX38Q92620 1227 aaKnown RBP11.51□□□□□ -0.57
CLIP1-213ENST00000540338 TRIM6Q9C030 488 aaPredicted RBP11.51□□□□□ -0.57
CLIP1-213ENST00000540338 TLR3O15455 904 aaKnown RBP11.51□□□□□ -0.57
CLIP1-213ENST00000540338 CALB1P05937 261 aa11.51□□□□□ -0.57
CLIP1-213ENST00000540338 ITGA4P13612 1032 aa11.51□□□□□ -0.57
CLIP1-213ENST00000540338 NOP14P78316 857 aaKnown RBP11.51□□□□□ -0.57
CLIP1-213ENST00000540338 MAP3K10Q02779 954 aa11.51□□□□□ -0.57
CLIP1-213ENST00000540338 PDCLQ13371 301 aa11.51□□□□□ -0.57
CLIP1-213ENST00000540338 ZNF667Q5HYK9 610 aa11.51□□□□□ -0.57
CLIP1-213ENST00000540338 NOP9Q86U38 636 aaKnown RBP11.51□□□□□ -0.57
CLIP1-213ENST00000540338 RBBP8NLQ8NC74 664 aaPredicted RBP11.51□□□□□ -0.57
CLIP1-213ENST00000540338 ERP44Q9BS26 406 aa11.51□□□□□ -0.57
CLIP1-213ENST00000540338 SMARCAD1Q9H4L7 1026 aa11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms