RNA–Protein interactions for RNA: ENST00000540304.5

CLIP1-212, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5

Gene CLIP1, Length 2,554 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-212ENST00000540304 NEBLO76041 1014 aa10.39□□□□□ -0.75
CLIP1-212ENST00000540304 SEC31AO94979 1220 aaKnown RBP10.39□□□□□ -0.75
CLIP1-212ENST00000540304 LDHAP00338 332 aaKnown RBP10.39□□□□□ -0.75
CLIP1-212ENST00000540304 ZBTB48P10074 688 aaPredicted RBP10.39□□□□□ -0.75
CLIP1-212ENST00000540304 CLDN10P78369 228 aa10.39□□□□□ -0.75
CLIP1-212ENST00000540304 MXD4Q14582 209 aaPredicted RBP10.39□□□□□ -0.75
CLIP1-212ENST00000540304 PTPROQ16827 1216 aa10.39□□□□□ -0.75
CLIP1-212ENST00000540304 SPRYD7Q5W111 196 aa10.39□□□□□ -0.75
CLIP1-212ENST00000540304 ZNF467Q7Z7K2 595 aaPredicted RBP10.39□□□□□ -0.75
CLIP1-212ENST00000540304 CREG2Q8IUH2 290 aa10.39□□□□□ -0.75
CLIP1-212ENST00000540304 PPM1KQ8N3J5 372 aa10.39□□□□□ -0.75
CLIP1-212ENST00000540304 TAS1R2Q8TE23 839 aa10.39□□□□□ -0.75
CLIP1-212ENST00000540304 COG1Q8WTW3 980 aa10.39□□□□□ -0.75
CLIP1-212ENST00000540304 PARK7Q99497 189 aaKnown RBP10.39□□□□□ -0.75
CLIP1-212ENST00000540304 AGPAT1Q99943 283 aa10.39□□□□□ -0.75
CLIP1-212ENST00000540304 MSTO1Q9BUK6 570 aa10.39□□□□□ -0.75
CLIP1-212ENST00000540304 TARS2Q9BW92 718 aaKnown RBP10.39□□□□□ -0.75
CLIP1-212ENST00000540304 DNAH12Q6ZR08 3092 aa10.39□□□□□ -0.75
CLIP1-212ENST00000540304 A0A0B4J269 797 aa10.39□□□□□ -0.75
CLIP1-212ENST00000540304 PDE2AO00408 941 aaPredicted RBP10.39□□□□□ -0.75
CLIP1-212ENST00000540304 ZC3H11AO75152 810 aaKnown RBP eCLIP10.39□□□□□ -0.75
CLIP1-212ENST00000540304 CELF2O95319 508 aaKnown RBP10.39□□□□□ -0.75
CLIP1-212ENST00000540304 MATR3P43243 847 aaKnown RBP eCLIP10.39□□□□□ -0.75
CLIP1-212ENST00000540304 NLRP11P59045 1033 aaKnown RBP10.39□□□□□ -0.75
CLIP1-212ENST00000540304 ARHGAP1Q07960 439 aa10.39□□□□□ -0.75
CLIP1-212ENST00000540304 LAMC2Q13753 1193 aa10.39□□□□□ -0.75
CLIP1-212ENST00000540304 TMEM63BQ5T3F8 832 aa10.39□□□□□ -0.75
CLIP1-212ENST00000540304 MEI1Q5TIA1 1274 aa10.39□□□□□ -0.75
CLIP1-212ENST00000540304 CDCA2Q69YH5 1023 aaPredicted RBP10.39□□□□□ -0.75
CLIP1-212ENST00000540304 ZPBP2Q6X784 338 aa10.39□□□□□ -0.75
CLIP1-212ENST00000540304 C15orf39Q6ZRI6 1047 aa10.39□□□□□ -0.75
CLIP1-212ENST00000540304 ZNF572Q7Z3I7 529 aaPredicted RBP10.39□□□□□ -0.75
CLIP1-212ENST00000540304 FAM71AQ8IYT1 594 aa10.39□□□□□ -0.75
CLIP1-212ENST00000540304 HELQQ8TDG4 1101 aa10.39□□□□□ -0.75
CLIP1-212ENST00000540304 KREMEN1Q96MU8 473 aa10.39□□□□□ -0.75
CLIP1-212ENST00000540304 FNBP1Q96RU3 617 aa10.39□□□□□ -0.75
CLIP1-212ENST00000540304 HAPLN2Q9GZV7 340 aa10.39□□□□□ -0.75
CLIP1-212ENST00000540304 SUGCTQ9HAC7 445 aa10.39□□□□□ -0.75
CLIP1-212ENST00000540304 ANKFY1Q9P2R3 1169 aa10.39□□□□□ -0.75
CLIP1-212ENST00000540304 TRPC6Q9Y210 931 aa10.39□□□□□ -0.75
CLIP1-212ENST00000540304 BRCA2P51587 3418 aa10.39□□□□□ -0.75
CLIP1-212ENST00000540304 CCDC151A5D8V7 595 aa10.38□□□□□ -0.75
CLIP1-212ENST00000540304 HBP1O60381 514 aa10.38□□□□□ -0.75
CLIP1-212ENST00000540304 FTCDO95954 541 aa10.38□□□□□ -0.75
CLIP1-212ENST00000540304 EDN1P05305 212 aa10.38□□□□□ -0.75
CLIP1-212ENST00000540304 TUBBP07437 444 aa10.38□□□□□ -0.75
CLIP1-212ENST00000540304 RHOXF2BP0C7M4 288 aa10.38□□□□□ -0.75
CLIP1-212ENST00000540304 TMEM253P0C7T8 217 aa10.38□□□□□ -0.75
CLIP1-212ENST00000540304 ACOT2P49753 483 aa10.38□□□□□ -0.75
CLIP1-212ENST00000540304 GALCP54803 685 aa10.38□□□□□ -0.75
CLIP1-212ENST00000540304 LAMTOR4Q0VGL1 99 aa10.38□□□□□ -0.75
CLIP1-212ENST00000540304 MKRN4PQ13434 485 aaPredicted RBP10.38□□□□□ -0.75
CLIP1-212ENST00000540304 BRD3Q15059 726 aa10.38□□□□□ -0.75
CLIP1-212ENST00000540304 TAPT1Q6NXT6 567 aa10.38□□□□□ -0.75
CLIP1-212ENST00000540304 CRELD2Q6UXH1 353 aaPredicted RBP10.38□□□□□ -0.75
CLIP1-212ENST00000540304 ZBTB8OSQ8IWT0 167 aa10.38□□□□□ -0.75
CLIP1-212ENST00000540304 SHC3Q92529 594 aa10.38□□□□□ -0.75
CLIP1-212ENST00000540304 KAT5Q92993 513 aa10.38□□□□□ -0.75
CLIP1-212ENST00000540304 ZBTB45Q96K62 511 aaPredicted RBP10.38□□□□□ -0.75
CLIP1-212ENST00000540304 FAM81BQ96LP2 452 aa10.38□□□□□ -0.75
CLIP1-212ENST00000540304 RHOXF2Q9BQY4 288 aa10.38□□□□□ -0.75
CLIP1-212ENST00000540304 MRPL4Q9BYD3 311 aaKnown RBP10.38□□□□□ -0.75
CLIP1-212ENST00000540304 CCDC113Q9H0I3 377 aa10.38□□□□□ -0.75
CLIP1-212ENST00000540304 C2orf40Q9H1Z8 148 aa10.38□□□□□ -0.75
CLIP1-212ENST00000540304 RRAGCQ9HB90 399 aa10.38□□□□□ -0.75
CLIP1-212ENST00000540304 SEPT11Q9NVA2 429 aaKnown RBP10.38□□□□□ -0.75
CLIP1-212ENST00000540304 RBAKQ9NYW8 714 aaPredicted RBP10.38□□□□□ -0.75
CLIP1-212ENST00000540304 ERAP1Q9NZ08 941 aa10.38□□□□□ -0.75
CLIP1-212ENST00000540304 SMARCAL1Q9NZC9 954 aa10.38□□□□□ -0.75
CLIP1-212ENST00000540304 EHD2Q9NZN4 543 aa10.38□□□□□ -0.75
CLIP1-212ENST00000540304 RAB21Q9UL25 225 aa10.38□□□□□ -0.75
CLIP1-212ENST00000540304 NCANO14594 1321 aa10.38□□□□□ -0.75
CLIP1-212ENST00000540304 ADGRA2Q96PE1 1338 aa10.38□□□□□ -0.75
CLIP1-212ENST00000540304 RBM47A0AV96 593 aaKnown RBP10.38□□□□□ -0.75
CLIP1-212ENST00000540304 GH1P01241 217 aa10.38□□□□□ -0.75
CLIP1-212ENST00000540304 USP8P40818 1118 aa10.38□□□□□ -0.75
CLIP1-212ENST00000540304 ITIH3Q06033 890 aa10.38□□□□□ -0.75
CLIP1-212ENST00000540304 CCDC181Q5TID7 509 aa10.38□□□□□ -0.75
CLIP1-212ENST00000540304 ENOSF1Q7L5Y1 443 aa10.38□□□□□ -0.75
CLIP1-212ENST00000540304 LRRC71Q8N4P6 559 aa10.38□□□□□ -0.75
CLIP1-212ENST00000540304 SLC20A1Q8WUM9 679 aa10.38□□□□□ -0.75
CLIP1-212ENST00000540304 LMBR1Q8WVP7 490 aa10.38□□□□□ -0.75
CLIP1-212ENST00000540304 ZNF516Q92618 1163 aa10.38□□□□□ -0.75
CLIP1-212ENST00000540304 PNKPQ96T60 521 aa10.38□□□□□ -0.75
CLIP1-212ENST00000540304 RMI1Q9H9A7 625 aa10.38□□□□□ -0.75
CLIP1-212ENST00000540304 CDKN2AIPQ9NXV6 580 aaPredicted RBP10.38□□□□□ -0.75
CLIP1-212ENST00000540304 TMCO5BA8MYB1 307 aa10.37□□□□□ -0.75
CLIP1-212ENST00000540304 MSCO60682 206 aa10.37□□□□□ -0.75
CLIP1-212ENST00000540304 NAT1P18440 290 aa10.37□□□□□ -0.75
CLIP1-212ENST00000540304 TNNI1P19237 187 aa10.37□□□□□ -0.75
CLIP1-212ENST00000540304 CXCR5P32302 372 aa10.37□□□□□ -0.75
CLIP1-212ENST00000540304 GCNT1Q02742 428 aa10.37□□□□□ -0.75
CLIP1-212ENST00000540304 PRPF4BQ13523 1007 aaKnown RBP10.37□□□□□ -0.75
CLIP1-212ENST00000540304 GRB14Q14449 540 aa10.37□□□□□ -0.75
CLIP1-212ENST00000540304 FAM110CQ1W6H9 321 aa10.37□□□□□ -0.75
CLIP1-212ENST00000540304 ZACNQ401N2 412 aa10.37□□□□□ -0.75
CLIP1-212ENST00000540304 CC2D1AQ6P1N0 951 aaPredicted RBP10.37□□□□□ -0.75
CLIP1-212ENST00000540304 MAMDC4Q6UXC1 1216 aa10.37□□□□□ -0.75
CLIP1-212ENST00000540304 GET4Q7L5D6 327 aaPredicted RBP10.37□□□□□ -0.75
CLIP1-212ENST00000540304 GPR142Q7Z601 462 aa10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms