RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 NBPF12Q5TAG4 269 aaPredicted RBP14.1□□□□□ -0.15
LDLR-203ENST00000535915 SAMD7Q7Z3H4 446 aa14.1□□□□□ -0.15
LDLR-203ENST00000535915 PACS2Q86VP3 889 aa14.1□□□□□ -0.15
LDLR-203ENST00000535915 SPATS2Q86XZ4 545 aaKnown RBP14.1□□□□□ -0.15
LDLR-203ENST00000535915 MCPH1Q8NEM0 835 aa14.1□□□□□ -0.15
LDLR-203ENST00000535915 DDX1Q92499 740 aaKnown RBP14.1□□□□□ -0.15
LDLR-203ENST00000535915 TAOK3Q9H2K8 898 aa14.1□□□□□ -0.15
LDLR-203ENST00000535915 GRHL1Q9NZI5 618 aa14.1□□□□□ -0.15
LDLR-203ENST00000535915 TELO2Q9Y4R8 837 aa14.1□□□□□ -0.15
LDLR-203ENST00000535915 KIAA0754O94854 1291 aa14.1□□□□□ -0.15
LDLR-203ENST00000535915 CALCAP01258 141 aa14.1□□□□□ -0.15
LDLR-203ENST00000535915 BRDTQ58F21 947 aaPredicted RBP14.1□□□□□ -0.15
LDLR-203ENST00000535915 DENND2CQ68D51 928 aa14.1□□□□□ -0.15
LDLR-203ENST00000535915 HOOK3Q86VS8 718 aa14.1□□□□□ -0.15
LDLR-203ENST00000535915 NSUN6Q8TEA1 469 aaKnown RBP14.1□□□□□ -0.15
LDLR-203ENST00000535915 FAM84AQ96KN4 292 aa14.1□□□□□ -0.15
LDLR-203ENST00000535915 IFT74Q96LB3 600 aa14.1□□□□□ -0.15
LDLR-203ENST00000535915 JPH1Q9HDC5 661 aaPredicted RBP14.1□□□□□ -0.15
LDLR-203ENST00000535915 PIM2Q9P1W9 311 aa14.1□□□□□ -0.15
LDLR-203ENST00000535915 MTRF1LQ9UGC7 380 aaKnown RBP14.1□□□□□ -0.15
LDLR-203ENST00000535915 PARP2Q9UGN5 583 aa14.1□□□□□ -0.15
LDLR-203ENST00000535915 HACL1Q9UJ83 578 aa14.1□□□□□ -0.15
LDLR-203ENST00000535915 SRRM3A6NNA2 597 aaPredicted RBP14.09□□□□□ -0.15
LDLR-203ENST00000535915 CAND2O75155 1236 aa14.09□□□□□ -0.15
LDLR-203ENST00000535915 STBD1O95210 358 aa14.09□□□□□ -0.15
LDLR-203ENST00000535915 SHBGP04278 402 aa14.09□□□□□ -0.15
LDLR-203ENST00000535915 GBP1P32455 592 aa14.09□□□□□ -0.15
LDLR-203ENST00000535915 COILP38432 576 aaPredicted RBP14.09□□□□□ -0.15
LDLR-203ENST00000535915 ZNF280AP59817 542 aaPredicted RBP14.09□□□□□ -0.15
LDLR-203ENST00000535915 LLGL1Q15334 1064 aa14.09□□□□□ -0.15
LDLR-203ENST00000535915 MICALCLQ6ZW33 695 aa14.09□□□□□ -0.15
LDLR-203ENST00000535915 CCDC60Q8IWA6 550 aaPredicted RBP14.09□□□□□ -0.15
LDLR-203ENST00000535915 ZKSCAN4Q969J2 545 aaPredicted RBP14.09□□□□□ -0.15
LDLR-203ENST00000535915 EPB41L4BQ9H329 900 aa14.09□□□□□ -0.15
LDLR-203ENST00000535915 C1orf112Q9NSG2 853 aa14.09□□□□□ -0.15
LDLR-203ENST00000535915 GRIN3BO60391 1043 aa14.09□□□□□ -0.15
LDLR-203ENST00000535915 RGS20O76081 388 aa14.09□□□□□ -0.15
LDLR-203ENST00000535915 NUDT17P0C025 328 aa14.09□□□□□ -0.15
LDLR-203ENST00000535915 RARAP10276 462 aa14.09□□□□□ -0.15
LDLR-203ENST00000535915 GARTP22102 1010 aa14.09□□□□□ -0.15
LDLR-203ENST00000535915 PRKCEQ02156 737 aa14.09□□□□□ -0.15
LDLR-203ENST00000535915 CLEC16AQ2KHT3 1053 aa14.09□□□□□ -0.15
LDLR-203ENST00000535915 ATP6V0A4Q9HBG4 840 aa14.09□□□□□ -0.15
LDLR-203ENST00000535915 XPNPEP1Q9NQW7 623 aa14.09□□□□□ -0.15
LDLR-203ENST00000535915 CYP26B1Q9NR63 512 aa14.09□□□□□ -0.15
LDLR-203ENST00000535915 SLC9A2Q9UBY0 812 aa14.09□□□□□ -0.15
LDLR-203ENST00000535915 ANAPC7Q9UJX3 599 aa14.09□□□□□ -0.15
LDLR-203ENST00000535915 GMNCA6NCL1 334 aa14.08□□□□□ -0.16
LDLR-203ENST00000535915 KCNJ1P48048 391 aa14.08□□□□□ -0.16
LDLR-203ENST00000535915 LIG4P49917 911 aa14.08□□□□□ -0.16
LDLR-203ENST00000535915 HMGCS2P54868 508 aa14.08□□□□□ -0.16
LDLR-203ENST00000535915 GCNT1Q02742 428 aa14.08□□□□□ -0.16
LDLR-203ENST00000535915 CYP1B1Q16678 543 aa14.08□□□□□ -0.16
LDLR-203ENST00000535915 MTERF2Q49AM1 385 aa14.08□□□□□ -0.16
LDLR-203ENST00000535915 LMBRD2Q68DH5 695 aaPredicted RBP14.08□□□□□ -0.16
LDLR-203ENST00000535915 ENOSF1Q7L5Y1 443 aa14.08□□□□□ -0.16
LDLR-203ENST00000535915 ZNF280CQ8ND82 737 aa14.08□□□□□ -0.16
LDLR-203ENST00000535915 POLR3FQ9H1D9 316 aaPredicted RBP14.08□□□□□ -0.16
LDLR-203ENST00000535915 AS3MTQ9HBK9 375 aa14.08□□□□□ -0.16
LDLR-203ENST00000535915 TLDC2A0PJX2 215 aa14.08□□□□□ -0.16
LDLR-203ENST00000535915 MAPK4P31152 587 aa14.08□□□□□ -0.16
LDLR-203ENST00000535915 ACTR2P61160 394 aa14.08□□□□□ -0.16
LDLR-203ENST00000535915 SLC29A2Q14542 456 aa14.08□□□□□ -0.16
LDLR-203ENST00000535915 TAS1R3Q7RTX0 852 aa14.08□□□□□ -0.16
LDLR-203ENST00000535915 MICALL2Q8IY33 904 aa14.08□□□□□ -0.16
LDLR-203ENST00000535915 SCYL3Q8IZE3 742 aa14.08□□□□□ -0.16
LDLR-203ENST00000535915 OTUD6BQ8N6M0 293 aa14.08□□□□□ -0.16
LDLR-203ENST00000535915 RNF25Q96BH1 459 aaPredicted RBP14.08□□□□□ -0.16
LDLR-203ENST00000535915 RUNDC3BQ96NL0 473 aa14.08□□□□□ -0.16
LDLR-203ENST00000535915 PLVAPQ9BX97 442 aa14.08□□□□□ -0.16
LDLR-203ENST00000535915 PDLIM7Q9NR12 457 aa14.08□□□□□ -0.16
LDLR-203ENST00000535915 PICK1Q9NRD5 415 aa14.08□□□□□ -0.16
LDLR-203ENST00000535915 PASKQ96RG2 1323 aa14.08□□□□□ -0.16
LDLR-203ENST00000535915 SMIM23A6NLE4 172 aa14.07□□□□□ -0.16
LDLR-203ENST00000535915 CLDN3O15551 220 aa14.07□□□□□ -0.16
LDLR-203ENST00000535915 MEFVO15553 781 aaPredicted RBP14.07□□□□□ -0.16
LDLR-203ENST00000535915 TRAPPC3O43617 180 aa14.07□□□□□ -0.16
LDLR-203ENST00000535915 TNNI1P19237 187 aa14.07□□□□□ -0.16
LDLR-203ENST00000535915 CDR1P51861 262 aa14.07□□□□□ -0.16
LDLR-203ENST00000535915 PPP1R7Q15435 360 aa14.07□□□□□ -0.16
LDLR-203ENST00000535915 SIX1Q15475 284 aaPredicted RBP14.07□□□□□ -0.16
LDLR-203ENST00000535915 REPS2Q8NFH8 660 aa14.07□□□□□ -0.16
LDLR-203ENST00000535915 ZNF516Q92618 1163 aa14.07□□□□□ -0.16
LDLR-203ENST00000535915 TLCD1Q96CP7 247 aa14.07□□□□□ -0.16
LDLR-203ENST00000535915 FNBP1Q96RU3 617 aa14.07□□□□□ -0.16
LDLR-203ENST00000535915 PAGR1Q9BTK6 254 aa14.07□□□□□ -0.16
LDLR-203ENST00000535915 SEMA4AQ9H3S1 761 aa14.07□□□□□ -0.16
LDLR-203ENST00000535915 ZNF214Q9UL59 606 aaPredicted RBP14.07□□□□□ -0.16
LDLR-203ENST00000535915 FZD1Q9UP38 647 aa14.07□□□□□ -0.16
LDLR-203ENST00000535915 ATXN2Q99700 1313 aaKnown RBP14.07□□□□□ -0.16
LDLR-203ENST00000535915 ZC3H11AO75152 810 aaKnown RBP eCLIP14.07□□□□□ -0.16
LDLR-203ENST00000535915 SCP2P22307 547 aa14.07□□□□□ -0.16
LDLR-203ENST00000535915 PSEN1P49768 467 aa14.07□□□□□ -0.16
LDLR-203ENST00000535915 RTP1P59025 263 aa14.07□□□□□ -0.16
LDLR-203ENST00000535915 WDR44Q5JSH3 913 aa14.07□□□□□ -0.16
LDLR-203ENST00000535915 DCAF15Q66K64 600 aa14.07□□□□□ -0.16
LDLR-203ENST00000535915 CYFIP1Q7L576 1253 aa14.07□□□□□ -0.16
LDLR-203ENST00000535915 PHLDB2Q86SQ0 1253 aa14.07□□□□□ -0.16
LDLR-203ENST00000535915 CPA5Q8WXQ8 436 aa14.07□□□□□ -0.16
LDLR-203ENST00000535915 CYFIP2Q96F07 1278 aa14.07□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms