RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 FBXO38Q6PIJ6 1188 aa22.33■■□□□ 1.16
VPS28-209ENST00000528142 ENOSF1Q7L5Y1 443 aa22.33■■□□□ 1.16
VPS28-209ENST00000528142 PALB2Q86YC2 1186 aa22.33■■□□□ 1.16
VPS28-209ENST00000528142 IFNLR1Q8IU57 520 aaPredicted RBP22.33■■□□□ 1.16
VPS28-209ENST00000528142 DOCK3Q8IZD9 2030 aa22.33■■□□□ 1.16
VPS28-209ENST00000528142 GPR161Q8N6U8 529 aaKnown RBP22.33■■□□□ 1.16
VPS28-209ENST00000528142 ELMO3Q96BJ8 720 aa22.33■■□□□ 1.16
VPS28-209ENST00000528142 TCHPQ9BT92 498 aa22.33■■□□□ 1.16
VPS28-209ENST00000528142 EPC1Q9H2F5 836 aa22.33■■□□□ 1.16
VPS28-209ENST00000528142 INO80B-WBP1J3KQ70 363 aa22.32■■□□□ 1.16
VPS28-209ENST00000528142 ZNF185O15231 689 aa22.32■■□□□ 1.16
VPS28-209ENST00000528142 OGTO15294 1046 aa22.32■■□□□ 1.16
VPS28-209ENST00000528142 ZSCAN20P17040 1043 aaPredicted RBP22.32■■□□□ 1.16
VPS28-209ENST00000528142 USP8P40818 1118 aa22.32■■□□□ 1.16
VPS28-209ENST00000528142 DGKDQ16760 1214 aa22.32■■□□□ 1.16
VPS28-209ENST00000528142 PRAMEF19Q5SWL8 479 aa22.32■■□□□ 1.16
VPS28-209ENST00000528142 MTHFD1LQ6UB35 978 aa22.32■■□□□ 1.16
VPS28-209ENST00000528142 EPS8L1Q8TE68 723 aa22.32■■□□□ 1.16
VPS28-209ENST00000528142 MMS19Q96T76 1030 aa22.32■■□□□ 1.16
VPS28-209ENST00000528142 INO80BQ9C086 356 aaPredicted RBP22.32■■□□□ 1.16
VPS28-209ENST00000528142 CPSF3Q9UKF6 684 aaKnown RBP22.32■■□□□ 1.16
VPS28-209ENST00000528142 GNEQ9Y223 722 aaKnown RBP22.32■■□□□ 1.16
VPS28-209ENST00000528142 CYP26A1O43174 497 aa22.31■■□□□ 1.16
VPS28-209ENST00000528142 B4GALT5O43286 388 aa22.31■■□□□ 1.16
VPS28-209ENST00000528142 NCK2O43639 380 aa22.31■■□□□ 1.16
VPS28-209ENST00000528142 IQCF3P0C7M6 154 aa22.31■■□□□ 1.16
VPS28-209ENST00000528142 TMEM253P0C7T8 217 aa22.31■■□□□ 1.16
VPS28-209ENST00000528142 CHRNB2P17787 502 aa22.31■■□□□ 1.16
VPS28-209ENST00000528142 APLP1P51693 650 aa22.31■■□□□ 1.16
VPS28-209ENST00000528142 SREBF2Q12772 1141 aa22.31■■□□□ 1.16
VPS28-209ENST00000528142 MARCH8Q5T0T0 291 aa22.31■■□□□ 1.16
VPS28-209ENST00000528142 ATF7IP2Q5U623 682 aa22.31■■□□□ 1.16
VPS28-209ENST00000528142 MPZL3Q6UWV2 235 aa22.31■■□□□ 1.16
VPS28-209ENST00000528142 NOP9Q86U38 636 aaKnown RBP22.31■■□□□ 1.16
VPS28-209ENST00000528142 CREG2Q8IUH2 290 aa22.31■■□□□ 1.16
VPS28-209ENST00000528142 FAM81BQ96LP2 452 aa22.31■■□□□ 1.16
VPS28-209ENST00000528142 OSBPL9Q96SU4 736 aa22.31■■□□□ 1.16
VPS28-209ENST00000528142 MAP7D2Q96T17 732 aa22.31■■□□□ 1.16
VPS28-209ENST00000528142 CREBZFQ9NS37 354 aa22.31■■□□□ 1.16
VPS28-209ENST00000528142 TAS2R14Q9NYV8 317 aa22.31■■□□□ 1.16
VPS28-209ENST00000528142 HYOU1Q9Y4L1 999 aa22.31■■□□□ 1.16
VPS28-209ENST00000528142 ZNF865P0CJ78 1059 aaPredicted RBP22.31■■□□□ 1.16
VPS28-209ENST00000528142 TCP1P17987 556 aaKnown RBP22.31■■□□□ 1.16
VPS28-209ENST00000528142 HTRA3P83110 453 aa22.31■■□□□ 1.16
VPS28-209ENST00000528142 FAM187BQ17R55 369 aa22.31■■□□□ 1.16
VPS28-209ENST00000528142 DEFB115Q30KQ5 88 aa22.31■■□□□ 1.16
VPS28-209ENST00000528142 MEI1Q5TIA1 1274 aa22.31■■□□□ 1.16
VPS28-209ENST00000528142 RPUSD2Q8IZ73 545 aaKnown RBP22.31■■□□□ 1.16
VPS28-209ENST00000528142 OR5B17Q8NGF7 314 aa22.31■■□□□ 1.16
VPS28-209ENST00000528142 COG1Q8WTW3 980 aa22.31■■□□□ 1.16
VPS28-209ENST00000528142 CAPNS2Q96L46 248 aa22.31■■□□□ 1.16
VPS28-209ENST00000528142 TSKSQ9UJT2 592 aa22.31■■□□□ 1.16
VPS28-209ENST00000528142 TNFSF13BQ9Y275 285 aa22.31■■□□□ 1.16
VPS28-209ENST00000528142 A6NJR5 290 aa22.3■■□□□ 1.16
VPS28-209ENST00000528142 PDE2AO00408 941 aaPredicted RBP22.3■■□□□ 1.16
VPS28-209ENST00000528142 IGHA2P01877 340 aa22.3■■□□□ 1.16
VPS28-209ENST00000528142 CTGFP29279 349 aa22.3■■□□□ 1.16
VPS28-209ENST00000528142 PIK3CAP42336 1068 aa22.3■■□□□ 1.16
VPS28-209ENST00000528142 PHKA2P46019 1235 aa22.3■■□□□ 1.16
VPS28-209ENST00000528142 CKAP4Q07065 602 aaKnown RBP22.3■■□□□ 1.16
VPS28-209ENST00000528142 PPFIA1Q13136 1202 aa22.3■■□□□ 1.16
VPS28-209ENST00000528142 BIRC3Q13489 604 aa22.3■■□□□ 1.16
VPS28-209ENST00000528142 GRIK4Q16099 956 aa22.3■■□□□ 1.16
VPS28-209ENST00000528142 IFI16Q16666 785 aaKnown RBP22.3■■□□□ 1.16
VPS28-209ENST00000528142 WDR44Q5JSH3 913 aa22.3■■□□□ 1.16
VPS28-209ENST00000528142 NFRKBQ6P4R8 1299 aa22.3■■□□□ 1.16
VPS28-209ENST00000528142 SLC47A2Q86VL8 602 aa22.3■■□□□ 1.16
VPS28-209ENST00000528142 LRRC57Q8N9N7 239 aa22.3■■□□□ 1.16
VPS28-209ENST00000528142 DHX38Q92620 1227 aaKnown RBP22.3■■□□□ 1.16
VPS28-209ENST00000528142 CAPZA3Q96KX2 299 aa22.3■■□□□ 1.16
VPS28-209ENST00000528142 C1orf112Q9NSG2 853 aa22.3■■□□□ 1.16
VPS28-209ENST00000528142 PRMT7Q9NVM4 692 aaPredicted RBP22.3■■□□□ 1.16
VPS28-209ENST00000528142 GJD2Q9UKL4 321 aa22.3■■□□□ 1.16
VPS28-209ENST00000528142 NCANO14594 1321 aa22.3■■□□□ 1.16
VPS28-209ENST00000528142 TMCO5BA8MYB1 307 aa22.29■■□□□ 1.16
VPS28-209ENST00000528142 DYNC1LI2O43237 492 aaPredicted RBP22.29■■□□□ 1.16
VPS28-209ENST00000528142 TMOD1P28289 359 aa22.29■■□□□ 1.16
VPS28-209ENST00000528142 AP3M2P53677 418 aa22.29■■□□□ 1.16
VPS28-209ENST00000528142 EEF1DP3Q658K8 133 aa22.29■■□□□ 1.16
VPS28-209ENST00000528142 WDR49Q8IV35 697 aa22.29■■□□□ 1.16
VPS28-209ENST00000528142 TPCN2Q8NHX9 752 aa22.29■■□□□ 1.16
VPS28-209ENST00000528142 PCDHB18PQ96TA0 734 aa22.29■■□□□ 1.16
VPS28-209ENST00000528142 ISCUQ9H1K1 167 aa22.29■■□□□ 1.16
VPS28-209ENST00000528142 ACP6Q9NPH0 428 aa22.29■■□□□ 1.16
VPS28-209ENST00000528142 ZSWIM8A7E2V4 1837 aa22.29■■□□□ 1.16
VPS28-209ENST00000528142 A0A087WZ62 844 aa22.29■■□□□ 1.16
VPS28-209ENST00000528142 FTCDO95954 541 aa22.29■■□□□ 1.16
VPS28-209ENST00000528142 CYP11B1P15538 503 aa22.29■■□□□ 1.16
VPS28-209ENST00000528142 NOP2P46087 812 aaKnown RBP22.29■■□□□ 1.16
VPS28-209ENST00000528142 CCL14Q16627 93 aa22.29■■□□□ 1.16
VPS28-209ENST00000528142 AMHR2Q16671 573 aa22.29■■□□□ 1.16
VPS28-209ENST00000528142 OLFML2BQ68BL8 750 aa22.29■■□□□ 1.16
VPS28-209ENST00000528142 NOA1Q8NC60 698 aaKnown RBP22.29■■□□□ 1.16
VPS28-209ENST00000528142 FDXACB1Q9BRP7 624 aaPredicted RBP22.29■■□□□ 1.16
VPS28-209ENST00000528142 APOBEC3GQ9HC16 384 aaKnown RBP22.29■■□□□ 1.16
VPS28-209ENST00000528142 ZFYVE28Q9HCC9 887 aa22.29■■□□□ 1.16
VPS28-209ENST00000528142 SEPT11Q9NVA2 429 aaKnown RBP22.29■■□□□ 1.16
VPS28-209ENST00000528142 ANKRD62A6NC57 917 aa22.28■■□□□ 1.16
VPS28-209ENST00000528142 ZNF572Q7Z3I7 529 aaPredicted RBP22.28■■□□□ 1.16
VPS28-209ENST00000528142 SLFN11Q7Z7L1 901 aa22.28■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms