RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 DISC1Q9NRI5 854 aa4.67□□□□□ -1.66
CD44-226ENST00000527889 SLC5A4Q9NY91 659 aa4.67□□□□□ -1.66
CD44-226ENST00000527889 DACT1Q9NYF0 836 aa4.67□□□□□ -1.66
CD44-226ENST00000527889 NOP53Q9NZM5 478 aaKnown RBP4.67□□□□□ -1.66
CD44-226ENST00000527889 CRIM1Q9NZV1 1036 aa4.67□□□□□ -1.66
CD44-226ENST00000527889 NDOR1Q9UHB4 597 aa4.67□□□□□ -1.66
CD44-226ENST00000527889 ZNF112Q9UJU3 913 aa4.67□□□□□ -1.66
CD44-226ENST00000527889 PPP1R9AQ9ULJ8 1098 aa4.67□□□□□ -1.66
CD44-226ENST00000527889 FRMD4BQ9Y2L6 1034 aa4.67□□□□□ -1.66
CD44-226ENST00000527889 ZNF451Q9Y4E5 1061 aa4.67□□□□□ -1.66
CD44-226ENST00000527889 PPP2R3BQ9Y5P8 575 aa4.67□□□□□ -1.66
CD44-226ENST00000527889 TMEM265A0A087WTH1 108 aa4.66□□□□□ -1.66
CD44-226ENST00000527889 A0A0A0MRY4 1105 aa4.66□□□□□ -1.66
CD44-226ENST00000527889 LOC101059915A0A1B0GWI6 518 aaPredicted RBP4.66□□□□□ -1.66
CD44-226ENST00000527889 ESYT2A0FGR8 921 aa4.66□□□□□ -1.66
CD44-226ENST00000527889 hCG_1984214I3L0E3 225 aa4.66□□□□□ -1.66
CD44-226ENST00000527889 PIK3R2O00459 728 aa4.66□□□□□ -1.66
CD44-226ENST00000527889 WDR46O15213 610 aaKnown RBP4.66□□□□□ -1.66
CD44-226ENST00000527889 SHOXO15266 292 aa4.66□□□□□ -1.66
CD44-226ENST00000527889 DLX3O60479 287 aa4.66□□□□□ -1.66
CD44-226ENST00000527889 CUTAO60888 179 aa4.66□□□□□ -1.66
CD44-226ENST00000527889 PPP6R2O75170 966 aa4.66□□□□□ -1.66
CD44-226ENST00000527889 DEAF1O75398 565 aaPredicted RBP4.66□□□□□ -1.66
CD44-226ENST00000527889 CST3P01034 146 aaPredicted RBP4.66□□□□□ -1.66
CD44-226ENST00000527889 ASLP04424 464 aa4.66□□□□□ -1.66
CD44-226ENST00000527889 PFKFB1P16118 471 aa4.66□□□□□ -1.66
CD44-226ENST00000527889 VCAM1P19320 739 aa4.66□□□□□ -1.66
CD44-226ENST00000527889 CD247P20963 164 aa4.66□□□□□ -1.66
CD44-226ENST00000527889 GNA11P29992 359 aa4.66□□□□□ -1.66
CD44-226ENST00000527889 COPB2P35606 906 aa4.66□□□□□ -1.66
CD44-226ENST00000527889 NDUFA8P51970 172 aa4.66□□□□□ -1.66
CD44-226ENST00000527889 HMGCS2P54868 508 aa4.66□□□□□ -1.66
CD44-226ENST00000527889 BACE1P56817 501 aa4.66□□□□□ -1.66
CD44-226ENST00000527889 ZNF445P59923 1031 aa4.66□□□□□ -1.66
CD44-226ENST00000527889 GABREP78334 506 aa4.66□□□□□ -1.66
CD44-226ENST00000527889 SNW1Q13573 536 aaKnown RBP4.66□□□□□ -1.66
CD44-226ENST00000527889 VGLL4Q14135 290 aa4.66□□□□□ -1.66
CD44-226ENST00000527889 SLBPQ14493 270 aaKnown RBP eCLIP4.66□□□□□ -1.66
CD44-226ENST00000527889 STAT4Q14765 748 aa4.66□□□□□ -1.66
CD44-226ENST00000527889 NONOQ15233 471 aaKnown RBP eCLIP4.66□□□□□ -1.66
CD44-226ENST00000527889 SUPT20HL1Q3ZLR7 823 aa4.66□□□□□ -1.66
CD44-226ENST00000527889 NOL9Q5SY16 702 aaKnown RBP4.66□□□□□ -1.66
CD44-226ENST00000527889 RESP18Q5W5W9 173 aa4.66□□□□□ -1.66
CD44-226ENST00000527889 ADALQ6DHV7 355 aa4.66□□□□□ -1.66
CD44-226ENST00000527889 GALNT17Q6IS24 598 aa4.66□□□□□ -1.66
CD44-226ENST00000527889 USP17L6PQ6QN14 398 aa4.66□□□□□ -1.66
CD44-226ENST00000527889 SHC4Q6S5L8 630 aa4.66□□□□□ -1.66
CD44-226ENST00000527889 LRSAM1Q6UWE0 723 aa4.66□□□□□ -1.66
CD44-226ENST00000527889 PPP1R3FQ6ZSY5 799 aaPredicted RBP4.66□□□□□ -1.66
CD44-226ENST00000527889 USP50Q70EL3 339 aaPredicted RBP4.66□□□□□ -1.66
CD44-226ENST00000527889 ARMCX6Q7L4S7 300 aa4.66□□□□□ -1.66
CD44-226ENST00000527889 UBE3DQ7Z6J8 389 aa4.66□□□□□ -1.66
CD44-226ENST00000527889 C14orf80Q86SX3 495 aa4.66□□□□□ -1.66
CD44-226ENST00000527889 CD163Q86VB7 1156 aa4.66□□□□□ -1.66
CD44-226ENST00000527889 CREBRFQ8IUR6 639 aa4.66□□□□□ -1.66
CD44-226ENST00000527889 TRIM59Q8IWR1 403 aa4.66□□□□□ -1.66
CD44-226ENST00000527889 ZNF713Q8N859 430 aaPredicted RBP4.66□□□□□ -1.66
CD44-226ENST00000527889 ENGASEQ8NFI3 743 aa4.66□□□□□ -1.66
CD44-226ENST00000527889 DDX55Q8NHQ9 600 aaKnown RBP eCLIP4.66□□□□□ -1.66
CD44-226ENST00000527889 CHURC1Q8WUH1 139 aa4.66□□□□□ -1.66
CD44-226ENST00000527889 ERCC4Q92889 916 aaPredicted RBP4.66□□□□□ -1.66
CD44-226ENST00000527889 CUL5Q93034 780 aa4.66□□□□□ -1.66
CD44-226ENST00000527889 CDCA5Q96FF9 252 aa4.66□□□□□ -1.66
CD44-226ENST00000527889 RCC1LQ96I51 464 aaKnown RBP4.66□□□□□ -1.66
CD44-226ENST00000527889 CLMNQ96JQ2 1002 aa4.66□□□□□ -1.66
CD44-226ENST00000527889 FANCD2OSQ96PS1 177 aa4.66□□□□□ -1.66
CD44-226ENST00000527889 UIMC1Q96RL1 719 aa4.66□□□□□ -1.66
CD44-226ENST00000527889 RPS6KC1Q96S38 1066 aa4.66□□□□□ -1.66
CD44-226ENST00000527889 SLF1Q9BQI6 1058 aa4.66□□□□□ -1.66
CD44-226ENST00000527889 TRIM8Q9BZR9 551 aa4.66□□□□□ -1.66
CD44-226ENST00000527889 MAF1Q9H063 256 aa4.66□□□□□ -1.66
CD44-226ENST00000527889 KIAA1683Q9H0B3 1180 aa4.66□□□□□ -1.66
CD44-226ENST00000527889 GBP3Q9H0R5 595 aa4.66□□□□□ -1.66
CD44-226ENST00000527889 NUP62CLQ9H1M0 184 aa4.66□□□□□ -1.66
CD44-226ENST00000527889 TMEM60Q9H2L4 133 aa4.66□□□□□ -1.66
CD44-226ENST00000527889 CLSTN2Q9H4D0 955 aa4.66□□□□□ -1.66
CD44-226ENST00000527889 PSTPIP2Q9H939 334 aa4.66□□□□□ -1.66
CD44-226ENST00000527889 AS3MTQ9HBK9 375 aa4.66□□□□□ -1.66
CD44-226ENST00000527889 RIC8AQ9NPQ8 531 aa4.66□□□□□ -1.66
CD44-226ENST00000527889 KCNK4Q9NYG8 393 aa4.66□□□□□ -1.66
CD44-226ENST00000527889 ZIM2Q9NZV7 527 aa4.66□□□□□ -1.66
CD44-226ENST00000527889 WHRNQ9P202 907 aa4.66□□□□□ -1.66
CD44-226ENST00000527889 FBXO2Q9UK22 296 aaPredicted RBP4.66□□□□□ -1.66
CD44-226ENST00000527889 FEM1BQ9UK73 627 aa4.66□□□□□ -1.66
CD44-226ENST00000527889 SYNPO2Q9UMS6 1093 aa4.66□□□□□ -1.66
CD44-226ENST00000527889 CEP131Q9UPN4 1083 aa4.66□□□□□ -1.66
CD44-226ENST00000527889 EMC9Q9Y3B6 208 aa4.66□□□□□ -1.66
CD44-226ENST00000527889 NUB1Q9Y5A7 615 aa4.66□□□□□ -1.66
CD44-226ENST00000527889 PCDHA1Q9Y5I3 950 aa4.66□□□□□ -1.66
CD44-226ENST00000527889 SIP14410 1827 aa4.66□□□□□ -1.66
CD44-226ENST00000527889 FRMPD3Q5JV73 1810 aa4.66□□□□□ -1.66
CD44-226ENST00000527889 BRCA2P51587 3418 aa4.65□□□□□ -1.66
CD44-226ENST00000527889 CENPFP49454 3210 aa4.65□□□□□ -1.66
CD44-226ENST00000527889 PDCD11Q14690 1871 aaKnown RBP4.65□□□□□ -1.66
CD44-226ENST00000527889 A0A087WWV3 80 aa4.65□□□□□ -1.67
CD44-226ENST00000527889 A0A1W2PQ27 194 aa4.65□□□□□ -1.67
CD44-226ENST00000527889 A0A1W2PQ64 194 aa4.65□□□□□ -1.67
CD44-226ENST00000527889 A0A1W2PQD8 194 aa4.65□□□□□ -1.67
CD44-226ENST00000527889 FSD2A1L4K1 749 aa4.65□□□□□ -1.67
CD44-226ENST00000527889 VWA3AA6NCI4 1184 aa4.65□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms