RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 C2orf40Q9H1Z8 148 aa26.04■■□□□ 1.76
CPSF1-202ENST00000527827 SIT1Q9Y3P8 196 aa26.04■■□□□ 1.76
CPSF1-202ENST00000527827 CACNA1IQ9P0X4 2223 aa26.03■■□□□ 1.76
CPSF1-202ENST00000527827 C8AP07357 584 aa26.03■■□□□ 1.76
CPSF1-202ENST00000527827 MCM7P33993 719 aa26.03■■□□□ 1.76
CPSF1-202ENST00000527827 PRPF4BQ13523 1007 aaKnown RBP26.03■■□□□ 1.76
CPSF1-202ENST00000527827 LIN9Q5TKA1 542 aa26.03■■□□□ 1.76
CPSF1-202ENST00000527827 EEF1DP3Q658K8 133 aa26.03■■□□□ 1.76
CPSF1-202ENST00000527827 DCLRE1AQ6PJP8 1040 aa26.03■■□□□ 1.76
CPSF1-202ENST00000527827 PARM1Q6UWI2 310 aa26.03■■□□□ 1.76
CPSF1-202ENST00000527827 CDH7Q9ULB5 785 aa26.03■■□□□ 1.76
CPSF1-202ENST00000527827 R4GN57 208 aa26.03■■□□□ 1.76
CPSF1-202ENST00000527827 PRKCBP05771 671 aa26.02■■□□□ 1.76
CPSF1-202ENST00000527827 IGFBP6P24592 240 aaPredicted RBP26.02■■□□□ 1.76
CPSF1-202ENST00000527827 GPC5P78333 572 aa26.02■■□□□ 1.76
CPSF1-202ENST00000527827 TRIM29Q14134 588 aa26.02■■□□□ 1.76
CPSF1-202ENST00000527827 PPM1LQ5SGD2 360 aa26.02■■□□□ 1.76
CPSF1-202ENST00000527827 PADI6Q6TGC4 694 aa26.02■■□□□ 1.76
CPSF1-202ENST00000527827 FOXQ1Q9C009 403 aa26.02■■□□□ 1.76
CPSF1-202ENST00000527827 SEMA4AQ9H3S1 761 aa26.02■■□□□ 1.76
CPSF1-202ENST00000527827 MIA3Q5JRA6 1907 aa26.02■■□□□ 1.76
CPSF1-202ENST00000527827 ACKR2O00590 384 aa26.01■■□□□ 1.75
CPSF1-202ENST00000527827 CCL16O15467 120 aa26.01■■□□□ 1.75
CPSF1-202ENST00000527827 GLULP15104 373 aa26.01■■□□□ 1.75
CPSF1-202ENST00000527827 CYP11B2P19099 503 aa26.01■■□□□ 1.75
CPSF1-202ENST00000527827 HOXA9P31269 272 aa26.01■■□□□ 1.75
CPSF1-202ENST00000527827 ID4P47928 161 aa26.01■■□□□ 1.75
CPSF1-202ENST00000527827 STARD6P59095 220 aa26.01■■□□□ 1.75
CPSF1-202ENST00000527827 COL4A3Q01955 1670 aa26.01■■□□□ 1.75
CPSF1-202ENST00000527827 ST3GAL1Q11201 340 aa26.01■■□□□ 1.75
CPSF1-202ENST00000527827 ELAVL2Q12926 359 aaKnown RBP26.01■■□□□ 1.75
CPSF1-202ENST00000527827 MAPK6Q16659 721 aa26.01■■□□□ 1.75
CPSF1-202ENST00000527827 LMNAP02545 664 aaKnown RBP26■■□□□ 1.75
CPSF1-202ENST00000527827 NAMPTP43490 491 aa26■■□□□ 1.75
CPSF1-202ENST00000527827 TMEM132AQ24JP5 1023 aa26■■□□□ 1.75
CPSF1-202ENST00000527827 PJA1Q8NG27 643 aa26■■□□□ 1.75
CPSF1-202ENST00000527827 ITFG1Q8TB96 612 aa26■■□□□ 1.75
CPSF1-202ENST00000527827 KCNG4Q8TDN1 519 aa26■■□□□ 1.75
CPSF1-202ENST00000527827 FGF13Q92913 245 aa26■■□□□ 1.75
CPSF1-202ENST00000527827 ADPGKQ9BRR6 497 aa26■■□□□ 1.75
CPSF1-202ENST00000527827 LRRN2O75325 713 aa25.99■■□□□ 1.75
CPSF1-202ENST00000527827 SP9P0CG40 484 aa25.99■■□□□ 1.75
CPSF1-202ENST00000527827 LIG1P18858 919 aa25.99■■□□□ 1.75
CPSF1-202ENST00000527827 RPA1P27694 616 aa25.99■■□□□ 1.75
CPSF1-202ENST00000527827 RAB33AQ14088 237 aa25.99■■□□□ 1.75
CPSF1-202ENST00000527827 PDXDC1Q6P996 788 aa25.99■■□□□ 1.75
CPSF1-202ENST00000527827 PDZRN4Q6ZMN7 1036 aaPredicted RBP25.99■■□□□ 1.75
CPSF1-202ENST00000527827 ERMP1Q7Z2K6 904 aa25.99■■□□□ 1.75
CPSF1-202ENST00000527827 C1orf210Q8IVY1 113 aa25.99■■□□□ 1.75
CPSF1-202ENST00000527827 DEPTORQ8TB45 409 aa25.99■■□□□ 1.75
CPSF1-202ENST00000527827 SLC7A14Q8TBB6 771 aa25.99■■□□□ 1.75
CPSF1-202ENST00000527827 POLIQ9UNA4 740 aa25.99■■□□□ 1.75
CPSF1-202ENST00000527827 GDAQ9Y2T3 454 aa25.99■■□□□ 1.75
CPSF1-202ENST00000527827 ARHGEF35A5YM69 484 aa25.98■■□□□ 1.75
CPSF1-202ENST00000527827 POU2F2P09086 479 aa25.98■■□□□ 1.75
CPSF1-202ENST00000527827 FGFR3P22607 806 aa25.98■■□□□ 1.75
CPSF1-202ENST00000527827 OR1D2P34982 312 aa25.98■■□□□ 1.75
CPSF1-202ENST00000527827 AXDND1Q5T1B0 1012 aaPredicted RBP25.98■■□□□ 1.75
CPSF1-202ENST00000527827 CD300LGQ6UXG3 332 aa25.98■■□□□ 1.75
CPSF1-202ENST00000527827 MTSS1LQ765P7 747 aa25.98■■□□□ 1.75
CPSF1-202ENST00000527827 KIFC3Q9BVG8 833 aa25.98■■□□□ 1.75
CPSF1-202ENST00000527827 POLD4Q9HCU8 107 aa25.98■■□□□ 1.75
CPSF1-202ENST00000527827 HCFC1R1Q9NWW0 138 aa25.98■■□□□ 1.75
CPSF1-202ENST00000527827 MTRRQ9UBK8 725 aa25.98■■□□□ 1.75
CPSF1-202ENST00000527827 CACNA1AO00555 2505 aa25.98■■□□□ 1.75
CPSF1-202ENST00000527827 OTOGLQ3ZCN5 2332 aa25.98■■□□□ 1.75
CPSF1-202ENST00000527827 TMEM189-UBE2V1I3L0A0 370 aa25.97■■□□□ 1.75
CPSF1-202ENST00000527827 XYLBO75191 536 aa25.97■■□□□ 1.75
CPSF1-202ENST00000527827 RBM25P49756 843 aaKnown RBP25.97■■□□□ 1.75
CPSF1-202ENST00000527827 GUCY1B3Q02153 619 aa25.97■■□□□ 1.75
CPSF1-202ENST00000527827 GLRA4Q5JXX5 417 aa25.97■■□□□ 1.75
CPSF1-202ENST00000527827 NT5DC1Q5TFE4 455 aa25.97■■□□□ 1.75
CPSF1-202ENST00000527827 RSPO2Q6UXX9 243 aaPredicted RBP25.97■■□□□ 1.75
CPSF1-202ENST00000527827 PPP1R10Q96QC0 940 aaKnown RBP25.97■■□□□ 1.75
CPSF1-202ENST00000527827 OR52Z1P0C646 297 aa25.96■■□□□ 1.75
CPSF1-202ENST00000527827 NEK4P51957 841 aa25.96■■□□□ 1.75
CPSF1-202ENST00000527827 SNW1Q13573 536 aaKnown RBP25.96■■□□□ 1.75
CPSF1-202ENST00000527827 ZNF174Q15697 407 aa25.96■■□□□ 1.75
CPSF1-202ENST00000527827 UVSSAQ2YD98 709 aa25.96■■□□□ 1.75
CPSF1-202ENST00000527827 DCAF4L1Q3SXM0 396 aa25.96■■□□□ 1.75
CPSF1-202ENST00000527827 MAML2Q8IZL2 1156 aaPredicted RBP25.96■■□□□ 1.75
CPSF1-202ENST00000527827 ERMNQ8TAM6 284 aa25.96■■□□□ 1.75
CPSF1-202ENST00000527827 SHDQ96IW2 340 aa25.96■■□□□ 1.75
CPSF1-202ENST00000527827 DDX23Q9BUQ8 820 aaKnown RBP25.96■■□□□ 1.75
CPSF1-202ENST00000527827 DNMT3BQ9UBC3 853 aaKnown RBP25.96■■□□□ 1.75
CPSF1-202ENST00000527827 DMXL1Q9Y485 3027 aa25.96■■□□□ 1.75
CPSF1-202ENST00000527827 B3GAT3O94766 335 aa25.95■■□□□ 1.74
CPSF1-202ENST00000527827 CLCNKBP51801 687 aa25.95■■□□□ 1.74
CPSF1-202ENST00000527827 PPP2R5AQ15172 486 aa25.95■■□□□ 1.74
CPSF1-202ENST00000527827 ECM1Q16610 540 aa25.95■■□□□ 1.74
CPSF1-202ENST00000527827 NPAS3Q8IXF0 933 aa25.95■■□□□ 1.74
CPSF1-202ENST00000527827 PATJQ8NI35 1801 aa25.95■■□□□ 1.74
CPSF1-202ENST00000527827 KANSL1LA0AUZ9 987 aa25.94■■□□□ 1.74
CPSF1-202ENST00000527827 TKTP29401 623 aaKnown RBP25.94■■□□□ 1.74
CPSF1-202ENST00000527827 ORC2Q13416 577 aaPredicted RBP25.94■■□□□ 1.74
CPSF1-202ENST00000527827 SAFBQ15424 915 aaKnown RBP eCLIP25.94■■□□□ 1.74
CPSF1-202ENST00000527827 ATF7IP2Q5U623 682 aa25.94■■□□□ 1.74
CPSF1-202ENST00000527827 C3orf58Q8NDZ4 430 aa25.94■■□□□ 1.74
CPSF1-202ENST00000527827 KXD1Q9BQD3 176 aa25.94■■□□□ 1.74
CPSF1-202ENST00000527827 GOLGA2P5Q9HBQ8 144 aa25.94■■□□□ 1.74
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms