RNA–Protein interactions for RNA: ENST00000527253.2

PRPF40B-204, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 3

Gene PRPF40B, Length 742 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-204ENST00000527253 MRPL4Q9BYD3 311 aaKnown RBP11.46□□□□□ -0.57
PRPF40B-204ENST00000527253 HAPLN2Q9GZV7 340 aa11.46□□□□□ -0.57
PRPF40B-204ENST00000527253 NT5C3AQ9H0P0 336 aa11.46□□□□□ -0.57
PRPF40B-204ENST00000527253 SMOC2Q9H3U7 446 aa11.46□□□□□ -0.57
PRPF40B-204ENST00000527253 SFXN1Q9H9B4 322 aa11.46□□□□□ -0.57
PRPF40B-204ENST00000527253 C17orf75Q9HAS0 396 aa11.46□□□□□ -0.57
PRPF40B-204ENST00000527253 GOLGA2P5Q9HBQ8 144 aa11.46□□□□□ -0.57
PRPF40B-204ENST00000527253 MAN1C1Q9NR34 630 aa11.46□□□□□ -0.57
PRPF40B-204ENST00000527253 FOXD4L1Q9NU39 408 aa11.46□□□□□ -0.57
PRPF40B-204ENST00000527253 SSX2IPQ9Y2D8 614 aa11.46□□□□□ -0.57
PRPF40B-204ENST00000527253 RBM19Q9Y4C8 960 aaKnown RBP11.46□□□□□ -0.57
PRPF40B-204ENST00000527253 C2orf16Q68DN1 1984 aa11.45□□□□□ -0.58
PRPF40B-204ENST00000527253 TMEM221A6NGB7 291 aa11.45□□□□□ -0.58
PRPF40B-204ENST00000527253 M0R296 226 aa11.45□□□□□ -0.58
PRPF40B-204ENST00000527253 ADAM12O43184 909 aa11.45□□□□□ -0.58
PRPF40B-204ENST00000527253 TGM5O43548 720 aa11.45□□□□□ -0.58
PRPF40B-204ENST00000527253 PAPLNO95428 1278 aa11.45□□□□□ -0.58
PRPF40B-204ENST00000527253 BRD1O95696 1058 aa11.45□□□□□ -0.58
PRPF40B-204ENST00000527253 GLUD1P00367 558 aa11.45□□□□□ -0.58
PRPF40B-204ENST00000527253 ADH1AP07327 375 aa11.45□□□□□ -0.58
PRPF40B-204ENST00000527253 MCF2P10911 925 aa11.45□□□□□ -0.58
PRPF40B-204ENST00000527253 PLCG1P19174 1290 aa11.45□□□□□ -0.58
PRPF40B-204ENST00000527253 UBA7P41226 1012 aa11.45□□□□□ -0.58
PRPF40B-204ENST00000527253 CLCNKBP51801 687 aa11.45□□□□□ -0.58
PRPF40B-204ENST00000527253 DHX8Q14562 1220 aaKnown RBP11.45□□□□□ -0.58
PRPF40B-204ENST00000527253 MCM6Q14566 821 aa11.45□□□□□ -0.58
PRPF40B-204ENST00000527253 ZNF568Q3ZCX4 644 aa11.45□□□□□ -0.58
PRPF40B-204ENST00000527253 SEZ6Q53EL9 994 aa11.45□□□□□ -0.58
PRPF40B-204ENST00000527253 SPECC1Q5M775 1068 aa11.45□□□□□ -0.58
PRPF40B-204ENST00000527253 MPZL3Q6UWV2 235 aa11.45□□□□□ -0.58
PRPF40B-204ENST00000527253 TMEM130Q8N3G9 435 aa11.45□□□□□ -0.58
PRPF40B-204ENST00000527253 C3orf58Q8NDZ4 430 aa11.45□□□□□ -0.58
PRPF40B-204ENST00000527253 CMASQ8NFW8 434 aaPredicted RBP11.45□□□□□ -0.58
PRPF40B-204ENST00000527253 ZNF707Q96C28 371 aaPredicted RBP11.45□□□□□ -0.58
PRPF40B-204ENST00000527253 ASIC4Q96FT7 647 aa11.45□□□□□ -0.58
PRPF40B-204ENST00000527253 CDK5RAP3Q96JB5 506 aa11.45□□□□□ -0.58
PRPF40B-204ENST00000527253 AK8Q96MA6 479 aa11.45□□□□□ -0.58
PRPF40B-204ENST00000527253 CLSTN3Q9BQT9 956 aa11.45□□□□□ -0.58
PRPF40B-204ENST00000527253 FNIP2Q9P278 1114 aa11.45□□□□□ -0.58
PRPF40B-204ENST00000527253 LIMD1Q9UGP4 676 aa11.45□□□□□ -0.58
PRPF40B-204ENST00000527253 MTMR6Q9Y217 621 aa11.45□□□□□ -0.58
PRPF40B-204ENST00000527253 VWA8A3KMH1 1905 aa11.45□□□□□ -0.58
PRPF40B-204ENST00000527253 SF3B1O75533 1304 aaKnown RBP eCLIP11.44□□□□□ -0.588e-6■■■■■ 107
PRPF40B-204ENST00000527253 DOCK6Q96HP0 2047 aa11.44□□□□□ -0.58
PRPF40B-204ENST00000527253 CCDC195A0A1B0GUA6 201 aa11.44□□□□□ -0.58
PRPF40B-204ENST00000527253 I3L4J1 428 aa11.44□□□□□ -0.58
PRPF40B-204ENST00000527253 SLC26A4O43511 780 aa11.44□□□□□ -0.58
PRPF40B-204ENST00000527253 N4BP1O75113 896 aaKnown RBP11.44□□□□□ -0.58
PRPF40B-204ENST00000527253 ASGR2P07307 311 aa11.44□□□□□ -0.58
PRPF40B-204ENST00000527253 HARSP12081 509 aaKnown RBP11.44□□□□□ -0.58
PRPF40B-204ENST00000527253 FGFR3P22607 806 aa11.44□□□□□ -0.58
PRPF40B-204ENST00000527253 MARCKSP29966 332 aaPredicted RBP11.44□□□□□ -0.58
PRPF40B-204ENST00000527253 LONP1P36776 959 aaKnown RBP11.44□□□□□ -0.58
PRPF40B-204ENST00000527253 NCKAP1LP55160 1127 aa11.44□□□□□ -0.58
PRPF40B-204ENST00000527253 UPP1Q16831 310 aa11.44□□□□□ -0.58
PRPF40B-204ENST00000527253 FAM171A1Q5VUB5 890 aa11.44□□□□□ -0.58
PRPF40B-204ENST00000527253 DCLRE1AQ6PJP8 1040 aa11.44□□□□□ -0.58
PRPF40B-204ENST00000527253 RSPO2Q6UXX9 243 aaPredicted RBP11.44□□□□□ -0.58
PRPF40B-204ENST00000527253 BMP8AQ7Z5Y6 402 aa11.44□□□□□ -0.58
PRPF40B-204ENST00000527253 GPBP1Q86WP2 473 aa11.44□□□□□ -0.58
PRPF40B-204ENST00000527253 CEP57Q86XR8 500 aa11.44□□□□□ -0.58
PRPF40B-204ENST00000527253 ZDHHC14Q8IZN3 488 aa11.44□□□□□ -0.58
PRPF40B-204ENST00000527253 KREMEN2Q8NCW0 462 aa11.44□□□□□ -0.58
PRPF40B-204ENST00000527253 RAD54LQ92698 747 aa11.44□□□□□ -0.58
PRPF40B-204ENST00000527253 EPSTI1Q96J88 318 aa11.44□□□□□ -0.58
PRPF40B-204ENST00000527253 SNX27Q96L92 541 aa11.44□□□□□ -0.58
PRPF40B-204ENST00000527253 CLIC6Q96NY7 704 aa11.44□□□□□ -0.58
PRPF40B-204ENST00000527253 FIZ1Q96SL8 496 aa11.44□□□□□ -0.58
PRPF40B-204ENST00000527253 REEP2Q9BRK0 252 aa11.44□□□□□ -0.58
PRPF40B-204ENST00000527253 TCHPQ9BT92 498 aa11.44□□□□□ -0.58
PRPF40B-204ENST00000527253 TTPALQ9BTX7 342 aa11.44□□□□□ -0.58
PRPF40B-204ENST00000527253 CCDC94Q9BW85 323 aaPredicted RBP11.44□□□□□ -0.58
PRPF40B-204ENST00000527253 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP11.44□□□□□ -0.58
PRPF40B-204ENST00000527253 KCND2Q9NZV8 630 aa11.44□□□□□ -0.58
PRPF40B-204ENST00000527253 FBXO2Q9UK22 296 aaPredicted RBP11.44□□□□□ -0.58
PRPF40B-204ENST00000527253 HCN4Q9Y3Q4 1203 aa11.44□□□□□ -0.58
PRPF40B-204ENST00000527253 NR2E1Q9Y466 385 aa11.44□□□□□ -0.58
PRPF40B-204ENST00000527253 MYH11P35749 1972 aa11.44□□□□□ -0.58
PRPF40B-204ENST00000527253 DENND4AQ7Z401 1863 aa11.44□□□□□ -0.58
PRPF40B-204ENST00000527253 MTCL1Q9Y4B5 1905 aaKnown RBP11.43□□□□□ -0.58
PRPF40B-204ENST00000527253 TMEM189-UBE2V1I3L0A0 370 aa11.43□□□□□ -0.58
PRPF40B-204ENST00000527253 TOM1L1O75674 476 aa11.43□□□□□ -0.58
PRPF40B-204ENST00000527253 B3GAT3O94766 335 aa11.43□□□□□ -0.58
PRPF40B-204ENST00000527253 BMP15O95972 392 aa11.43□□□□□ -0.58
PRPF40B-204ENST00000527253 C1RP00736 705 aa11.43□□□□□ -0.58
PRPF40B-204ENST00000527253 KCNE1P15382 129 aa11.43□□□□□ -0.58
PRPF40B-204ENST00000527253 PDCP20941 246 aa11.43□□□□□ -0.58
PRPF40B-204ENST00000527253 PLA2G5P39877 138 aa11.43□□□□□ -0.58
PRPF40B-204ENST00000527253 BRCC3P46736 316 aa11.43□□□□□ -0.58
PRPF40B-204ENST00000527253 ZNF131P52739 623 aa11.43□□□□□ -0.58
PRPF40B-204ENST00000527253 SIGLEC14Q08ET2 396 aa11.43□□□□□ -0.58
PRPF40B-204ENST00000527253 SLC10A6Q3KNW5 377 aa11.43□□□□□ -0.58
PRPF40B-204ENST00000527253 C15orf39Q6ZRI6 1047 aa11.43□□□□□ -0.58
PRPF40B-204ENST00000527253 HAUS6Q7Z4H7 955 aa11.43□□□□□ -0.58
PRPF40B-204ENST00000527253 HDAC7Q8WUI4 952 aa11.43□□□□□ -0.58
PRPF40B-204ENST00000527253 PIK3R5Q8WYR1 880 aa11.43□□□□□ -0.58
PRPF40B-204ENST00000527253 KCNN1Q92952 543 aa11.43□□□□□ -0.58
PRPF40B-204ENST00000527253 C18orf25Q96B23 403 aaPredicted RBP11.43□□□□□ -0.58
PRPF40B-204ENST00000527253 CALML4Q96GE6 196 aa11.43□□□□□ -0.58
PRPF40B-204ENST00000527253 INTS4Q96HW7 963 aaKnown RBP11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms