RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), human

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-223	ENST00000526553	NPIPB8	E9PQR5	432 aa		6.23	□□□□□ -1.41
CD44-223	ENST00000526553	HTRA2	O43464	458 aa	Predicted RBP	6.23	□□□□□ -1.41
CD44-223	ENST00000526553	SGTA	O43765	313 aa		6.23	□□□□□ -1.41
CD44-223	ENST00000526553	FAM20B	O75063	409 aa		6.23	□□□□□ -1.41
CD44-223	ENST00000526553	AMY1A	P04745	511 aa		6.23	□□□□□ -1.41
CD44-223	ENST00000526553	ATP5J	P18859	108 aa		6.23	□□□□□ -1.41
CD44-223	ENST00000526553	FPR1	P21462	350 aa		6.23	□□□□□ -1.41
CD44-223	ENST00000526553	PCSK1	P29120	753 aa		6.23	□□□□□ -1.41
CD44-223	ENST00000526553	ATP8B2	P98198	1209 aa		6.23	□□□□□ -1.41
CD44-223	ENST00000526553	KIF23	Q02241	960 aa	Predicted RBP	6.23	□□□□□ -1.41
CD44-223	ENST00000526553	ODF1	Q14990	250 aa		6.23	□□□□□ -1.41
CD44-223	ENST00000526553	SEM1	Q6ZVN7	128 aa		6.23	□□□□□ -1.41
CD44-223	ENST00000526553	RNF169	Q8NCN4	708 aa		6.23	□□□□□ -1.41
CD44-223	ENST00000526553	CPT1C	Q8TCG5	803 aa		6.23	□□□□□ -1.41
CD44-223	ENST00000526553	CCHCR1	Q8TD31	782 aa		6.23	□□□□□ -1.41
CD44-223	ENST00000526553	ZNF483	Q8TF39	744 aa	Predicted RBP	6.23	□□□□□ -1.41
CD44-223	ENST00000526553	COA7	Q96BR5	231 aa		6.23	□□□□□ -1.41
CD44-223	ENST00000526553	DDX56	Q9NY93	547 aa	Known RBP	6.23	□□□□□ -1.41
CD44-223	ENST00000526553	POGK	Q9P215	609 aa		6.23	□□□□□ -1.41
CD44-223	ENST00000526553	CHST2	Q9Y4C5	530 aa		6.23	□□□□□ -1.41
CD44-223	ENST00000526553	LEFTY2	O00292	366 aa		6.22	□□□□□ -1.41
CD44-223	ENST00000526553	NARS	O43776	548 aa	Known RBP	6.22	□□□□□ -1.41
CD44-223	ENST00000526553	SCAF4	O95104	1147 aa	Known RBP	6.22	□□□□□ -1.41
CD44-223	ENST00000526553	ZNF202	O95125	648 aa		6.22	□□□□□ -1.41
CD44-223	ENST00000526553	ZRANB2	O95218	330 aa	Known RBP eCLIP	6.22	□□□□□ -1.41
CD44-223	ENST00000526553	NEK2	P51955	445 aa		6.22	□□□□□ -1.41
CD44-223	ENST00000526553	CDC42EP1	Q00587	391 aa		6.22	□□□□□ -1.41
CD44-223	ENST00000526553	NHLH2	Q02577	135 aa		6.22	□□□□□ -1.41
CD44-223	ENST00000526553	FNDC7	Q5VTL7	733 aa		6.22	□□□□□ -1.41
CD44-223	ENST00000526553	USP51	Q70EK9	711 aa		6.22	□□□□□ -1.41
CD44-223	ENST00000526553	GDF7	Q7Z4P5	450 aa		6.22	□□□□□ -1.41
CD44-223	ENST00000526553	ZBTB46	Q86UZ6	589 aa		6.22	□□□□□ -1.41
CD44-223	ENST00000526553	RHOT1	Q8IXI2	618 aa		6.22	□□□□□ -1.41
CD44-223	ENST00000526553	ZNF276	Q8N554	614 aa		6.22	□□□□□ -1.41
CD44-223	ENST00000526553	ZGPAT	Q8N5A5	531 aa	Known RBP	6.22	□□□□□ -1.41
CD44-223	ENST00000526553	SLC25A43	Q8WUT9	341 aa	Predicted RBP	6.22	□□□□□ -1.41
CD44-223	ENST00000526553	STAG1	Q8WVM7	1258 aa		6.22	□□□□□ -1.41
CD44-223	ENST00000526553	STON2	Q8WXE9	905 aa		6.22	□□□□□ -1.41
CD44-223	ENST00000526553	SLC46A2	Q9BY10	475 aa		6.22	□□□□□ -1.41
CD44-223	ENST00000526553	KRTAP4-11	Q9BYQ6	195 aa		6.22	□□□□□ -1.41
CD44-223	ENST00000526553	LIMCH1	Q9UPQ0	1083 aa		6.22	□□□□□ -1.41
CD44-223	ENST00000526553	ACTL7A	Q9Y615	435 aa		6.22	□□□□□ -1.41
CD44-223	ENST00000526553	PNPLA7	Q6ZV29	1317 aa		6.22	□□□□□ -1.41
CD44-223	ENST00000526553	MYBBP1A	Q9BQG0	1328 aa	Known RBP	6.22	□□□□□ -1.41
CD44-223	ENST00000526553	CCDC154	A6NI56	674 aa		6.21	□□□□□ -1.42
CD44-223	ENST00000526553	PPFIA4	O75335	1185 aa		6.21	□□□□□ -1.42
CD44-223	ENST00000526553	SNUPN	O95149	360 aa	Known RBP	6.21	□□□□□ -1.42
CD44-223	ENST00000526553	HMGB1	P09429	215 aa	Known RBP	6.21	□□□□□ -1.42
CD44-223	ENST00000526553	PDGFRB	P09619	1106 aa		6.21	□□□□□ -1.42
CD44-223	ENST00000526553	ZSCAN20	P17040	1043 aa	Predicted RBP	6.21	□□□□□ -1.42
CD44-223	ENST00000526553	DDC	P20711	480 aa		6.21	□□□□□ -1.42
CD44-223	ENST00000526553	EDNRB	P24530	442 aa		6.21	□□□□□ -1.42
CD44-223	ENST00000526553	PTGS2	P35354	604 aa		6.21	□□□□□ -1.42
CD44-223	ENST00000526553	ACVRL1	P37023	503 aa		6.21	□□□□□ -1.42
CD44-223	ENST00000526553	GDF5	P43026	501 aa		6.21	□□□□□ -1.42
CD44-223	ENST00000526553	PPP4R3A	Q6IN85	833 aa		6.21	□□□□□ -1.42
CD44-223	ENST00000526553	PLXDC1	Q8IUK5	500 aa		6.21	□□□□□ -1.42
CD44-223	ENST00000526553	CMTR2	Q8IYT2	770 aa	Known RBP	6.21	□□□□□ -1.42
CD44-223	ENST00000526553	LENG9	Q96B70	501 aa		6.21	□□□□□ -1.42
CD44-223	ENST00000526553	FAM193B	Q96PV7	902 aa	Predicted RBP	6.21	□□□□□ -1.42
CD44-223	ENST00000526553	TDP1	Q9NUW8	608 aa		6.21	□□□□□ -1.42
CD44-223	ENST00000526553	GPRC5B	Q9NZH0	403 aa		6.21	□□□□□ -1.42
CD44-223	ENST00000526553	NIPSNAP3A	Q9UFN0	247 aa	Predicted RBP	6.21	□□□□□ -1.42
CD44-223	ENST00000526553	SLC23A1	Q9UHI7	598 aa		6.21	□□□□□ -1.42
CD44-223	ENST00000526553	SERPINB13	Q9UIV8	391 aa		6.21	□□□□□ -1.42
CD44-223	ENST00000526553	GAGE12B	A1L429	117 aa		6.2	□□□□□ -1.42
CD44-223	ENST00000526553	GAGE12H	A6NDE8	117 aa		6.2	□□□□□ -1.42
CD44-223	ENST00000526553	DRGX	A6NNA5	263 aa		6.2	□□□□□ -1.42
CD44-223	ENST00000526553	AHRR	A9YTQ3	701 aa		6.2	□□□□□ -1.42
CD44-223	ENST00000526553	POMC	P01189	267 aa		6.2	□□□□□ -1.42
CD44-223	ENST00000526553	SPATA31D3	P0C874	917 aa		6.2	□□□□□ -1.42
CD44-223	ENST00000526553	MCM7	P33993	719 aa		6.2	□□□□□ -1.42
CD44-223	ENST00000526553	RNASE9	P60153	205 aa	Known RBP	6.2	□□□□□ -1.42
CD44-223	ENST00000526553	CTXN1	P60606	82 aa		6.2	□□□□□ -1.42
CD44-223	ENST00000526553	RAP2B	P61225	183 aa		6.2	□□□□□ -1.42
CD44-223	ENST00000526553	ABHD18	Q0P651	414 aa		6.2	□□□□□ -1.42
CD44-223	ENST00000526553	TARDBP	Q13148	414 aa	Known RBP eCLIP	6.2	□□□□□ -1.42
CD44-223	ENST00000526553	ATP2B3	Q16720	1220 aa		6.2	□□□□□ -1.42
CD44-223	ENST00000526553	DACT2	Q5SW24	774 aa		6.2	□□□□□ -1.42
CD44-223	ENST00000526553	FAM102A	Q5T9C2	384 aa	Predicted RBP	6.2	□□□□□ -1.42
CD44-223	ENST00000526553	METRNL	Q641Q3	311 aa		6.2	□□□□□ -1.42
CD44-223	ENST00000526553	IGFL4	Q6B9Z1	124 aa		6.2	□□□□□ -1.42
CD44-223	ENST00000526553	SPATA31D4	Q6ZUB0	917 aa		6.2	□□□□□ -1.42
CD44-223	ENST00000526553	RHOU	Q7L0Q8	258 aa		6.2	□□□□□ -1.42
CD44-223	ENST00000526553	MIER2	Q8N344	545 aa		6.2	□□□□□ -1.42
CD44-223	ENST00000526553	CEP89	Q96ST8	783 aa		6.2	□□□□□ -1.42
CD44-223	ENST00000526553	TRPM5	Q9NZQ8	1165 aa		6.2	□□□□□ -1.42
CD44-223	ENST00000526553	CFAP20	Q9Y6A4	193 aa	Known RBP	6.2	□□□□□ -1.42
CD44-223	ENST00000526553	CYR61	O00622	381 aa		6.19	□□□□□ -1.42
CD44-223	ENST00000526553	ALAS1	P13196	640 aa		6.19	□□□□□ -1.42
CD44-223	ENST00000526553	MAK	P20794	623 aa		6.19	□□□□□ -1.42
CD44-223	ENST00000526553	NR4A1	P22736	598 aa		6.19	□□□□□ -1.42
CD44-223	ENST00000526553	CHN2	P52757	468 aa		6.19	□□□□□ -1.42
CD44-223	ENST00000526553	PTTG1IP	P53801	180 aa		6.19	□□□□□ -1.42
CD44-223	ENST00000526553	RAB39A	Q14964	217 aa		6.19	□□□□□ -1.42
CD44-223	ENST00000526553	UAP1L1	Q3KQV9	507 aa		6.19	□□□□□ -1.42
CD44-223	ENST00000526553	C3orf36	Q3SXR2	165 aa		6.19	□□□□□ -1.42
CD44-223	ENST00000526553	AGAP9	Q5VTM2	703 aa		6.19	□□□□□ -1.42
CD44-223	ENST00000526553	ZNF529	Q6P280	563 aa		6.19	□□□□□ -1.42
CD44-223	ENST00000526553	CPA6	Q8N4T0	437 aa		6.19	□□□□□ -1.42

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