RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 DLATP10515 647 aaKnown RBP22.76■■□□□ 1.23
VPS28-205ENST00000526204 OAZ1P54368 228 aa22.76■■□□□ 1.23
VPS28-205ENST00000526204 ARMC9Q7Z3E5 817 aa22.76■■□□□ 1.23
VPS28-205ENST00000526204 PDLIM7Q9NR12 457 aa22.76■■□□□ 1.23
VPS28-205ENST00000526204 CNOT8Q9UFF9 292 aaKnown RBP22.76■■□□□ 1.23
VPS28-205ENST00000526204 PASKQ96RG2 1323 aa22.75■■□□□ 1.23
VPS28-205ENST00000526204 STBD1O95210 358 aa22.75■■□□□ 1.23
VPS28-205ENST00000526204 KCNA2P16389 499 aa22.75■■□□□ 1.23
VPS28-205ENST00000526204 BTBD6Q96KE9 485 aa22.75■■□□□ 1.23
VPS28-205ENST00000526204 LRRC19Q9H756 370 aa22.75■■□□□ 1.23
VPS28-205ENST00000526204 NFASCO94856 1347 aa22.75■■□□□ 1.23
VPS28-205ENST00000526204 KRT5P13647 590 aa22.75■■□□□ 1.23
VPS28-205ENST00000526204 RPS12P25398 132 aaKnown RBP22.75■■□□□ 1.23
VPS28-205ENST00000526204 LIG3P49916 1009 aa22.75■■□□□ 1.23
VPS28-205ENST00000526204 BACE1P56817 501 aa22.75■■□□□ 1.23
VPS28-205ENST00000526204 SWSAP1Q6NVH7 229 aa22.75■■□□□ 1.23
VPS28-205ENST00000526204 ZNF677Q86XU0 584 aa22.75■■□□□ 1.23
VPS28-205ENST00000526204 TATDN2Q93075 761 aa22.75■■□□□ 1.23
VPS28-205ENST00000526204 CYFIP2Q96F07 1278 aa22.75■■□□□ 1.23
VPS28-205ENST00000526204 TRIM11Q96F44 468 aa22.75■■□□□ 1.23
VPS28-205ENST00000526204 BICD1Q96G01 975 aa22.75■■□□□ 1.23
VPS28-205ENST00000526204 C1orf112Q9NSG2 853 aa22.75■■□□□ 1.23
VPS28-205ENST00000526204 RIPK3Q9Y572 518 aa22.75■■□□□ 1.23
VPS28-205ENST00000526204 MYBL1P10243 752 aa22.74■■□□□ 1.23
VPS28-205ENST00000526204 RARAP10276 462 aa22.74■■□□□ 1.23
VPS28-205ENST00000526204 TMOD1P28289 359 aa22.74■■□□□ 1.23
VPS28-205ENST00000526204 BPIFB4P59827 614 aa22.74■■□□□ 1.23
VPS28-205ENST00000526204 PACS2Q86VP3 889 aa22.74■■□□□ 1.23
VPS28-205ENST00000526204 SLCO2A1Q92959 643 aa22.74■■□□□ 1.23
VPS28-205ENST00000526204 CENPTQ96BT3 561 aa22.74■■□□□ 1.23
VPS28-205ENST00000526204 ATP6V0A4Q9HBG4 840 aa22.74■■□□□ 1.23
VPS28-205ENST00000526204 AS3MTQ9HBK9 375 aa22.74■■□□□ 1.23
VPS28-205ENST00000526204 JPH1Q9HDC5 661 aaPredicted RBP22.74■■□□□ 1.23
VPS28-205ENST00000526204 AVENQ9NQS1 362 aaPredicted RBP22.74■■□□□ 1.23
VPS28-205ENST00000526204 FSCN2O14926 492 aa22.73■■□□□ 1.23
VPS28-205ENST00000526204 CAND2O75155 1236 aa22.73■■□□□ 1.23
VPS28-205ENST00000526204 STAM2O75886 525 aa22.73■■□□□ 1.23
VPS28-205ENST00000526204 SCP2P22307 547 aa22.73■■□□□ 1.23
VPS28-205ENST00000526204 SIX1Q15475 284 aaPredicted RBP22.73■■□□□ 1.23
VPS28-205ENST00000526204 MAIP1Q8WWC4 291 aa22.73■■□□□ 1.23
VPS28-205ENST00000526204 DHX38Q92620 1227 aaKnown RBP22.73■■□□□ 1.23
VPS28-205ENST00000526204 ART4Q93070 314 aa22.73■■□□□ 1.23
VPS28-205ENST00000526204 RNF25Q96BH1 459 aaPredicted RBP22.73■■□□□ 1.23
VPS28-205ENST00000526204 FAM213AQ9BRX8 229 aa22.73■■□□□ 1.23
VPS28-205ENST00000526204 TMEM109Q9BVC6 243 aa22.73■■□□□ 1.23
VPS28-205ENST00000526204 CYP26B1Q9NR63 512 aa22.73■■□□□ 1.23
VPS28-205ENST00000526204 ARHGAP28Q9P2N2 729 aa22.73■■□□□ 1.23
VPS28-205ENST00000526204 PCDHB2Q9Y5E7 798 aa22.73■■□□□ 1.23
VPS28-205ENST00000526204 ADGRA3Q8IWK6 1321 aa22.73■■□□□ 1.23
VPS28-205ENST00000526204 DCDC2CA8MYV0 355 aa22.73■■□□□ 1.23
VPS28-205ENST00000526204 ECEL1O95672 775 aa22.73■■□□□ 1.23
VPS28-205ENST00000526204 SHBGP04278 402 aa22.73■■□□□ 1.23
VPS28-205ENST00000526204 MAPK4P31152 587 aa22.73■■□□□ 1.23
VPS28-205ENST00000526204 SOX10P56693 466 aa22.73■■□□□ 1.23
VPS28-205ENST00000526204 CLDN10P78369 228 aa22.73■■□□□ 1.23
VPS28-205ENST00000526204 ADCY2Q08462 1091 aa22.73■■□□□ 1.23
VPS28-205ENST00000526204 C6orf118Q5T5N4 469 aa22.73■■□□□ 1.23
VPS28-205ENST00000526204 DCAF15Q66K64 600 aa22.73■■□□□ 1.23
VPS28-205ENST00000526204 C15orf39Q6ZRI6 1047 aa22.73■■□□□ 1.23
VPS28-205ENST00000526204 PSPC1Q8WXF1 523 aaKnown RBP22.73■■□□□ 1.23
VPS28-205ENST00000526204 SLC9A2Q9UBY0 812 aa22.73■■□□□ 1.23
VPS28-205ENST00000526204 TCRBV7S2A1N4TA0A589 114 aa22.72■■□□□ 1.23
VPS28-205ENST00000526204 EXTL3O43909 919 aa22.72■■□□□ 1.23
VPS28-205ENST00000526204 RARGP13631 454 aa22.72■■□□□ 1.23
VPS28-205ENST00000526204 SLC1A1P43005 524 aa22.72■■□□□ 1.23
VPS28-205ENST00000526204 SLC29A2Q14542 456 aa22.72■■□□□ 1.23
VPS28-205ENST00000526204 WDR44Q5JSH3 913 aa22.72■■□□□ 1.23
VPS28-205ENST00000526204 SNRNP48Q6IEG0 339 aaKnown RBP22.72■■□□□ 1.23
VPS28-205ENST00000526204 RAPGEF5Q92565 580 aa22.72■■□□□ 1.23
VPS28-205ENST00000526204 MAF1Q9H063 256 aa22.72■■□□□ 1.23
VPS28-205ENST00000526204 XPNPEP1Q9NQW7 623 aa22.72■■□□□ 1.23
VPS28-205ENST00000526204 UNGP13051 313 aaPredicted RBP22.72■■□□□ 1.23
VPS28-205ENST00000526204 SCYL3Q8IZE3 742 aa22.72■■□□□ 1.23
VPS28-205ENST00000526204 REPS2Q8NFH8 660 aa22.72■■□□□ 1.23
VPS28-205ENST00000526204 WNK4Q96J92 1243 aa22.72■■□□□ 1.23
VPS28-205ENST00000526204 PDGFDQ9GZP0 370 aaPredicted RBP22.72■■□□□ 1.23
VPS28-205ENST00000526204 STMN4Q9H169 189 aaPredicted RBP22.72■■□□□ 1.23
VPS28-205ENST00000526204 SEPT9Q9UHD8 586 aaPredicted RBP22.72■■□□□ 1.23
VPS28-205ENST00000526204 ANAPC7Q9UJX3 599 aa22.72■■□□□ 1.23
VPS28-205ENST00000526204 PRKCEQ02156 737 aa22.71■■□□□ 1.23
VPS28-205ENST00000526204 CALCOCO2Q13137 446 aa22.71■■□□□ 1.23
VPS28-205ENST00000526204 PSMD6Q15008 389 aa22.71■■□□□ 1.23
VPS28-205ENST00000526204 MCOLN2Q8IZK6 566 aa22.71■■□□□ 1.23
VPS28-205ENST00000526204 ZNF280CQ8ND82 737 aa22.71■■□□□ 1.23
VPS28-205ENST00000526204 SEMA4AQ9H3S1 761 aa22.71■■□□□ 1.23
VPS28-205ENST00000526204 PIM2Q9P1W9 311 aa22.71■■□□□ 1.23
VPS28-205ENST00000526204 SBDSQ9Y3A5 250 aaKnown RBP eCLIP22.71■■□□□ 1.23
VPS28-205ENST00000526204 RGS16O15492 202 aaPredicted RBP22.7■■□□□ 1.23
VPS28-205ENST00000526204 RGS20O76081 388 aa22.7■■□□□ 1.23
VPS28-205ENST00000526204 EGFRP00533 1210 aa22.7■■□□□ 1.23
VPS28-205ENST00000526204 MAN1A1P33908 653 aa22.7■■□□□ 1.23
VPS28-205ENST00000526204 LIG4P49917 911 aa22.7■■□□□ 1.23
VPS28-205ENST00000526204 ACTR2P61160 394 aa22.7■■□□□ 1.23
VPS28-205ENST00000526204 GNPTABQ3T906 1256 aa22.7■■□□□ 1.23
VPS28-205ENST00000526204 XKR3Q5GH77 459 aa22.7■■□□□ 1.23
VPS28-205ENST00000526204 MIS18BP1Q6P0N0 1132 aa22.7■■□□□ 1.23
VPS28-205ENST00000526204 C6orf89Q6UWU4 347 aa22.7■■□□□ 1.23
VPS28-205ENST00000526204 ABHD15Q6UXT9 468 aa22.7■■□□□ 1.23
VPS28-205ENST00000526204 SYDE1Q6ZW31 735 aaPredicted RBP22.7■■□□□ 1.23
VPS28-205ENST00000526204 CPNE8Q86YQ8 564 aa22.7■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms