RNA–Protein interactions for RNA: ENST00000525078.1

USP47-204, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 1 (best)

Gene USP47, Length 978 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-204ENST00000525078 HTRA4P83105 476 aaPredicted RBP6.16□□□□□ -1.42
USP47-204ENST00000525078 FOXO4P98177 505 aa6.16□□□□□ -1.42
USP47-204ENST00000525078 ROM1Q03395 351 aa6.16□□□□□ -1.42
USP47-204ENST00000525078 MAP3K12Q12852 859 aa6.16□□□□□ -1.42
USP47-204ENST00000525078 SMAD1Q15797 465 aaKnown RBP6.16□□□□□ -1.42
USP47-204ENST00000525078 TBC1D10BQ4KMP7 808 aaPredicted RBP6.16□□□□□ -1.42
USP47-204ENST00000525078 MROH9Q5TGP6 573 aa6.16□□□□□ -1.42
USP47-204ENST00000525078 PRAMEF18Q5VWM3 479 aa6.16□□□□□ -1.42
USP47-204ENST00000525078 STEAP3Q658P3 488 aa6.16□□□□□ -1.42
USP47-204ENST00000525078 TANGO2Q6ICL3 276 aa6.16□□□□□ -1.42
USP47-204ENST00000525078 LIN54Q6MZP7 749 aa6.16□□□□□ -1.42
USP47-204ENST00000525078 LYPD4Q6UWN0 246 aa6.16□□□□□ -1.42
USP47-204ENST00000525078 RNF111Q6ZNA4 994 aa6.16□□□□□ -1.42
USP47-204ENST00000525078 RNF44Q7L0R7 432 aa6.16□□□□□ -1.42
USP47-204ENST00000525078 ZC3HAV1Q7Z2W4 902 aaKnown RBP6.16□□□□□ -1.42
USP47-204ENST00000525078 RSPH3Q86UC2 560 aa6.16□□□□□ -1.42
USP47-204ENST00000525078 SIAH1Q8IUQ4 282 aa6.16□□□□□ -1.42
USP47-204ENST00000525078 CCDC117Q8IWD4 279 aaPredicted RBP6.16□□□□□ -1.42
USP47-204ENST00000525078 DZIP1LQ8IYY4 767 aaKnown RBP6.16□□□□□ -1.42
USP47-204ENST00000525078 NRSN1Q8IZ57 195 aa6.16□□□□□ -1.42
USP47-204ENST00000525078 AGGF1Q8N302 714 aaeCLIP6.16□□□□□ -1.42
USP47-204ENST00000525078 ZMIZ2Q8NF64 920 aa6.16□□□□□ -1.42
USP47-204ENST00000525078 NLGN2Q8NFZ4 835 aa6.16□□□□□ -1.42
USP47-204ENST00000525078 OR2I1PQ8NGU4 316 aa6.16□□□□□ -1.42
USP47-204ENST00000525078 STT3BQ8TCJ2 826 aa6.16□□□□□ -1.42
USP47-204ENST00000525078 BRIX1Q8TDN6 353 aaKnown RBP6.16□□□□□ -1.42
USP47-204ENST00000525078 GAB3Q8WWW8 586 aa6.16□□□□□ -1.42
USP47-204ENST00000525078 COG8Q96MW5 612 aa6.16□□□□□ -1.42
USP47-204ENST00000525078 BAG1Q99933 345 aaPredicted RBP6.16□□□□□ -1.42
USP47-204ENST00000525078 PAIP1Q9H074 479 aaKnown RBP6.16□□□□□ -1.42
USP47-204ENST00000525078 DUSP15Q9H1R2 295 aaPredicted RBP6.16□□□□□ -1.42
USP47-204ENST00000525078 RBM12Q9NTZ6 932 aaKnown RBP6.16□□□□□ -1.42
USP47-204ENST00000525078 VPS28Q9UK41 221 aa6.16□□□□□ -1.42
USP47-204ENST00000525078 FEM1BQ9UK73 627 aa6.16□□□□□ -1.42
USP47-204ENST00000525078 RWDD3Q9Y3V2 267 aa6.16□□□□□ -1.42
USP47-204ENST00000525078 SNX5Q9Y5X3 404 aa6.16□□□□□ -1.42
USP47-204ENST00000525078 PI4KAP2A4QPH2 592 aa6.15□□□□□ -1.42
USP47-204ENST00000525078 GOLGA6L22H0YM25 854 aa6.15□□□□□ -1.42
USP47-204ENST00000525078 SGTAO43765 313 aa6.15□□□□□ -1.42
USP47-204ENST00000525078 FSBPO95073 299 aa6.15□□□□□ -1.42
USP47-204ENST00000525078 ADAMTS2O95450 1211 aa6.15□□□□□ -1.42
USP47-204ENST00000525078 NDST3O95803 873 aa6.15□□□□□ -1.42
USP47-204ENST00000525078 PRLP01236 227 aa6.15□□□□□ -1.42
USP47-204ENST00000525078 CELA3BP08861 270 aa6.15□□□□□ -1.42
USP47-204ENST00000525078 RARBP10826 455 aa6.15□□□□□ -1.42
USP47-204ENST00000525078 SRFP11831 508 aa6.15□□□□□ -1.42
USP47-204ENST00000525078 SYN1P17600 705 aa6.15□□□□□ -1.42
USP47-204ENST00000525078 ACTN2P35609 894 aa6.15□□□□□ -1.42
USP47-204ENST00000525078 VAMP2P63027 116 aa6.15□□□□□ -1.42
USP47-204ENST00000525078 MGAT2Q10469 447 aa6.15□□□□□ -1.42
USP47-204ENST00000525078 CHRNA2Q15822 529 aa6.15□□□□□ -1.42
USP47-204ENST00000525078 RRAGBQ5VZM2 374 aa6.15□□□□□ -1.42
USP47-204ENST00000525078 BORAQ6PGQ7 559 aa6.15□□□□□ -1.42
USP47-204ENST00000525078 ZPBP2Q6X784 338 aa6.15□□□□□ -1.42
USP47-204ENST00000525078 GADL1Q6ZQY3 521 aa6.15□□□□□ -1.42
USP47-204ENST00000525078 CATSPERGQ6ZRH7 1159 aa6.15□□□□□ -1.42
USP47-204ENST00000525078 TSPYL5Q86VY4 417 aaPredicted RBP6.15□□□□□ -1.42
USP47-204ENST00000525078 CELF5Q8N6W0 485 aaKnown RBP6.15□□□□□ -1.42
USP47-204ENST00000525078 ZNF713Q8N859 430 aaPredicted RBP6.15□□□□□ -1.42
USP47-204ENST00000525078 ARL10Q8N8L6 244 aa6.15□□□□□ -1.42
USP47-204ENST00000525078 CCDC191Q8NCU4 936 aa6.15□□□□□ -1.42
USP47-204ENST00000525078 OTUD7AQ8TE49 926 aaPredicted RBP6.15□□□□□ -1.42
USP47-204ENST00000525078 ADAMTS15Q8TE58 950 aa6.15□□□□□ -1.42
USP47-204ENST00000525078 AFAP1L1Q8TED9 768 aa6.15□□□□□ -1.42
USP47-204ENST00000525078 FOXRED1Q96CU9 486 aaPredicted RBP6.15□□□□□ -1.42
USP47-204ENST00000525078 SCARF2Q96GP6 870 aaPredicted RBP6.15□□□□□ -1.42
USP47-204ENST00000525078 ASB2Q96Q27 587 aa6.15□□□□□ -1.42
USP47-204ENST00000525078 PRPF18Q99633 342 aaKnown RBP6.15□□□□□ -1.42
USP47-204ENST00000525078 SLF1Q9BQI6 1058 aa6.15□□□□□ -1.42
USP47-204ENST00000525078 GHITMQ9H3K2 345 aa6.15□□□□□ -1.42
USP47-204ENST00000525078 EPB41L4AQ9HCS5 686 aaPredicted RBP6.15□□□□□ -1.42
USP47-204ENST00000525078 IGSF9Q9P2J2 1179 aa6.15□□□□□ -1.42
USP47-204ENST00000525078 TBC1D29Q9UFV1 150 aa6.15□□□□□ -1.42
USP47-204ENST00000525078 ASB1Q9Y576 335 aa6.15□□□□□ -1.42
USP47-204ENST00000525078 CAPN6Q9Y6Q1 641 aa6.15□□□□□ -1.42
USP47-204ENST00000525078 TBC1D4O60343 1298 aa6.14□□□□□ -1.43
USP47-204ENST00000525078 MT-ND5P03915 603 aa6.14□□□□□ -1.43
USP47-204ENST00000525078 HNRNPCP07910 306 aaKnown RBP eCLIP6.14□□□□□ -1.43
USP47-204ENST00000525078 ITGA2BP08514 1039 aa6.14□□□□□ -1.43
USP47-204ENST00000525078 FAM87AP0C7U9 286 aa6.14□□□□□ -1.43
USP47-204ENST00000525078 RPL10P27635 214 aaKnown RBP6.14□□□□□ -1.43
USP47-204ENST00000525078 LTKP29376 864 aa6.14□□□□□ -1.43
USP47-204ENST00000525078 CLK1P49759 484 aaKnown RBP6.14□□□□□ -1.43
USP47-204ENST00000525078 EPHA5P54756 1037 aa6.14□□□□□ -1.43
USP47-204ENST00000525078 POLE2P56282 527 aa6.14□□□□□ -1.43
USP47-204ENST00000525078 HERVK_113P62684 666 aa6.14□□□□□ -1.43
USP47-204ENST00000525078 KRT83P78385 493 aa6.14□□□□□ -1.43
USP47-204ENST00000525078 CDC42EP1Q00587 391 aa6.14□□□□□ -1.43
USP47-204ENST00000525078 CUL4AQ13619 759 aa6.14□□□□□ -1.43
USP47-204ENST00000525078 EFR3AQ14156 821 aa6.14□□□□□ -1.43
USP47-204ENST00000525078 RILPL1Q5EBL4 403 aa6.14□□□□□ -1.43
USP47-204ENST00000525078 SLC30A6Q6NXT4 461 aa6.14□□□□□ -1.43
USP47-204ENST00000525078 ILDR2Q71H61 639 aa6.14□□□□□ -1.43
USP47-204ENST00000525078 B4GALNT4Q76KP1 1039 aa6.14□□□□□ -1.43
USP47-204ENST00000525078 GATAD2AQ86YP4 633 aa6.14□□□□□ -1.43
USP47-204ENST00000525078 HERC6Q8IVU3 1022 aa6.14□□□□□ -1.43
USP47-204ENST00000525078 FMR1NBQ8N0W7 255 aaPredicted RBP6.14□□□□□ -1.43
USP47-204ENST00000525078 LZTR1Q8N653 840 aa6.14□□□□□ -1.43
USP47-204ENST00000525078 CDYL2Q8N8U2 506 aa6.14□□□□□ -1.43
USP47-204ENST00000525078 GALNT6Q8NCL4 622 aa6.14□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms