RNA–Protein interactions for RNA: ENST00000515562.1

DDX41-217, Transcript of DEAD-box helicase 41, humanhuman

TSL 1 (best)

Gene DDX41, Length 1,184 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-217ENST00000515562 TTPALQ9BTX7 342 aa19.2■□□□□ 0.66
DDX41-217ENST00000515562 CCDC94Q9BW85 323 aaPredicted RBP19.2■□□□□ 0.66
DDX41-217ENST00000515562 TMEM189-UBE2V1I3L0A0 370 aa19.19■□□□□ 0.66
DDX41-217ENST00000515562 TGM5O43548 720 aa19.19■□□□□ 0.66
DDX41-217ENST00000515562 PAPLNO95428 1278 aa19.19■□□□□ 0.66
DDX41-217ENST00000515562 FAM171A1Q5VUB5 890 aa19.19■□□□□ 0.66
DDX41-217ENST00000515562 PALB2Q86YC2 1186 aa19.19■□□□□ 0.66
DDX41-217ENST00000515562 SYT2Q8N9I0 419 aaPredicted RBP19.19■□□□□ 0.66
DDX41-217ENST00000515562 FEZF2Q8TBJ5 459 aa19.19■□□□□ 0.66
DDX41-217ENST00000515562 SPIRE2Q8WWL2 714 aa19.19■□□□□ 0.66
DDX41-217ENST00000515562 PIK3R5Q8WYR1 880 aa19.19■□□□□ 0.66
DDX41-217ENST00000515562 STAMQ92783 540 aa19.19■□□□□ 0.66
DDX41-217ENST00000515562 PNMA5Q96PV4 448 aa19.19■□□□□ 0.66
DDX41-217ENST00000515562 PPP1R10Q96QC0 940 aaKnown RBP19.19■□□□□ 0.66
DDX41-217ENST00000515562 PRRX2Q99811 253 aa19.19■□□□□ 0.66
DDX41-217ENST00000515562 NTPCRQ9BSD7 190 aaKnown RBP19.19■□□□□ 0.66
DDX41-217ENST00000515562 CDT1Q9H211 546 aa19.19■□□□□ 0.66
DDX41-217ENST00000515562 CXCL16Q9H2A7 254 aa19.19■□□□□ 0.66
DDX41-217ENST00000515562 PTPRHQ9HD43 1115 aa19.19■□□□□ 0.66
DDX41-217ENST00000515562 ZDHHC7Q9NXF8 308 aa19.19■□□□□ 0.66
DDX41-217ENST00000515562 KMT2EQ8IZD2 1858 aa19.19■□□□□ 0.66
DDX41-217ENST00000515562 MTCL1Q9Y4B5 1905 aaKnown RBP19.18■□□□□ 0.66
DDX41-217ENST00000515562 BRD1O95696 1058 aa19.18■□□□□ 0.66
DDX41-217ENST00000515562 MCF2P10911 925 aa19.18■□□□□ 0.66
DDX41-217ENST00000515562 PLS3P13797 630 aa19.18■□□□□ 0.66
DDX41-217ENST00000515562 HOXD11P31277 338 aaPredicted RBP19.18■□□□□ 0.66
DDX41-217ENST00000515562 SMTNP53814 917 aa19.18■□□□□ 0.66
DDX41-217ENST00000515562 STRN3Q13033 797 aa19.18■□□□□ 0.66
DDX41-217ENST00000515562 PSMD5Q16401 504 aa19.18■□□□□ 0.66
DDX41-217ENST00000515562 TMEM119Q4V9L6 283 aa19.18■□□□□ 0.66
DDX41-217ENST00000515562 GLRA4Q5JXX5 417 aa19.18■□□□□ 0.66
DDX41-217ENST00000515562 PDZRN4Q6ZMN7 1036 aaPredicted RBP19.18■□□□□ 0.66
DDX41-217ENST00000515562 TAS1R3Q7RTX0 852 aa19.18■□□□□ 0.66
DDX41-217ENST00000515562 GLYCTKQ8IVS8 523 aa19.18■□□□□ 0.66
DDX41-217ENST00000515562 SMG7Q92540 1137 aaKnown RBP19.18■□□□□ 0.66
DDX41-217ENST00000515562 TARS2Q9BW92 718 aaKnown RBP19.18■□□□□ 0.66
DDX41-217ENST00000515562 WDR6Q9NNW5 1121 aaKnown RBP19.18■□□□□ 0.66
DDX41-217ENST00000515562 SLC38A7Q9NVC3 462 aa19.18■□□□□ 0.66
DDX41-217ENST00000515562 LIMD1Q9UGP4 676 aa19.18■□□□□ 0.66
DDX41-217ENST00000515562 CLUHO75153 1309 aa19.18■□□□□ 0.66
DDX41-217ENST00000515562 MYH11P35749 1972 aa19.17■□□□□ 0.66
DDX41-217ENST00000515562 SLC16A4O15374 487 aa19.17■□□□□ 0.66
DDX41-217ENST00000515562 RFPL2O75678 378 aa19.17■□□□□ 0.66
DDX41-217ENST00000515562 B3GAT3O94766 335 aa19.17■□□□□ 0.66
DDX41-217ENST00000515562 ASGR2P07307 311 aa19.17■□□□□ 0.66
DDX41-217ENST00000515562 PLA2G4BP0C869 781 aa19.17■□□□□ 0.66
DDX41-217ENST00000515562 RPL17P18621 184 aaKnown RBP19.17■□□□□ 0.66
DDX41-217ENST00000515562 PROZP22891 400 aa19.17■□□□□ 0.66
DDX41-217ENST00000515562 SLC12A3P55017 1021 aa19.17■□□□□ 0.66
DDX41-217ENST00000515562 RAD51AP2Q09MP3 1159 aa19.17■□□□□ 0.66
DDX41-217ENST00000515562 LILRA6Q6PI73 481 aa19.17■□□□□ 0.66
DDX41-217ENST00000515562 PRSS55Q6UWB4 352 aaPredicted RBP19.17■□□□□ 0.66
DDX41-217ENST00000515562 MPZL3Q6UWV2 235 aa19.17■□□□□ 0.66
DDX41-217ENST00000515562 CEP57Q86XR8 500 aa19.17■□□□□ 0.66
DDX41-217ENST00000515562 CEP120Q8N960 986 aa19.17■□□□□ 0.66
DDX41-217ENST00000515562 TCHPQ9BT92 498 aa19.17■□□□□ 0.66
DDX41-217ENST00000515562 SMIM28A0A1B0GU29 152 aa19.16■□□□□ 0.66
DDX41-217ENST00000515562 H0YCG3 227 aa19.16■□□□□ 0.66
DDX41-217ENST00000515562 TRAPPC3O43617 180 aa19.16■□□□□ 0.66
DDX41-217ENST00000515562 SPATA31D3P0C874 917 aa19.16■□□□□ 0.66
DDX41-217ENST00000515562 PDCP20941 246 aa19.16■□□□□ 0.66
DDX41-217ENST00000515562 XKR4Q5GH76 650 aa19.16■□□□□ 0.66
DDX41-217ENST00000515562 SPATA31D4Q6ZUB0 917 aa19.16■□□□□ 0.66
DDX41-217ENST00000515562 TMEM161BQ8NDZ6 487 aa19.16■□□□□ 0.66
DDX41-217ENST00000515562 LNX1Q8TBB1 728 aaPredicted RBP19.16■□□□□ 0.66
DDX41-217ENST00000515562 ZNF707Q96C28 371 aaPredicted RBP19.16■□□□□ 0.66
DDX41-217ENST00000515562 CALML4Q96GE6 196 aa19.16■□□□□ 0.66
DDX41-217ENST00000515562 SNX27Q96L92 541 aa19.16■□□□□ 0.66
DDX41-217ENST00000515562 PLIN2Q99541 437 aa19.16■□□□□ 0.66
DDX41-217ENST00000515562 PIDD1Q9HB75 910 aa19.16■□□□□ 0.66
DDX41-217ENST00000515562 LARSQ9P2J5 1176 aaKnown RBP19.16■□□□□ 0.66
DDX41-217ENST00000515562 FBXW11Q9UKB1 542 aa19.16■□□□□ 0.66
DDX41-217ENST00000515562 VWA8A3KMH1 1905 aa19.15■□□□□ 0.66
DDX41-217ENST00000515562 SFI1A8K8P3 1242 aa19.15■□□□□ 0.66
DDX41-217ENST00000515562 ABLIM1O14639 778 aa19.15■□□□□ 0.66
DDX41-217ENST00000515562 TOM1L1O75674 476 aa19.15■□□□□ 0.66
DDX41-217ENST00000515562 MYBP10242 640 aa19.15■□□□□ 0.66
DDX41-217ENST00000515562 UBA7P41226 1012 aa19.15■□□□□ 0.66
DDX41-217ENST00000515562 CLCNKBP51801 687 aa19.15■□□□□ 0.66
DDX41-217ENST00000515562 OSTNP61366 133 aa19.15■□□□□ 0.66
DDX41-217ENST00000515562 NHLH1Q02575 133 aa19.15■□□□□ 0.66
DDX41-217ENST00000515562 CUL4AQ13619 759 aa19.15■□□□□ 0.66
DDX41-217ENST00000515562 NOLC1Q14978 699 aaKnown RBP eCLIP19.15■□□□□ 0.66
DDX41-217ENST00000515562 UPP1Q16831 310 aa19.15■□□□□ 0.66
DDX41-217ENST00000515562 LIN9Q5TKA1 542 aa19.15■□□□□ 0.66
DDX41-217ENST00000515562 DCLRE1AQ6PJP8 1040 aa19.15■□□□□ 0.66
DDX41-217ENST00000515562 ALKAL1Q6UXT8 129 aa19.15■□□□□ 0.66
DDX41-217ENST00000515562 ZPBP2Q6X784 338 aa19.15■□□□□ 0.66
DDX41-217ENST00000515562 DDX27Q96GQ7 796 aaKnown RBP19.15■□□□□ 0.66
DDX41-217ENST00000515562 ACAP3Q96P50 834 aa19.15■□□□□ 0.66
DDX41-217ENST00000515562 CLSTN3Q9BQT9 956 aa19.15■□□□□ 0.66
DDX41-217ENST00000515562 PRKD2Q9BZL6 878 aa19.15■□□□□ 0.66
DDX41-217ENST00000515562 ANKFY1Q9P2R3 1169 aa19.15■□□□□ 0.66
DDX41-217ENST00000515562 ODF2LQ9ULJ1 636 aa19.15■□□□□ 0.66
DDX41-217ENST00000515562 TRIP11Q15643 1979 aa19.15■□□□□ 0.66
DDX41-217ENST00000515562 CITO14578 2027 aa19.14■□□□□ 0.65
DDX41-217ENST00000515562 MYO10Q9HD67 2058 aa19.14■□□□□ 0.65
DDX41-217ENST00000515562 ZMYND10O75800 440 aa19.14■□□□□ 0.65
DDX41-217ENST00000515562 MAPTP10636 758 aaKnown RBP19.14■□□□□ 0.65
DDX41-217ENST00000515562 KCNE1P15382 129 aa19.14■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms