RNA–Protein interactions for RNA: ENST00000515397.1

VCAN-212, Transcript of versican, humanhuman

TSL 2

Gene VCAN, Length 536 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-212ENST00000515397 SOX4Q06945 474 aaPredicted RBP12.59□□□□□ -0.39
VCAN-212ENST00000515397 TUSC3Q13454 348 aa12.59□□□□□ -0.39
VCAN-212ENST00000515397 HSP90AA2PQ14568 343 aaPredicted RBP12.59□□□□□ -0.39
VCAN-212ENST00000515397 ZBTB41Q5SVQ8 909 aa12.59□□□□□ -0.39
VCAN-212ENST00000515397 KIAA0319Q5VV43 1072 aa12.59□□□□□ -0.39
VCAN-212ENST00000515397 KIAA1841Q6NSI8 718 aa12.59□□□□□ -0.39
VCAN-212ENST00000515397 PRSS55Q6UWB4 352 aaPredicted RBP12.59□□□□□ -0.39
VCAN-212ENST00000515397 MPZL3Q6UWV2 235 aa12.59□□□□□ -0.39
VCAN-212ENST00000515397 PALB2Q86YC2 1186 aa12.59□□□□□ -0.39
VCAN-212ENST00000515397 KCTD17Q8N5Z5 321 aa12.59□□□□□ -0.39
VCAN-212ENST00000515397 SLC22A17Q8WUG5 538 aa12.59□□□□□ -0.39
VCAN-212ENST00000515397 DDX12PQ92771 950 aa12.59□□□□□ -0.39
VCAN-212ENST00000515397 C18orf25Q96B23 403 aaPredicted RBP12.59□□□□□ -0.39
VCAN-212ENST00000515397 RPGRIP1Q96KN7 1286 aa12.59□□□□□ -0.39
VCAN-212ENST00000515397 PPP1R10Q96QC0 940 aaKnown RBP12.59□□□□□ -0.39
VCAN-212ENST00000515397 HERC2P3Q9BVR0 1158 aa12.59□□□□□ -0.39
VCAN-212ENST00000515397 CCDC94Q9BW85 323 aaPredicted RBP12.59□□□□□ -0.39
VCAN-212ENST00000515397 MRPL17Q9NRX2 175 aaKnown RBP12.59□□□□□ -0.39
VCAN-212ENST00000515397 KCND2Q9NZV8 630 aa12.59□□□□□ -0.39
VCAN-212ENST00000515397 LARSQ9P2J5 1176 aaKnown RBP12.59□□□□□ -0.39
VCAN-212ENST00000515397 ADAM28Q9UKQ2 775 aa12.59□□□□□ -0.39
VCAN-212ENST00000515397 ODF2LQ9ULJ1 636 aa12.59□□□□□ -0.39
VCAN-212ENST00000515397 TBX20Q9UMR3 447 aa12.59□□□□□ -0.39
VCAN-212ENST00000515397 FAM86C2PA6NEL3 165 aa12.58□□□□□ -0.4
VCAN-212ENST00000515397 ANKRD63C9JTQ0 380 aa12.58□□□□□ -0.4
VCAN-212ENST00000515397 TEX28O15482 410 aa12.58□□□□□ -0.4
VCAN-212ENST00000515397 CLDN3O15551 220 aa12.58□□□□□ -0.4
VCAN-212ENST00000515397 TBCAO75347 108 aaKnown RBP12.58□□□□□ -0.4
VCAN-212ENST00000515397 EFEMP2O95967 443 aa12.58□□□□□ -0.4
VCAN-212ENST00000515397 URODP06132 367 aa12.58□□□□□ -0.4
VCAN-212ENST00000515397 MCF2P10911 925 aa12.58□□□□□ -0.4
VCAN-212ENST00000515397 TXLNAP40222 546 aa12.58□□□□□ -0.4
VCAN-212ENST00000515397 TNFSF9P41273 254 aa12.58□□□□□ -0.4
VCAN-212ENST00000515397 STAT6P42226 847 aa12.58□□□□□ -0.4
VCAN-212ENST00000515397 CLCNKBP51801 687 aa12.58□□□□□ -0.4
VCAN-212ENST00000515397 ZNF131P52739 623 aa12.58□□□□□ -0.4
VCAN-212ENST00000515397 YARSP54577 528 aaKnown RBP12.58□□□□□ -0.4
VCAN-212ENST00000515397 DNM1Q05193 864 aaKnown RBP12.58□□□□□ -0.4
VCAN-212ENST00000515397 FAM171A1Q5VUB5 890 aa12.58□□□□□ -0.4
VCAN-212ENST00000515397 ALKAL1Q6UXT8 129 aa12.58□□□□□ -0.4
VCAN-212ENST00000515397 TMC5Q6UXY8 1006 aa12.58□□□□□ -0.4
VCAN-212ENST00000515397 TMEM184AQ6ZMB5 413 aa12.58□□□□□ -0.4
VCAN-212ENST00000515397 SV2BQ7L1I2 683 aa12.58□□□□□ -0.4
VCAN-212ENST00000515397 SFR1Q86XK3 245 aa12.58□□□□□ -0.4
VCAN-212ENST00000515397 ADHFE1Q8IWW8 467 aa12.58□□□□□ -0.4
VCAN-212ENST00000515397 RIN2Q8WYP3 895 aaPredicted RBP12.58□□□□□ -0.4
VCAN-212ENST00000515397 ACAP3Q96P50 834 aa12.58□□□□□ -0.4
VCAN-212ENST00000515397 FIZ1Q96SL8 496 aa12.58□□□□□ -0.4
VCAN-212ENST00000515397 FAM50BQ9Y247 325 aa12.58□□□□□ -0.4
VCAN-212ENST00000515397 ZDHHC9Q9Y397 364 aa12.58□□□□□ -0.4
VCAN-212ENST00000515397 SPDYE4A6NLX3 237 aa12.57□□□□□ -0.4
VCAN-212ENST00000515397 TOM1L1O75674 476 aa12.57□□□□□ -0.4
VCAN-212ENST00000515397 B3GAT3O94766 335 aa12.57□□□□□ -0.4
VCAN-212ENST00000515397 IDEP14735 1019 aa12.57□□□□□ -0.4
VCAN-212ENST00000515397 BRCC3P46736 316 aa12.57□□□□□ -0.4
VCAN-212ENST00000515397 GLUD2P49448 558 aa12.57□□□□□ -0.4
VCAN-212ENST00000515397 LIG4P49917 911 aa12.57□□□□□ -0.4
VCAN-212ENST00000515397 CLCN4P51793 760 aa12.57□□□□□ -0.4
VCAN-212ENST00000515397 KCNA1Q09470 495 aa12.57□□□□□ -0.4
VCAN-212ENST00000515397 NOLC1Q14978 699 aaKnown RBP eCLIP12.57□□□□□ -0.4
VCAN-212ENST00000515397 SLC10A6Q3KNW5 377 aa12.57□□□□□ -0.4
VCAN-212ENST00000515397 USP41Q3LFD5 358 aa12.57□□□□□ -0.4
VCAN-212ENST00000515397 RTP2Q5QGT7 225 aa12.57□□□□□ -0.4
VCAN-212ENST00000515397 SLC39A4Q6P5W5 647 aa12.57□□□□□ -0.4
VCAN-212ENST00000515397 SHC4Q6S5L8 630 aa12.57□□□□□ -0.4
VCAN-212ENST00000515397 CD300LGQ6UXG3 332 aa12.57□□□□□ -0.4
VCAN-212ENST00000515397 APBB1IPQ7Z5R6 666 aaPredicted RBP12.57□□□□□ -0.4
VCAN-212ENST00000515397 RNF168Q8IYW5 571 aaPredicted RBP12.57□□□□□ -0.4
VCAN-212ENST00000515397 CASP10Q92851 521 aa12.57□□□□□ -0.4
VCAN-212ENST00000515397 HPS3Q969F9 1004 aa12.57□□□□□ -0.4
VCAN-212ENST00000515397 DNAJC19Q96DA6 116 aa12.57□□□□□ -0.4
VCAN-212ENST00000515397 FAM212AQ96EL1 285 aa12.57□□□□□ -0.4
VCAN-212ENST00000515397 SNX27Q96L92 541 aa12.57□□□□□ -0.4
VCAN-212ENST00000515397 EMILIN2Q9BXX0 1053 aa12.57□□□□□ -0.4
VCAN-212ENST00000515397 FGFBP2Q9BYJ0 223 aa12.57□□□□□ -0.4
VCAN-212ENST00000515397 CHST7Q9NS84 486 aa12.57□□□□□ -0.4
VCAN-212ENST00000515397 PCDHA7Q9UN72 937 aa12.57□□□□□ -0.4
VCAN-212ENST00000515397 IRAK3Q9Y616 596 aa12.57□□□□□ -0.4
VCAN-212ENST00000515397 CARNS1A5YM72 827 aa12.56□□□□□ -0.4
VCAN-212ENST00000515397 C19orf67A6NJJ6 358 aa12.56□□□□□ -0.4
VCAN-212ENST00000515397 ADAM12O43184 909 aa12.56□□□□□ -0.4
VCAN-212ENST00000515397 SRGAP2BP0DMP2 458 aa12.56□□□□□ -0.4
VCAN-212ENST00000515397 CXCL8P10145 99 aa12.56□□□□□ -0.4
VCAN-212ENST00000515397 CASP1P29466 404 aa12.56□□□□□ -0.4
VCAN-212ENST00000515397 GUCY2FP51841 1108 aa12.56□□□□□ -0.4
VCAN-212ENST00000515397 DSG1Q02413 1049 aa12.56□□□□□ -0.4
VCAN-212ENST00000515397 MCL1Q07820 350 aa12.56□□□□□ -0.4
VCAN-212ENST00000515397 HERC4Q5GLZ8 1057 aaPredicted RBP12.56□□□□□ -0.4
VCAN-212ENST00000515397 AXDND1Q5T1B0 1012 aaPredicted RBP12.56□□□□□ -0.4
VCAN-212ENST00000515397 ZPBP2Q6X784 338 aa12.56□□□□□ -0.4
VCAN-212ENST00000515397 CCDC73Q6ZRK6 1079 aa12.56□□□□□ -0.4
VCAN-212ENST00000515397 C3orf58Q8NDZ4 430 aa12.56□□□□□ -0.4
VCAN-212ENST00000515397 SUSD6Q92537 303 aa12.56□□□□□ -0.4
VCAN-212ENST00000515397 DHX58Q96C10 678 aa12.56□□□□□ -0.4
VCAN-212ENST00000515397 FBXL18Q96ME1 805 aa12.56□□□□□ -0.4
VCAN-212ENST00000515397 TSHZ2Q9NRE2 1034 aa12.56□□□□□ -0.4
VCAN-212ENST00000515397 STK17AQ9UEE5 414 aa12.56□□□□□ -0.4
VCAN-212ENST00000515397 RAPGEFL1Q9UHV5 662 aa12.56□□□□□ -0.4
VCAN-212ENST00000515397 KCNG1Q9UIX4 513 aa12.56□□□□□ -0.4
VCAN-212ENST00000515397 TDRD15B5MCY1 1934 aaKnown RBP12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms