RNA–Protein interactions for RNA: ENST00000513346.5

TCOF1-211, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-211ENST00000513346 KCNMA1Q12791 1236 aa11.91□□□□□ -0.5
TCOF1-211ENST00000513346 PPP2R5CQ13362 524 aa11.91□□□□□ -0.5
TCOF1-211ENST00000513346 MEA1Q16626 185 aa11.91□□□□□ -0.5
TCOF1-211ENST00000513346 WASHC2DQ5SRD0 308 aa11.91□□□□□ -0.5
TCOF1-211ENST00000513346 SCYL2Q6P3W7 929 aa11.91□□□□□ -0.5
TCOF1-211ENST00000513346 CATSPER1Q8NEC5 780 aa11.91□□□□□ -0.5
TCOF1-211ENST00000513346 MTMR8Q96EF0 704 aa11.91□□□□□ -0.5
TCOF1-211ENST00000513346 C9orf72Q96LT7 481 aa11.91□□□□□ -0.5
TCOF1-211ENST00000513346 MAGEB18Q96M61 343 aa11.91□□□□□ -0.5
TCOF1-211ENST00000513346 RPS6KC1Q96S38 1066 aa11.91□□□□□ -0.5
TCOF1-211ENST00000513346 TSSK1BQ9BXA7 367 aa11.91□□□□□ -0.5
TCOF1-211ENST00000513346 MTO1Q9Y2Z2 717 aaKnown RBP11.91□□□□□ -0.5
TCOF1-211ENST00000513346 B2RBV5 119 aa11.91□□□□□ -0.5
TCOF1-211ENST00000513346 OPLAHO14841 1288 aa11.91□□□□□ -0.5
TCOF1-211ENST00000513346 MYBL1P10243 752 aa11.91□□□□□ -0.5
TCOF1-211ENST00000513346 KITP10721 976 aa11.91□□□□□ -0.5
TCOF1-211ENST00000513346 PIK3CAP42336 1068 aa11.91□□□□□ -0.5
TCOF1-211ENST00000513346 TGFB2P61812 414 aa11.91□□□□□ -0.5
TCOF1-211ENST00000513346 ERVK-9P63128 1117 aa11.91□□□□□ -0.5
TCOF1-211ENST00000513346 DYNLT1P63172 113 aa11.91□□□□□ -0.5
TCOF1-211ENST00000513346 MAPK7Q13164 816 aa11.91□□□□□ -0.5
TCOF1-211ENST00000513346 THOC5Q13769 683 aaKnown RBP11.91□□□□□ -0.5
TCOF1-211ENST00000513346 C12orf60Q5U649 245 aa11.91□□□□□ -0.5
TCOF1-211ENST00000513346 CYFIP1Q7L576 1253 aa11.91□□□□□ -0.5
TCOF1-211ENST00000513346 RSPH3Q86UC2 560 aa11.91□□□□□ -0.5
TCOF1-211ENST00000513346 ZBED8Q8IZ13 594 aa11.91□□□□□ -0.5
TCOF1-211ENST00000513346 RIBC1Q8N443 379 aaPredicted RBP11.91□□□□□ -0.5
TCOF1-211ENST00000513346 GABPB2Q8TAK5 448 aaPredicted RBP11.91□□□□□ -0.5
TCOF1-211ENST00000513346 BHMT2Q9H2M3 363 aa11.91□□□□□ -0.5
TCOF1-211ENST00000513346 ABCB11O95342 1321 aa11.91□□□□□ -0.5
TCOF1-211ENST00000513346 USP17L15C9J2P7 530 aa11.91□□□□□ -0.5
TCOF1-211ENST00000513346 USP17L13C9JLJ4 530 aa11.91□□□□□ -0.5
TCOF1-211ENST00000513346 USP17L11C9JVI0 530 aa11.91□□□□□ -0.5
TCOF1-211ENST00000513346 USP17L18D6R9N7 530 aa11.91□□□□□ -0.5
TCOF1-211ENST00000513346 USP17L22D6RA61 530 aa11.91□□□□□ -0.5
TCOF1-211ENST00000513346 USP17L17D6RBQ6 530 aa11.91□□□□□ -0.5
TCOF1-211ENST00000513346 USP17L19D6RCP7 530 aa11.91□□□□□ -0.5
TCOF1-211ENST00000513346 USP17L20D6RJB6 530 aa11.91□□□□□ -0.5
TCOF1-211ENST00000513346 RARGP13631 454 aa11.91□□□□□ -0.5
TCOF1-211ENST00000513346 SLC12A2P55011 1212 aa11.91□□□□□ -0.5
TCOF1-211ENST00000513346 USP17L24Q0WX57 530 aa11.91□□□□□ -0.5
TCOF1-211ENST00000513346 PDIA2Q13087 525 aaKnown RBP11.91□□□□□ -0.5
TCOF1-211ENST00000513346 GRM4Q14833 912 aa11.91□□□□□ -0.5
TCOF1-211ENST00000513346 Q3C1V9 767 aa11.91□□□□□ -0.5
TCOF1-211ENST00000513346 HP1BP3Q5SSJ5 553 aaPredicted RBP11.91□□□□□ -0.5
TCOF1-211ENST00000513346 THEMIS2Q5TEJ8 643 aa11.91□□□□□ -0.5
TCOF1-211ENST00000513346 IRGCQ6NXR0 463 aa11.91□□□□□ -0.5
TCOF1-211ENST00000513346 USP17L6PQ6QN14 398 aa11.91□□□□□ -0.5
TCOF1-211ENST00000513346 ATP11CQ8NB49 1132 aa11.91□□□□□ -0.5
TCOF1-211ENST00000513346 SNRNP27Q8WVK2 155 aaKnown RBP11.91□□□□□ -0.5
TCOF1-211ENST00000513346 CENPTQ96BT3 561 aa11.91□□□□□ -0.5
TCOF1-211ENST00000513346 RBM41Q96IZ5 413 aaKnown RBP11.91□□□□□ -0.5
TCOF1-211ENST00000513346 XPOTO43592 962 aaKnown RBP11.91□□□□□ -0.5
TCOF1-211ENST00000513346 ATP9AO75110 1047 aa11.91□□□□□ -0.5
TCOF1-211ENST00000513346 BMP6P22004 513 aa11.91□□□□□ -0.5
TCOF1-211ENST00000513346 CNGA3Q16281 694 aa11.91□□□□□ -0.5
TCOF1-211ENST00000513346 C4orf33Q8N1A6 199 aa11.91□□□□□ -0.5
TCOF1-211ENST00000513346 SCYL1Q96KG9 808 aa11.91□□□□□ -0.5
TCOF1-211ENST00000513346 THTPAQ9BU02 230 aa11.91□□□□□ -0.5
TCOF1-211ENST00000513346 PCDHA6Q9UN73 950 aa11.91□□□□□ -0.5
TCOF1-211ENST00000513346 CHMP2BQ9UQN3 213 aa11.91□□□□□ -0.5
TCOF1-211ENST00000513346 PCDHA8Q9Y5H6 950 aa11.91□□□□□ -0.5
TCOF1-211ENST00000513346 PLSCR1O15162 318 aa11.9□□□□□ -0.5
TCOF1-211ENST00000513346 KRT38O76015 456 aa11.9□□□□□ -0.5
TCOF1-211ENST00000513346 PSAPP07602 524 aa11.9□□□□□ -0.5
TCOF1-211ENST00000513346 TMEM253P0C7T8 217 aa11.9□□□□□ -0.5
TCOF1-211ENST00000513346 CALB2P22676 271 aa11.9□□□□□ -0.5
TCOF1-211ENST00000513346 EEF1B2P24534 225 aaKnown RBP11.9□□□□□ -0.5
TCOF1-211ENST00000513346 DSG1Q02413 1049 aa11.9□□□□□ -0.5
TCOF1-211ENST00000513346 SPP2Q13103 211 aa11.9□□□□□ -0.5
TCOF1-211ENST00000513346 RINT1Q6NUQ1 792 aa11.9□□□□□ -0.5
TCOF1-211ENST00000513346 RICTORQ6R327 1708 aa11.9□□□□□ -0.5
TCOF1-211ENST00000513346 EXOC8Q8IYI6 725 aa11.9□□□□□ -0.5
TCOF1-211ENST00000513346 CCDC124Q96CT7 223 aaKnown RBP11.9□□□□□ -0.5
TCOF1-211ENST00000513346 MRPL46Q9H2W6 279 aaKnown RBP11.9□□□□□ -0.5
TCOF1-211ENST00000513346 CYP4F11Q9HBI6 524 aa11.9□□□□□ -0.5
TCOF1-211ENST00000513346 HACL1Q9UJ83 578 aa11.9□□□□□ -0.5
TCOF1-211ENST00000513346 PHTF1Q9UMS5 762 aa11.9□□□□□ -0.5
TCOF1-211ENST00000513346 PCDHB4Q9Y5E5 795 aa11.9□□□□□ -0.5
TCOF1-211ENST00000513346 KDM6AO15550 1401 aaPredicted RBP11.9□□□□□ -0.5
TCOF1-211ENST00000513346 F5H6K3 240 aa11.9□□□□□ -0.5
TCOF1-211ENST00000513346 GIPC1O14908 333 aa11.9□□□□□ -0.5
TCOF1-211ENST00000513346 RFX1P22670 979 aa11.9□□□□□ -0.5
TCOF1-211ENST00000513346 KLRC3Q07444 240 aa11.9□□□□□ -0.5
TCOF1-211ENST00000513346 ZNF746Q6NUN9 644 aaPredicted RBP11.9□□□□□ -0.5
TCOF1-211ENST00000513346 TMC3Q7Z5M5 1100 aa11.9□□□□□ -0.5
TCOF1-211ENST00000513346 NEDD1Q8NHV4 660 aa11.9□□□□□ -0.5
TCOF1-211ENST00000513346 TBC1D16Q8TBP0 767 aa11.9□□□□□ -0.5
TCOF1-211ENST00000513346 STK32AQ8WU08 396 aa11.9□□□□□ -0.5
TCOF1-211ENST00000513346 ATXN2LQ8WWM7 1075 aaKnown RBP11.9□□□□□ -0.5
TCOF1-211ENST00000513346 CCDC138Q96M89 665 aa11.9□□□□□ -0.5
TCOF1-211ENST00000513346 RBM15Q96T37 977 aaKnown RBP eCLIP11.9□□□□□ -0.5
TCOF1-211ENST00000513346 HOXC10Q9NYD6 342 aa11.9□□□□□ -0.5
TCOF1-211ENST00000513346 SCAF8Q9UPN6 1271 aaKnown RBP11.9□□□□□ -0.5
TCOF1-211ENST00000513346 C2CD2Q9Y426 696 aa11.9□□□□□ -0.5
TCOF1-211ENST00000513346 USP17L10C9JJH3 530 aa11.9□□□□□ -0.5
TCOF1-211ENST00000513346 TLR3O15455 904 aaKnown RBP11.9□□□□□ -0.5
TCOF1-211ENST00000513346 TMCC1O94876 653 aa11.9□□□□□ -0.5
TCOF1-211ENST00000513346 NOP14P78316 857 aaKnown RBP11.9□□□□□ -0.5
TCOF1-211ENST00000513346 GPS1Q13098 491 aa11.9□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms