RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 SV2AQ7L0J3 742 aa12.86□□□□□ -0.35
NUP54-202ENST00000502850 PALB2Q86YC2 1186 aa12.86□□□□□ -0.35
NUP54-202ENST00000502850 ANKRD35Q8N283 1001 aa12.86□□□□□ -0.35
NUP54-202ENST00000502850 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.86□□□□□ -0.35
NUP54-202ENST00000502850 DEPTORQ8TB45 409 aa12.86□□□□□ -0.35
NUP54-202ENST00000502850 TAS1R2Q8TE23 839 aa12.86□□□□□ -0.35
NUP54-202ENST00000502850 MAIP1Q8WWC4 291 aa12.86□□□□□ -0.35
NUP54-202ENST00000502850 SEMA4DQ92854 862 aa12.86□□□□□ -0.35
NUP54-202ENST00000502850 ZNF653Q96CK0 615 aa12.86□□□□□ -0.35
NUP54-202ENST00000502850 HINFPQ9BQA5 517 aa12.86□□□□□ -0.35
NUP54-202ENST00000502850 FAM107BQ9H098 131 aa12.86□□□□□ -0.35
NUP54-202ENST00000502850 PORCNQ9H237 461 aa12.86□□□□□ -0.35
NUP54-202ENST00000502850 AVENQ9NQS1 362 aaPredicted RBP12.86□□□□□ -0.35
NUP54-202ENST00000502850 AMACRQ9UHK6 382 aa12.86□□□□□ -0.35
NUP54-202ENST00000502850 FAM153AQ9UHL3 310 aa12.86□□□□□ -0.35
NUP54-202ENST00000502850 PCNTO95613 3336 aa12.86□□□□□ -0.35
NUP54-202ENST00000502850 ZNFX1Q9P2E3 1918 aaKnown RBP12.86□□□□□ -0.35
NUP54-202ENST00000502850 PODXLO00592 558 aa12.85□□□□□ -0.35
NUP54-202ENST00000502850 DLATP10515 647 aaKnown RBP12.85□□□□□ -0.35
NUP54-202ENST00000502850 ECHS1P30084 290 aa12.85□□□□□ -0.35
NUP54-202ENST00000502850 CTNNA1P35221 906 aaKnown RBP12.85□□□□□ -0.35
NUP54-202ENST00000502850 AP3M2P53677 418 aa12.85□□□□□ -0.35
NUP54-202ENST00000502850 EIF3BP55884 814 aaKnown RBP12.85□□□□□ -0.35
NUP54-202ENST00000502850 POU5F1Q01860 360 aaKnown RBP12.85□□□□□ -0.35
NUP54-202ENST00000502850 BIRC3Q13489 604 aa12.85□□□□□ -0.35
NUP54-202ENST00000502850 NEDD9Q14511 834 aa12.85□□□□□ -0.35
NUP54-202ENST00000502850 EMC10Q5UCC4 262 aa12.85□□□□□ -0.35
NUP54-202ENST00000502850 DCAF12L1Q5VU92 463 aa12.85□□□□□ -0.35
NUP54-202ENST00000502850 ACAD10Q6JQN1 1059 aa12.85□□□□□ -0.35
NUP54-202ENST00000502850 KDM7AQ6ZMT4 941 aa12.85□□□□□ -0.35
NUP54-202ENST00000502850 C15orf39Q6ZRI6 1047 aa12.85□□□□□ -0.35
NUP54-202ENST00000502850 CROCCP2Q86T23 111 aa12.85□□□□□ -0.35
NUP54-202ENST00000502850 SLC47A2Q86VL8 602 aa12.85□□□□□ -0.35
NUP54-202ENST00000502850 RIOX2Q8IUF8 465 aa12.85□□□□□ -0.35
NUP54-202ENST00000502850 FAM167AQ96KS9 214 aa12.85□□□□□ -0.35
NUP54-202ENST00000502850 FAM213AQ9BRX8 229 aa12.85□□□□□ -0.35
NUP54-202ENST00000502850 NUP85Q9BW27 656 aa12.85□□□□□ -0.35
NUP54-202ENST00000502850 NIFKQ9BYG3 293 aaKnown RBP12.85□□□□□ -0.35
NUP54-202ENST00000502850 DHX33Q9H6R0 707 aaKnown RBP12.85□□□□□ -0.35
NUP54-202ENST00000502850 TMEM134Q9H6X4 195 aa12.85□□□□□ -0.35
NUP54-202ENST00000502850 NRBP2Q9NSY0 501 aa12.85□□□□□ -0.35
NUP54-202ENST00000502850 TLL2Q9Y6L7 1015 aa12.85□□□□□ -0.35
NUP54-202ENST00000502850 LRRC37A2A6NM11 1700 aa12.85□□□□□ -0.35
NUP54-202ENST00000502850 ADGRA3Q8IWK6 1321 aa12.85□□□□□ -0.35
NUP54-202ENST00000502850 SRRM3A6NNA2 597 aaPredicted RBP12.84□□□□□ -0.35
NUP54-202ENST00000502850 TTI1O43156 1089 aa12.84□□□□□ -0.35
NUP54-202ENST00000502850 SPOPO43791 374 aa12.84□□□□□ -0.35
NUP54-202ENST00000502850 GAS2O43903 313 aaKnown RBP12.84□□□□□ -0.35
NUP54-202ENST00000502850 MMEP08473 750 aa12.84□□□□□ -0.35
NUP54-202ENST00000502850 MYZAPP0CAP1 466 aa12.84□□□□□ -0.35
NUP54-202ENST00000502850 TGFB3P10600 412 aa12.84□□□□□ -0.35
NUP54-202ENST00000502850 ITGA4P13612 1032 aa12.84□□□□□ -0.35
NUP54-202ENST00000502850 TBXAS1P24557 533 aaPredicted RBP12.84□□□□□ -0.35
NUP54-202ENST00000502850 ALDH5A1P51649 535 aaPredicted RBP12.84□□□□□ -0.35
NUP54-202ENST00000502850 MESDQ14696 234 aa12.84□□□□□ -0.35
NUP54-202ENST00000502850 PTPROQ16827 1216 aa12.84□□□□□ -0.35
NUP54-202ENST00000502850 CLEC16AQ2KHT3 1053 aa12.84□□□□□ -0.35
NUP54-202ENST00000502850 TTMPQ5BVD1 217 aa12.84□□□□□ -0.35
NUP54-202ENST00000502850 PAXIP1Q6ZW49 1069 aaPredicted RBP12.84□□□□□ -0.35
NUP54-202ENST00000502850 TRMT1LQ7Z2T5 733 aaKnown RBP12.84□□□□□ -0.35
NUP54-202ENST00000502850 ZSWIM2Q8NEG5 633 aa12.84□□□□□ -0.35
NUP54-202ENST00000502850 PSPC1Q8WXF1 523 aaKnown RBP12.84□□□□□ -0.35
NUP54-202ENST00000502850 KAT5Q92993 513 aa12.84□□□□□ -0.35
NUP54-202ENST00000502850 CAPNS2Q96L46 248 aa12.84□□□□□ -0.35
NUP54-202ENST00000502850 ATP6V1G3Q96LB4 118 aa12.84□□□□□ -0.35
NUP54-202ENST00000502850 PCDHB18PQ96TA0 734 aa12.84□□□□□ -0.35
NUP54-202ENST00000502850 FMO2Q99518 471 aa12.84□□□□□ -0.35
NUP54-202ENST00000502850 ERP44Q9BS26 406 aa12.84□□□□□ -0.35
NUP54-202ENST00000502850 TSPYL1Q9H0U9 437 aa12.84□□□□□ -0.35
NUP54-202ENST00000502850 WBP1LQ9NX94 342 aa12.84□□□□□ -0.35
NUP54-202ENST00000502850 LCMT1Q9UIC8 334 aa12.84□□□□□ -0.35
NUP54-202ENST00000502850 AGO2Q9UKV8 859 aaKnown RBP12.84□□□□□ -0.35
NUP54-202ENST00000502850 TRPC6Q9Y210 931 aa12.84□□□□□ -0.35
NUP54-202ENST00000502850 PLAAQ9Y263 795 aa12.84□□□□□ -0.35
NUP54-202ENST00000502850 PCDHB2Q9Y5E7 798 aa12.84□□□□□ -0.35
NUP54-202ENST00000502850 CSADQ9Y600 493 aa12.84□□□□□ -0.35
NUP54-202ENST00000502850 IGKV6D-21A0A0A0MT36 114 aa12.84□□□□□ -0.35
NUP54-202ENST00000502850 K7ERI5 159 aa12.84□□□□□ -0.35
NUP54-202ENST00000502850 EIF3HO15372 352 aaKnown RBP eCLIP12.84□□□□□ -0.35
NUP54-202ENST00000502850 DAPK3O43293 454 aa12.84□□□□□ -0.35
NUP54-202ENST00000502850 KRT5P13647 590 aa12.84□□□□□ -0.35
NUP54-202ENST00000502850 COMTP21964 271 aa12.84□□□□□ -0.35
NUP54-202ENST00000502850 MAN1A1P33908 653 aa12.84□□□□□ -0.35
NUP54-202ENST00000502850 ARL2P36404 184 aa12.84□□□□□ -0.35
NUP54-202ENST00000502850 HSD17B3P37058 310 aa12.84□□□□□ -0.35
NUP54-202ENST00000502850 PIK3CAP42336 1068 aa12.84□□□□□ -0.35
NUP54-202ENST00000502850 SLC1A1P43005 524 aa12.84□□□□□ -0.35
NUP54-202ENST00000502850 FNTAP49354 379 aa12.84□□□□□ -0.35
NUP54-202ENST00000502850 RWDD2BP57060 319 aa12.84□□□□□ -0.35
NUP54-202ENST00000502850 SP4Q02446 784 aa12.84□□□□□ -0.35
NUP54-202ENST00000502850 ZACNQ401N2 412 aa12.84□□□□□ -0.35
NUP54-202ENST00000502850 KCNV1Q6PIU1 500 aa12.84□□□□□ -0.35
NUP54-202ENST00000502850 LBX2Q6XYB7 198 aa12.84□□□□□ -0.35
NUP54-202ENST00000502850 TNS4Q8IZW8 715 aa12.84□□□□□ -0.35
NUP54-202ENST00000502850 DCPSQ96C86 337 aaKnown RBP12.84□□□□□ -0.35
NUP54-202ENST00000502850 ZNF408Q9H9D4 720 aa12.84□□□□□ -0.35
NUP54-202ENST00000502850 PCYOX1Q9UHG3 505 aa12.84□□□□□ -0.35
NUP54-202ENST00000502850 SBDSQ9Y3A5 250 aaKnown RBP eCLIP12.84□□□□□ -0.35
NUP54-202ENST00000502850 PCDHA3Q9Y5H8 950 aa12.84□□□□□ -0.35
NUP54-202ENST00000502850 OTOFQ9HC10 1997 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms