RNA–Protein interactions for RNA: ENST00000497597.5

TRAPPC12-223, Transcript of trafficking protein particle complex 12, human

TSL 2

Gene TRAPPC12, Length 3,401 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TRAPPC12-223	ENST00000497597	KRT5	P13647	590 aa		11.29	□□□□□ -0.6
TRAPPC12-223	ENST00000497597	AMPD1	P23109	780 aa		11.29	□□□□□ -0.6
TRAPPC12-223	ENST00000497597	NMT1	P30419	496 aa	Known RBP	11.29	□□□□□ -0.6
TRAPPC12-223	ENST00000497597	SLC35G1	Q2M3R5	365 aa		11.29	□□□□□ -0.6
TRAPPC12-223	ENST00000497597	RNF43	Q68DV7	783 aa		11.29	□□□□□ -0.6
TRAPPC12-223	ENST00000497597	TRMT10C	Q7L0Y3	403 aa	Known RBP	11.29	□□□□□ -0.6
TRAPPC12-223	ENST00000497597	TTC7B	Q86TV6	843 aa		11.29	□□□□□ -0.6
TRAPPC12-223	ENST00000497597	DGKH	Q86XP1	1220 aa		11.29	□□□□□ -0.6
TRAPPC12-223	ENST00000497597	SLC26A7	Q8TE54	656 aa		11.29	□□□□□ -0.6
TRAPPC12-223	ENST00000497597	RBM15	Q96T37	977 aa	Known RBP eCLIP	11.29	□□□□□ -0.6	2e-7	■■■■■ 39.2
TRAPPC12-223	ENST00000497597	MTA3	Q9BTC8	594 aa		11.29	□□□□□ -0.6
TRAPPC12-223	ENST00000497597	CADM1	Q9BY67	442 aa	Known RBP	11.29	□□□□□ -0.6
TRAPPC12-223	ENST00000497597	IQCG	Q9H095	443 aa	Known RBP	11.29	□□□□□ -0.6
TRAPPC12-223	ENST00000497597	PKD2L1	Q9P0L9	805 aa		11.29	□□□□□ -0.6
TRAPPC12-223	ENST00000497597	CNOT7	Q9UIV1	285 aa	Known RBP	11.29	□□□□□ -0.6
TRAPPC12-223	ENST00000497597	GTF3C5	Q9Y5Q8	519 aa	Predicted RBP	11.29	□□□□□ -0.6
TRAPPC12-223	ENST00000497597	PIK3C2A	O00443	1686 aa		11.29	□□□□□ -0.6
TRAPPC12-223	ENST00000497597	GALK1	P51570	392 aa		11.29	□□□□□ -0.6
TRAPPC12-223	ENST00000497597	SNAP25	P60880	206 aa		11.29	□□□□□ -0.6
TRAPPC12-223	ENST00000497597	NOP14	P78316	857 aa	Known RBP	11.29	□□□□□ -0.6
TRAPPC12-223	ENST00000497597	IGBP1	P78318	339 aa		11.29	□□□□□ -0.6
TRAPPC12-223	ENST00000497597	MKRN3	Q13064	507 aa	Known RBP	11.29	□□□□□ -0.6
TRAPPC12-223	ENST00000497597	WASHC2D	Q5SRD0	308 aa		11.29	□□□□□ -0.6
TRAPPC12-223	ENST00000497597	EFCAB3	Q8N7B9	438 aa		11.29	□□□□□ -0.6
TRAPPC12-223	ENST00000497597	GRAMD1A	Q96CP6	724 aa		11.29	□□□□□ -0.6
TRAPPC12-223	ENST00000497597	CLMN	Q96JQ2	1002 aa		11.29	□□□□□ -0.6
TRAPPC12-223	ENST00000497597	NUP85	Q9BW27	656 aa		11.29	□□□□□ -0.6
TRAPPC12-223	ENST00000497597	ROPN1B	Q9BZX4	212 aa	Predicted RBP	11.29	□□□□□ -0.6
TRAPPC12-223	ENST00000497597	TSPYL2	Q9H2G4	693 aa	Predicted RBP	11.29	□□□□□ -0.6
TRAPPC12-223	ENST00000497597	ROPN1	Q9HAT0	212 aa	Predicted RBP	11.29	□□□□□ -0.6
TRAPPC12-223	ENST00000497597	DMAP1	Q9NPF5	467 aa	Predicted RBP	11.29	□□□□□ -0.6
TRAPPC12-223	ENST00000497597	PDP2	Q9P2J9	529 aa		11.29	□□□□□ -0.6
TRAPPC12-223	ENST00000497597	ZNF148	Q9UQR1	794 aa		11.29	□□□□□ -0.6
TRAPPC12-223	ENST00000497597	FAM163B	P0C2L3	166 aa		11.28	□□□□□ -0.6
TRAPPC12-223	ENST00000497597	FGFR2	P21802	821 aa		11.28	□□□□□ -0.6
TRAPPC12-223	ENST00000497597	ADRA1D	P25100	572 aa		11.28	□□□□□ -0.6
TRAPPC12-223	ENST00000497597	RFC4	P35249	363 aa		11.28	□□□□□ -0.6
TRAPPC12-223	ENST00000497597	ATXN3	P54252	364 aa	Predicted RBP	11.28	□□□□□ -0.6
TRAPPC12-223	ENST00000497597	PSMC6	P62333	389 aa		11.28	□□□□□ -0.6
TRAPPC12-223	ENST00000497597	GRM4	Q14833	912 aa		11.28	□□□□□ -0.6
TRAPPC12-223	ENST00000497597	ACAP1	Q15027	740 aa		11.28	□□□□□ -0.6
TRAPPC12-223	ENST00000497597	KNOP1	Q1ED39	458 aa	Known RBP	11.28	□□□□□ -0.6
TRAPPC12-223	ENST00000497597	OR52E8	Q6IFG1	317 aa		11.28	□□□□□ -0.6
TRAPPC12-223	ENST00000497597	RFWD2	Q8NHY2	731 aa		11.28	□□□□□ -0.6
TRAPPC12-223	ENST00000497597	NRG4	Q8WWG1	115 aa		11.28	□□□□□ -0.6
TRAPPC12-223	ENST00000497597	PRR11	Q96HE9	360 aa	Predicted RBP	11.28	□□□□□ -0.6
TRAPPC12-223	ENST00000497597	ZSWIM1	Q9BR11	485 aa		11.28	□□□□□ -0.6
TRAPPC12-223	ENST00000497597	BRIP1	Q9BX63	1249 aa		11.28	□□□□□ -0.6
TRAPPC12-223	ENST00000497597	PLVAP	Q9BX97	442 aa		11.28	□□□□□ -0.6
TRAPPC12-223	ENST00000497597	DNM3	Q9UQ16	869 aa		11.28	□□□□□ -0.6
TRAPPC12-223	ENST00000497597	RGPD8	O14715	1765 aa	Predicted RBP	11.28	□□□□□ -0.6
TRAPPC12-223	ENST00000497597	TTC36	A6NLP5	189 aa		11.28	□□□□□ -0.6
TRAPPC12-223	ENST00000497597	CES2	O00748	559 aa		11.28	□□□□□ -0.6
TRAPPC12-223	ENST00000497597	TMEM253	P0C7T8	217 aa		11.28	□□□□□ -0.6
TRAPPC12-223	ENST00000497597	PSMC4	P43686	418 aa		11.28	□□□□□ -0.6
TRAPPC12-223	ENST00000497597	MYL7	Q01449	175 aa		11.28	□□□□□ -0.6
TRAPPC12-223	ENST00000497597	POU5F1	Q01860	360 aa	Known RBP	11.28	□□□□□ -0.6
TRAPPC12-223	ENST00000497597	COG2	Q14746	738 aa		11.28	□□□□□ -0.6
TRAPPC12-223	ENST00000497597	SMAD1	Q15797	465 aa	Known RBP	11.28	□□□□□ -0.6
TRAPPC12-223	ENST00000497597	KCTD21	Q4G0X4	260 aa		11.28	□□□□□ -0.6
TRAPPC12-223	ENST00000497597	LRRC6	Q86X45	466 aa		11.28	□□□□□ -0.6
TRAPPC12-223	ENST00000497597	CCDC127	Q96BQ5	260 aa		11.28	□□□□□ -0.6
TRAPPC12-223	ENST00000497597	SLC7A6OS	Q96CW6	309 aa	Predicted RBP	11.28	□□□□□ -0.6
TRAPPC12-223	ENST00000497597	DNAJC19	Q96DA6	116 aa		11.28	□□□□□ -0.6
TRAPPC12-223	ENST00000497597	ZNF512B	Q96KM6	892 aa	Predicted RBP	11.28	□□□□□ -0.6
TRAPPC12-223	ENST00000497597	TRIM55	Q9BYV6	548 aa		11.28	□□□□□ -0.6
TRAPPC12-223	ENST00000497597	ANGPTL2	Q9UKU9	493 aa		11.28	□□□□□ -0.6
TRAPPC12-223	ENST00000497597	FAF1	Q9UNN5	650 aa	Predicted RBP	11.28	□□□□□ -0.6
TRAPPC12-223	ENST00000497597	FRMD4B	Q9Y2L6	1034 aa		11.28	□□□□□ -0.6
TRAPPC12-223	ENST00000497597	TDRKH	Q9Y2W6	561 aa	Known RBP	11.28	□□□□□ -0.6
TRAPPC12-223	ENST00000497597	SBDS	Q9Y3A5	250 aa	Known RBP eCLIP	11.28	□□□□□ -0.6
TRAPPC12-223	ENST00000497597	RGPD2	P0DJD1	1756 aa		11.28	□□□□□ -0.6
TRAPPC12-223	ENST00000497597	MEGF6	O75095	1541 aa		11.28	□□□□□ -0.6
TRAPPC12-223	ENST00000497597		A0A1W2PPM1	405 aa		11.28	□□□□□ -0.6
TRAPPC12-223	ENST00000497597	MEI4	A8MW99	385 aa		11.28	□□□□□ -0.6
TRAPPC12-223	ENST00000497597	PI4K2B	G5E9Z4	385 aa		11.28	□□□□□ -0.6
TRAPPC12-223	ENST00000497597	DKC1	O60832	514 aa	Known RBP eCLIP	11.28	□□□□□ -0.6	3e-14	■■■■■ 34.3
TRAPPC12-223	ENST00000497597	BANF1	O75531	89 aa		11.28	□□□□□ -0.6
TRAPPC12-223	ENST00000497597	KRT4	P19013	534 aa		11.28	□□□□□ -0.6
TRAPPC12-223	ENST00000497597	CTNNA2	P26232	953 aa		11.28	□□□□□ -0.6
TRAPPC12-223	ENST00000497597	PTGIR	P43119	386 aa		11.28	□□□□□ -0.6
TRAPPC12-223	ENST00000497597	GCLM	P48507	274 aa		11.28	□□□□□ -0.6
TRAPPC12-223	ENST00000497597	MYBPC3	Q14896	1274 aa		11.28	□□□□□ -0.6
TRAPPC12-223	ENST00000497597	SLC1A5	Q15758	541 aa		11.28	□□□□□ -0.6
TRAPPC12-223	ENST00000497597	ZYX	Q15942	572 aa	Known RBP	11.28	□□□□□ -0.6
TRAPPC12-223	ENST00000497597	ZBED8	Q8IZ13	594 aa		11.28	□□□□□ -0.6
TRAPPC12-223	ENST00000497597	ZDHHC14	Q8IZN3	488 aa		11.28	□□□□□ -0.6
TRAPPC12-223	ENST00000497597	DDX55	Q8NHQ9	600 aa	Known RBP eCLIP	11.28	□□□□□ -0.6
TRAPPC12-223	ENST00000497597	GSDMB	Q8TAX9	411 aa		11.28	□□□□□ -0.6
TRAPPC12-223	ENST00000497597	ZNF564	Q8TBZ8	553 aa	Predicted RBP	11.28	□□□□□ -0.6
TRAPPC12-223	ENST00000497597	SH3TC2	Q8TF17	1288 aa		11.28	□□□□□ -0.6
TRAPPC12-223	ENST00000497597	PYDC1	Q8WXC3	89 aa		11.28	□□□□□ -0.6
TRAPPC12-223	ENST00000497597	SYNC	Q9H7C4	482 aa		11.28	□□□□□ -0.6
TRAPPC12-223	ENST00000497597	SH3GLB2	Q9NR46	395 aa		11.28	□□□□□ -0.6
TRAPPC12-223	ENST00000497597	ATXN10	Q9UBB4	475 aa		11.28	□□□□□ -0.6
TRAPPC12-223	ENST00000497597	IKBKG	Q9Y6K9	419 aa		11.28	□□□□□ -0.6
TRAPPC12-223	ENST00000497597	CHD4	Q14839	1912 aa		11.27	□□□□□ -0.6
TRAPPC12-223	ENST00000497597	CHRNB2	P17787	502 aa		11.27	□□□□□ -0.6
TRAPPC12-223	ENST00000497597	INHBC	P55103	352 aa		11.27	□□□□□ -0.6
TRAPPC12-223	ENST00000497597	PARP6	Q2NL67	630 aa		11.27	□□□□□ -0.6

Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms