RNA–Protein interactions for RNA: ENST00000496189.1

SF3A1-209, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 693 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-209ENST00000496189 HSP90AA2PQ14568 343 aaPredicted RBP17.87■□□□□ 0.45
SF3A1-209ENST00000496189 ZC2HC1CQ53FD0 456 aaPredicted RBP17.87■□□□□ 0.45
SF3A1-209ENST00000496189 TMEM173Q86WV6 379 aaPredicted RBP17.87■□□□□ 0.45
SF3A1-209ENST00000496189 CEP120Q8N960 986 aa17.87■□□□□ 0.45
SF3A1-209ENST00000496189 GSTCDQ8NEC7 633 aa17.87■□□□□ 0.45
SF3A1-209ENST00000496189 ZBTB45Q96K62 511 aaPredicted RBP17.87■□□□□ 0.45
SF3A1-209ENST00000496189 EMILIN2Q9BXX0 1053 aa17.87■□□□□ 0.45
SF3A1-209ENST00000496189 TRIM9Q9C026 710 aa17.87■□□□□ 0.45
SF3A1-209ENST00000496189 ZBP1Q9H171 429 aa17.87■□□□□ 0.45
SF3A1-209ENST00000496189 MRPL17Q9NRX2 175 aaKnown RBP17.87■□□□□ 0.45
SF3A1-209ENST00000496189 ADAM28Q9UKQ2 775 aa17.87■□□□□ 0.45
SF3A1-209ENST00000496189 HPSEQ9Y251 543 aa17.87■□□□□ 0.45
SF3A1-209ENST00000496189 SF3B1O75533 1304 aaKnown RBP eCLIP17.87■□□□□ 0.45
SF3A1-209ENST00000496189 CASTOR2A6NHX0 329 aa17.86■□□□□ 0.45
SF3A1-209ENST00000496189 PTGESO14684 152 aa17.86■□□□□ 0.45
SF3A1-209ENST00000496189 OGTO15294 1046 aa17.86■□□□□ 0.45
SF3A1-209ENST00000496189 XPOTO43592 962 aaKnown RBP17.86■□□□□ 0.45
SF3A1-209ENST00000496189 NDUFA8P51970 172 aa17.86■□□□□ 0.45
SF3A1-209ENST00000496189 PPP2R3AQ06190 1150 aa17.86■□□□□ 0.45
SF3A1-209ENST00000496189 ELAVL2Q12926 359 aaKnown RBP17.86■□□□□ 0.45
SF3A1-209ENST00000496189 ADAM15Q13444 863 aa17.86■□□□□ 0.45
SF3A1-209ENST00000496189 DUSP6Q16828 381 aa17.86■□□□□ 0.45
SF3A1-209ENST00000496189 GLRA4Q5JXX5 417 aa17.86■□□□□ 0.45
SF3A1-209ENST00000496189 L1TD1Q5T7N2 865 aaKnown RBP17.86■□□□□ 0.45
SF3A1-209ENST00000496189 ADGRD2Q7Z7M1 963 aa17.86■□□□□ 0.45
SF3A1-209ENST00000496189 MRPL43Q8N983 215 aaKnown RBP17.86■□□□□ 0.45
SF3A1-209ENST00000496189 SNX27Q96L92 541 aa17.86■□□□□ 0.45
SF3A1-209ENST00000496189 C7orf25Q9BPX7 421 aa17.86■□□□□ 0.45
SF3A1-209ENST00000496189 TMEM206Q9H813 350 aa17.86■□□□□ 0.45
SF3A1-209ENST00000496189 RPF1Q9H9Y2 349 aaKnown RBP17.86■□□□□ 0.45
SF3A1-209ENST00000496189 PCDHGC5Q9Y5F6 944 aa17.86■□□□□ 0.45
SF3A1-209ENST00000496189 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP17.85■□□□□ 0.45
SF3A1-209ENST00000496189 SMIM28A0A1B0GU29 152 aa17.85■□□□□ 0.45
SF3A1-209ENST00000496189 FRMD3A2A2Y4 597 aa17.85■□□□□ 0.45
SF3A1-209ENST00000496189 C2orf71A6NGG8 1288 aa17.85■□□□□ 0.45
SF3A1-209ENST00000496189 SPDYE4A6NLX3 237 aa17.85■□□□□ 0.45
SF3A1-209ENST00000496189 PER2O15055 1255 aa17.85■□□□□ 0.45
SF3A1-209ENST00000496189 TRAPPC3O43617 180 aa17.85■□□□□ 0.45
SF3A1-209ENST00000496189 B4GALT3O60512 393 aa17.85■□□□□ 0.45
SF3A1-209ENST00000496189 AFMP43652 599 aa17.85■□□□□ 0.45
SF3A1-209ENST00000496189 GLUD2P49448 558 aa17.85■□□□□ 0.45
SF3A1-209ENST00000496189 CREMQ03060 361 aa17.85■□□□□ 0.45
SF3A1-209ENST00000496189 TCHHQ07283 1943 aa17.85■□□□□ 0.45
SF3A1-209ENST00000496189 COASYQ13057 564 aa17.85■□□□□ 0.45
SF3A1-209ENST00000496189 USP41Q3LFD5 358 aa17.85■□□□□ 0.45
SF3A1-209ENST00000496189 LEXMQ3ZCV2 418 aa17.85■□□□□ 0.45
SF3A1-209ENST00000496189 KANK3Q6NY19 840 aa17.85■□□□□ 0.45
SF3A1-209ENST00000496189 FUT10Q6P4F1 479 aa17.85■□□□□ 0.45
SF3A1-209ENST00000496189 ELMSAN1Q6PJG2 1045 aa17.85■□□□□ 0.45
SF3A1-209ENST00000496189 PPFIBP1Q86W92 1011 aa17.85■□□□□ 0.45
SF3A1-209ENST00000496189 POMGNT1Q8WZA1 660 aa17.85■□□□□ 0.45
SF3A1-209ENST00000496189 CCDC47Q96A33 483 aaKnown RBP17.85■□□□□ 0.45
SF3A1-209ENST00000496189 DDX27Q96GQ7 796 aaKnown RBP17.85■□□□□ 0.45
SF3A1-209ENST00000496189 FIZ1Q96SL8 496 aa17.85■□□□□ 0.45
SF3A1-209ENST00000496189 HERC2P3Q9BVR0 1158 aa17.85■□□□□ 0.45
SF3A1-209ENST00000496189 PLEKHA5Q9HAU0 1116 aa17.85■□□□□ 0.45
SF3A1-209ENST00000496189 CNTN3Q9P232 1028 aa17.85■□□□□ 0.45
SF3A1-209ENST00000496189 SERTAD1Q9UHV2 236 aa17.85■□□□□ 0.45
SF3A1-209ENST00000496189 IRAK3Q9Y616 596 aa17.85■□□□□ 0.45
SF3A1-209ENST00000496189 HIDE1A8MVS5 230 aa17.84■□□□□ 0.45
SF3A1-209ENST00000496189 H3BQ06 376 aaPredicted RBP17.84■□□□□ 0.45
SF3A1-209ENST00000496189 ABLIM1O14639 778 aa17.84■□□□□ 0.45
SF3A1-209ENST00000496189 MYL1P05976 194 aa17.84■□□□□ 0.45
SF3A1-209ENST00000496189 KCNE1P15382 129 aa17.84■□□□□ 0.45
SF3A1-209ENST00000496189 COL19A1Q14993 1142 aa17.84■□□□□ 0.45
SF3A1-209ENST00000496189 CTC1Q2NKJ3 1217 aa17.84■□□□□ 0.45
SF3A1-209ENST00000496189 CNNM4Q6P4Q7 775 aa17.84■□□□□ 0.45
SF3A1-209ENST00000496189 UNC13DQ70J99 1090 aa17.84■□□□□ 0.45
SF3A1-209ENST00000496189 CD302Q8IX05 232 aa17.84■□□□□ 0.45
SF3A1-209ENST00000496189 BCL7CQ8WUZ0 217 aaPredicted RBP17.84■□□□□ 0.45
SF3A1-209ENST00000496189 CASP10Q92851 521 aa17.84■□□□□ 0.45
SF3A1-209ENST00000496189 GBP4Q96PP9 640 aa17.84■□□□□ 0.45
SF3A1-209ENST00000496189 PPP1R10Q96QC0 940 aaKnown RBP17.84■□□□□ 0.45
SF3A1-209ENST00000496189 TSPAN18Q96SJ8 248 aa17.84■□□□□ 0.45
SF3A1-209ENST00000496189 MARCH5Q9NX47 278 aa17.84■□□□□ 0.45
SF3A1-209ENST00000496189 AGO2Q9UKV8 859 aaKnown RBP17.84■□□□□ 0.45
SF3A1-209ENST00000496189 ATG2AQ2TAZ0 1938 aa17.83■□□□□ 0.44
SF3A1-209ENST00000496189 A0A0B4J269 797 aa17.83■□□□□ 0.44
SF3A1-209ENST00000496189 PVALEFA0A1B0GWK0 134 aa17.83■□□□□ 0.44
SF3A1-209ENST00000496189 C2CD2LO14523 706 aa17.83■□□□□ 0.44
SF3A1-209ENST00000496189 ACTN4O43707 911 aaKnown RBP17.83■□□□□ 0.44
SF3A1-209ENST00000496189 ZNF202O95125 648 aa17.83■□□□□ 0.44
SF3A1-209ENST00000496189 LDHAP00338 332 aaKnown RBP17.83■□□□□ 0.44
SF3A1-209ENST00000496189 CXCL8P10145 99 aa17.83■□□□□ 0.44
SF3A1-209ENST00000496189 KLRC2P26717 231 aa17.83■□□□□ 0.44
SF3A1-209ENST00000496189 GTF2F1P35269 517 aaKnown RBP eCLIP17.83■□□□□ 0.44
SF3A1-209ENST00000496189 SEZ6Q53EL9 994 aa17.83■□□□□ 0.44
SF3A1-209ENST00000496189 FAM26FQ5R3K3 315 aa17.83■□□□□ 0.44
SF3A1-209ENST00000496189 PTCRAQ6ISU1 281 aaPredicted RBP17.83■□□□□ 0.44
SF3A1-209ENST00000496189 LLGL2Q6P1M3 1020 aa17.83■□□□□ 0.44
SF3A1-209ENST00000496189 PDXDC1Q6P996 788 aa17.83■□□□□ 0.44
SF3A1-209ENST00000496189 DCLRE1AQ6PJP8 1040 aa17.83■□□□□ 0.44
SF3A1-209ENST00000496189 ALKAL1Q6UXT8 129 aa17.83■□□□□ 0.44
SF3A1-209ENST00000496189 FAM212AQ96EL1 285 aa17.83■□□□□ 0.44
SF3A1-209ENST00000496189 KIF12Q96FN5 646 aa17.83■□□□□ 0.44
SF3A1-209ENST00000496189 PAGE5Q96GU1 130 aa17.83■□□□□ 0.44
SF3A1-209ENST00000496189 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP17.83■□□□□ 0.44
SF3A1-209ENST00000496189 DPP7Q9UHL4 492 aa17.83■□□□□ 0.44
SF3A1-209ENST00000496189 CD207Q9UJ71 328 aa17.83■□□□□ 0.44
SF3A1-209ENST00000496189 EIF3DO15371 548 aaKnown RBP eCLIP17.82■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms