RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 YARSP54577 528 aaKnown RBP11.46□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 RAD23BP54727 409 aa11.46□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 BFSP1Q12934 665 aa11.46□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 CBWD6Q4V339 395 aa11.46□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 CBWD3Q5JTY5 395 aa11.46□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 MIIPQ5JXC2 388 aa11.46□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 CBWD5Q5RIA9 395 aa11.46□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 ZNF720Q7Z2F6 126 aa11.46□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 MTMR8Q96EF0 704 aa11.46□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 SMC6Q96SB8 1091 aa11.46□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 IWS1Q96ST2 819 aa11.46□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 AGTPBP1Q9UPW5 1226 aa11.46□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 OSBPP22059 807 aa11.45□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 FGFR4P22455 802 aa11.45□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 CA8P35219 290 aa11.45□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 GALCP54803 685 aa11.45□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 CDO1Q16878 200 aa11.45□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 PHLDB3Q6NSJ2 640 aa11.45□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 CCDC60Q8IWA6 550 aaPredicted RBP11.45□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 SLC20A1Q8WUM9 679 aa11.45□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 C7orf43Q8WVR3 580 aa11.45□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 OPTNQ96CV9 577 aa11.45□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 MOV10L1Q9BXT6 1211 aaKnown RBP11.45□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 KIAA1683Q9H0B3 1180 aa11.45□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 AGO4Q9HCK5 861 aaKnown RBP11.45□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 RNF14Q9UBS8 474 aa11.45□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 PLAGL2Q9UPG8 496 aa11.45□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 DUOX1Q9NRD9 1551 aa11.45□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 LAMA4Q16363 1823 aa11.45□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 WEE2P0C1S8 567 aa11.45□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 MYBL2P10244 700 aa11.45□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 PLTPP55058 493 aa11.45□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 MRPS9P82933 396 aaKnown RBP11.45□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 MYO9BQ13459 2157 aa11.45□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 ZNF568Q3ZCX4 644 aa11.45□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 FAM160B1Q5W0V3 765 aa11.45□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 NUGGCQ68CJ6 796 aa11.45□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 KDM7AQ6ZMT4 941 aa11.45□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 ZC3H18Q86VM9 953 aaKnown RBP11.45□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 GBP7Q8N8V2 638 aaPredicted RBP11.45□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 ACSF2Q96CM8 615 aaPredicted RBP11.45□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 CDHR1Q96JP9 859 aa11.45□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 SLC38A10Q9HBR0 1119 aa11.45□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 RBAKQ9NYW8 714 aaPredicted RBP11.45□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 FBXO40Q9UH90 709 aa11.45□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 MYH3P11055 1940 aa11.45□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 PLCH1Q4KWH8 1693 aa11.45□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 DYNC1LI2O43237 492 aaPredicted RBP11.45□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 NUMBP49757 651 aa11.45□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 MFAP3P55082 362 aa11.45□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 COG7P83436 770 aa11.45□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 TMED1Q13445 227 aa11.45□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 KCNV1Q6PIU1 500 aa11.45□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 PPP4R3CPQ6ZMV5 832 aa11.45□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 RAB17Q9H0T7 212 aa11.45□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 AGO2Q9UKV8 859 aaKnown RBP11.45□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 IRS2Q9Y4H2 1338 aa11.44□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 PSMD10O75832 226 aa11.44□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 CARSP49589 748 aaKnown RBP11.44□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 UAP1Q16222 522 aaPredicted RBP11.44□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 KLHDC7AQ5VTJ3 777 aa11.44□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 LRRC55Q6ZSA7 311 aa11.44□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 FAM210AQ96ND0 272 aa11.44□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 ECT2Q9H8V3 914 aa11.44□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 PARP2Q9UGN5 583 aa11.44□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 SNX12Q9UMY4 172 aa11.44□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 MYH15Q9Y2K3 1946 aa11.44□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 CCT8L1PA6NM43 557 aa11.44□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 CELF2O95319 508 aaKnown RBP11.44□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 PLS3P13797 630 aa11.44□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 CCND1P24385 295 aa11.44□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 RPS12P25398 132 aaKnown RBP11.44□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 EPHX2P34913 555 aa11.44□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 ORC2Q13416 577 aaPredicted RBP11.44□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 EMC2Q15006 297 aa11.44□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 BSPRYQ5W0U4 402 aa11.44□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 TMEM139Q8IV31 216 aa11.44□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 TAS1R2Q8TE23 839 aa11.44□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 CCDC97Q96F63 343 aaPredicted RBP11.44□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 ERGIC2Q96RQ1 377 aa11.44□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 NAP1L3Q99457 506 aaPredicted RBP11.44□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 RIT2Q99578 217 aa11.44□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 RANBP17Q9H2T7 1088 aaKnown RBP11.44□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 AMACRQ9UHK6 382 aa11.44□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 CCL15-CCL14A0A0B4J2E2 113 aa11.44□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 F5H423 210 aaPredicted RBP11.44□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 PPFIA2O75334 1257 aa11.44□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 KLC1Q07866 573 aa11.44□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 KCNMA1Q12791 1236 aa11.44□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 FSTL1Q12841 308 aa11.44□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 CCL15Q16663 113 aa11.44□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 Q4G0T1 1027 aa11.44□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 FAM182AQ5T1J6 154 aa11.44□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 TRAPPC11Q7Z392 1133 aa11.44□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 ZNF571Q7Z3V5 609 aaPredicted RBP11.44□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 OR2W6PQ8NHA6 318 aa11.44□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 POLR3CQ9BUI4 534 aaPredicted RBP11.44□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 UBXN6Q9BZV1 441 aa11.44□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 TAF1DQ9H5J8 278 aaPredicted RBP11.44□□□□□ -0.58
MSH5-SAPCD1-207ENST00000493662 ZFATQ9P243 1243 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms