RNA–Protein interactions for RNA: ENST00000489741.1

PRPF40A-210, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 3

Gene PRPF40A, Length 776 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-210ENST00000489741 NKX2-4Q9H2Z4 354 aa7.43□□□□□ -1.22
PRPF40A-210ENST00000489741 CNNM2Q9H8M5 875 aa7.43□□□□□ -1.22
PRPF40A-210ENST00000489741 TOMM22Q9NS69 142 aa7.43□□□□□ -1.22
PRPF40A-210ENST00000489741 TMEM59LQ9UK28 342 aa7.43□□□□□ -1.22
PRPF40A-210ENST00000489741 PCDHA11Q9Y5I1 949 aa7.43□□□□□ -1.22
PRPF40A-210ENST00000489741 TNKSO95271 1327 aa7.43□□□□□ -1.22
PRPF40A-210ENST00000489741 MYH4Q9Y623 1939 aa7.42□□□□□ -1.22
PRPF40A-210ENST00000489741 IGHDP01880 384 aa7.42□□□□□ -1.22
PRPF40A-210ENST00000489741 GOLGA8HP0CJ92 632 aa7.42□□□□□ -1.22
PRPF40A-210ENST00000489741 MYOGP15173 224 aa7.42□□□□□ -1.22
PRPF40A-210ENST00000489741 VAMP1P23763 118 aa7.42□□□□□ -1.22
PRPF40A-210ENST00000489741 HK2P52789 917 aa7.42□□□□□ -1.22
PRPF40A-210ENST00000489741 RABGGTBP53611 331 aa7.42□□□□□ -1.22
PRPF40A-210ENST00000489741 GHRHRQ02643 423 aa7.42□□□□□ -1.22
PRPF40A-210ENST00000489741 NUCB1Q02818 461 aa7.42□□□□□ -1.22
PRPF40A-210ENST00000489741 RAD51AP2Q09MP3 1159 aa7.42□□□□□ -1.22
PRPF40A-210ENST00000489741 CCDC178Q5BJE1 867 aa7.42□□□□□ -1.22
PRPF40A-210ENST00000489741 RALGPS1Q5JS13 557 aa7.42□□□□□ -1.22
PRPF40A-210ENST00000489741 FYB2Q5VWT5 728 aa7.42□□□□□ -1.22
PRPF40A-210ENST00000489741 SESTD1Q86VW0 696 aa7.42□□□□□ -1.22
PRPF40A-210ENST00000489741 ADGRF4Q8IZF3 695 aa7.42□□□□□ -1.22
PRPF40A-210ENST00000489741 OR6J1Q8NGC5 347 aa7.42□□□□□ -1.22
PRPF40A-210ENST00000489741 PHOSPHO2Q8TCD6 241 aa7.42□□□□□ -1.22
PRPF40A-210ENST00000489741 SYTL5Q8TDW5 730 aaPredicted RBP7.42□□□□□ -1.22
PRPF40A-210ENST00000489741 ESR2Q92731 530 aa7.42□□□□□ -1.22
PRPF40A-210ENST00000489741 KAT2BQ92831 832 aa7.42□□□□□ -1.22
PRPF40A-210ENST00000489741 ASB2Q96Q27 587 aa7.42□□□□□ -1.22
PRPF40A-210ENST00000489741 LNPKQ9C0E8 428 aa7.42□□□□□ -1.22
PRPF40A-210ENST00000489741 CPVLQ9H3G5 476 aa7.42□□□□□ -1.22
PRPF40A-210ENST00000489741 RNF41Q9H4P4 317 aaPredicted RBP7.42□□□□□ -1.22
PRPF40A-210ENST00000489741 SLC28A3Q9HAS3 691 aa7.42□□□□□ -1.22
PRPF40A-210ENST00000489741 C19orf73Q9NVV2 129 aa7.42□□□□□ -1.22
PRPF40A-210ENST00000489741 SLC4A7Q9Y6M7 1214 aa7.42□□□□□ -1.22
PRPF40A-210ENST00000489741 NEDD4P46934 1319 aa7.42□□□□□ -1.22
PRPF40A-210ENST00000489741 MCM3APO60318 1980 aa7.42□□□□□ -1.22
PRPF40A-210ENST00000489741 MYO9BQ13459 2157 aa7.42□□□□□ -1.22
PRPF40A-210ENST00000489741 SHISA3A0PJX4 238 aa7.41□□□□□ -1.22
PRPF40A-210ENST00000489741 ZNF213O14771 459 aa7.41□□□□□ -1.22
PRPF40A-210ENST00000489741 CLEC3AO75596 197 aa7.41□□□□□ -1.22
PRPF40A-210ENST00000489741 MYL3P08590 195 aa7.41□□□□□ -1.22
PRPF40A-210ENST00000489741 IQCF3P0C7M6 154 aa7.41□□□□□ -1.22
PRPF40A-210ENST00000489741 TXNP10599 105 aaKnown RBP7.41□□□□□ -1.22
PRPF40A-210ENST00000489741 ATP2A2P16615 1042 aaKnown RBP7.41□□□□□ -1.22
PRPF40A-210ENST00000489741 RFC2P35250 354 aa7.41□□□□□ -1.22
PRPF40A-210ENST00000489741 ARHGAP1Q07960 439 aa7.41□□□□□ -1.22
PRPF40A-210ENST00000489741 RBL2Q08999 1139 aa7.41□□□□□ -1.22
PRPF40A-210ENST00000489741 PPP2R5BQ15173 497 aa7.41□□□□□ -1.22
PRPF40A-210ENST00000489741 BRDTQ58F21 947 aaPredicted RBP7.41□□□□□ -1.22
PRPF40A-210ENST00000489741 CHD1LQ86WJ1 897 aa7.41□□□□□ -1.22
PRPF40A-210ENST00000489741 POU5F2Q8N7G0 328 aa7.41□□□□□ -1.22
PRPF40A-210ENST00000489741 ENAHQ8N8S7 591 aaPredicted RBP7.41□□□□□ -1.22
PRPF40A-210ENST00000489741 NSUN6Q8TEA1 469 aaKnown RBP7.41□□□□□ -1.22
PRPF40A-210ENST00000489741 RILPL2Q969X0 211 aa7.41□□□□□ -1.22
PRPF40A-210ENST00000489741 MTMR8Q96EF0 704 aa7.41□□□□□ -1.22
PRPF40A-210ENST00000489741 TAAR1Q96RJ0 339 aa7.41□□□□□ -1.22
PRPF40A-210ENST00000489741 FERD3LQ96RJ6 166 aa7.41□□□□□ -1.22
PRPF40A-210ENST00000489741 IWS1Q96ST2 819 aa7.41□□□□□ -1.22
PRPF40A-210ENST00000489741 DSCC1Q9BVC3 393 aa7.41□□□□□ -1.22
PRPF40A-210ENST00000489741 COL20A1Q9P218 1284 aa7.41□□□□□ -1.22
PRPF40A-210ENST00000489741 MEIS3P2A8K0S8 358 aa7.4□□□□□ -1.22
PRPF40A-210ENST00000489741 B4DLN1 442 aa7.4□□□□□ -1.22
PRPF40A-210ENST00000489741 CCNFP41002 786 aa7.4□□□□□ -1.22
PRPF40A-210ENST00000489741 HSD17B4P51659 736 aa7.4□□□□□ -1.22
PRPF40A-210ENST00000489741 MRPL12P52815 198 aaKnown RBP7.4□□□□□ -1.22
PRPF40A-210ENST00000489741 MRPS5P82675 430 aaKnown RBP7.4□□□□□ -1.22
PRPF40A-210ENST00000489741 SEC23AQ15436 765 aa7.4□□□□□ -1.22
PRPF40A-210ENST00000489741 STXBP2Q15833 593 aa7.4□□□□□ -1.22
PRPF40A-210ENST00000489741 CDC37Q16543 378 aaPredicted RBP7.4□□□□□ -1.22
PRPF40A-210ENST00000489741 LY6KQ17RY6 165 aa7.4□□□□□ -1.22
PRPF40A-210ENST00000489741 QRICH1Q2TAL8 776 aa7.4□□□□□ -1.22
PRPF40A-210ENST00000489741 USH1GQ495M9 461 aa7.4□□□□□ -1.22
PRPF40A-210ENST00000489741 ASPRV1Q53RT3 343 aa7.4□□□□□ -1.22
PRPF40A-210ENST00000489741 TMEM67Q5HYA8 995 aa7.4□□□□□ -1.22
PRPF40A-210ENST00000489741 FBXW10Q5XX13 1052 aa7.4□□□□□ -1.22
PRPF40A-210ENST00000489741 DEFB128Q7Z7B8 93 aa7.4□□□□□ -1.22
PRPF40A-210ENST00000489741 IQCA1Q86XH1 822 aa7.4□□□□□ -1.22
PRPF40A-210ENST00000489741 MCF2L2Q86YR7 1114 aa7.4□□□□□ -1.22
PRPF40A-210ENST00000489741 AFG1LQ8WV93 481 aa7.4□□□□□ -1.22
PRPF40A-210ENST00000489741 DHX38Q92620 1227 aaKnown RBP7.4□□□□□ -1.22
PRPF40A-210ENST00000489741 MRRFQ96E11 262 aaKnown RBP7.4□□□□□ -1.22
PRPF40A-210ENST00000489741 MPHOSPH6Q99547 160 aaKnown RBP7.4□□□□□ -1.22
PRPF40A-210ENST00000489741 KRTAP4-12Q9BQ66 201 aa7.4□□□□□ -1.22
PRPF40A-210ENST00000489741 IL25Q9H293 177 aa7.4□□□□□ -1.22
PRPF40A-210ENST00000489741 ADAMTS10Q9H324 1103 aa7.4□□□□□ -1.22
PRPF40A-210ENST00000489741 RWDD1Q9H446 243 aaPredicted RBP7.4□□□□□ -1.22
PRPF40A-210ENST00000489741 JMJD4Q9H9V9 463 aa7.4□□□□□ -1.22
PRPF40A-210ENST00000489741 DDX41Q9UJV9 622 aaKnown RBP7.4□□□□□ -1.22
PRPF40A-210ENST00000489741 ABCB11O95342 1321 aa7.4□□□□□ -1.22
PRPF40A-210ENST00000489741 SCN10AQ9Y5Y9 1956 aa7.39□□□□□ -1.23
PRPF40A-210ENST00000489741 LCTP09848 1927 aa7.39□□□□□ -1.23
PRPF40A-210ENST00000489741 RAD50Q92878 1312 aa7.39□□□□□ -1.23
PRPF40A-210ENST00000489741 EPOPA6NHQ4 379 aa7.39□□□□□ -1.23
PRPF40A-210ENST00000489741 LRRC10BA6NIK2 292 aa7.39□□□□□ -1.23
PRPF40A-210ENST00000489741 B4E1Z4 1266 aa7.39□□□□□ -1.23
PRPF40A-210ENST00000489741 HAS3O00219 553 aa7.39□□□□□ -1.23
PRPF40A-210ENST00000489741 PPP1R11O60927 126 aaPredicted RBP7.39□□□□□ -1.23
PRPF40A-210ENST00000489741 EIF3JO75822 258 aaKnown RBP7.39□□□□□ -1.23
PRPF40A-210ENST00000489741 GH1P01241 217 aa7.39□□□□□ -1.23
PRPF40A-210ENST00000489741 CXCL10P02778 98 aa7.39□□□□□ -1.23
PRPF40A-210ENST00000489741 GLI1P08151 1106 aa7.39□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms